Wall clock time and date at job start Tue Mar 31 2020 05:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47120 * 2 1 4 4 H 1.09008 * 109.46954 * 306.75994 * 3 2 1 5 5 C 1.52996 * 109.46977 * 186.76018 * 3 2 1 6 6 O 1.42897 * 109.47093 * 63.08595 * 5 3 2 7 7 C 1.50695 * 109.47025 * 66.75875 * 3 2 1 8 8 O 1.21298 * 120.00186 * 359.97438 * 7 3 2 9 9 N 1.34776 * 120.00197 * 180.02562 * 7 3 2 10 10 C 1.39478 * 120.00475 * 180.02562 * 9 7 3 11 11 C 1.36110 * 126.21234 * 359.97438 * 10 9 7 12 12 C 1.39753 * 107.82636 * 180.02562 * 11 10 9 13 13 C 1.50700 * 125.83977 * 180.02562 * 12 11 10 14 14 N 1.30849 * 108.32239 * 0.02562 * 12 11 10 15 15 N 1.35253 * 126.22007 * 179.97438 * 10 9 7 16 16 C 1.46502 * 126.04584 * 0.02562 * 15 10 9 17 17 C 1.50695 * 109.47161 * 270.00170 * 16 15 10 18 18 H 1.07997 * 120.00138 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00114 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00259 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00089 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46961 * 60.00395 * 21 19 17 23 23 H 1.48502 * 109.46918 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47249 * 300.00165 * 21 19 17 25 25 H 1.09001 * 109.47256 * 64.79203 * 1 2 3 26 26 H 1.08998 * 109.47332 * 184.78877 * 1 2 3 27 27 H 1.08998 * 109.47237 * 304.79192 * 1 2 3 28 28 H 1.09000 * 109.46934 * 240.00487 * 2 1 3 29 29 H 1.08998 * 109.47241 * 120.00393 * 2 1 3 30 30 H 1.09005 * 109.46911 * 183.08109 * 5 3 2 31 31 H 1.08994 * 109.47314 * 303.08295 * 5 3 2 32 32 H 0.96704 * 113.99719 * 180.02562 * 6 5 3 33 33 H 0.97004 * 119.99833 * 359.97438 * 9 7 3 34 34 H 1.08003 * 126.08539 * 359.97438 * 11 10 9 35 35 H 1.09003 * 109.47148 * 270.02887 * 13 12 11 36 36 H 1.09006 * 109.46863 * 30.02265 * 13 12 11 37 37 H 1.08997 * 109.47222 * 150.02191 * 13 12 11 38 38 H 1.09007 * 109.47168 * 29.99881 * 16 15 10 39 39 H 1.08996 * 109.47138 * 149.99999 * 16 15 10 40 40 H 0.96990 * 120.00360 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5812 1.9901 -0.8234 5 6 3.5605 1.4458 -0.1698 6 8 3.8992 0.8846 -1.4396 7 6 1.6789 2.1030 1.3055 8 8 1.0727 1.4812 2.1525 9 7 2.0284 3.3848 1.5316 10 6 1.6947 3.9960 2.7401 11 6 1.0211 3.4203 3.7733 12 6 0.8964 4.3741 4.7871 13 6 0.2181 4.1652 6.1165 14 7 1.4692 5.4795 4.3846 15 7 1.9815 5.2683 3.0983 16 6 2.6991 6.2522 2.2838 17 6 4.1765 6.1545 2.5641 18 1 4.5442 5.4321 3.2778 19 6 5.0590 6.9873 1.9093 20 7 4.6113 7.8674 1.0406 21 14 6.8904 6.8667 2.2573 22 1 7.3691 5.5016 1.9215 23 1 7.6178 7.8639 1.4316 24 1 7.1400 7.1390 3.6956 25 1 -0.3634 0.4377 -0.9298 26 1 -0.3634 -1.0240 0.0858 27 1 -0.3633 0.5864 0.8439 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.9300 2.4699 -0.1150 31 1 4.0159 0.8523 0.6229 32 1 4.8497 0.8545 -1.6153 33 1 2.5129 3.8821 0.8542 34 1 0.6486 2.4070 3.8039 35 1 -0.8362 4.4284 6.0318 36 1 0.3091 3.1195 6.4105 37 1 0.6910 4.7965 6.8688 38 1 2.5156 6.0530 1.2279 39 1 2.3479 7.2540 2.5310 40 1 5.2320 8.4535 0.5803 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779748874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:31 Heat of formation + Delta-G solvation = -23.975752 kcal Electronic energy + Delta-G solvation = -22490.555327 eV Core-core repulsion = 19113.734019 eV Total energy + Delta-G solvation = -3376.821309 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.97433 -39.59693 -37.13039 -34.89053 -34.12678 -33.77367 -32.10605 -29.85831 -29.05318 -27.94362 -26.05874 -24.03754 -23.15871 -22.60754 -20.61104 -19.72078 -19.09576 -17.82286 -16.91741 -16.55240 -16.43287 -15.62246 -14.99200 -14.91198 -14.53531 -14.42527 -14.10059 -13.64160 -13.18510 -12.92384 -12.79859 -12.75962 -12.51939 -12.24339 -12.03916 -11.78154 -11.59619 -11.32847 -11.11206 -10.92366 -10.91296 -10.88818 -10.38357 -10.34334 -10.12551 -9.86330 -9.85464 -9.46430 -8.75632 -7.93911 -7.46114 -6.36863 -4.45733 2.19743 2.77575 3.07599 3.13787 3.19567 3.23752 3.57462 3.74613 4.07676 4.20684 4.58258 4.70232 4.92923 4.96247 5.14426 5.33031 5.34895 5.38011 5.54190 5.63155 5.70766 5.85045 6.01618 6.03601 6.15027 6.15776 6.21001 6.26215 6.34834 6.48206 6.65289 6.80883 7.01669 7.41909 7.49418 7.55091 7.60112 7.76328 7.88852 8.27576 8.58951 8.68305 9.21847 10.70233 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011580 B = 0.006516 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.447176 B = 4296.394479 C = 6226.764148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.098 4.098 3 C -0.102 4.102 4 H 0.108 0.892 5 C 0.081 3.919 6 O -0.569 6.569 7 C 0.525 3.475 8 O -0.505 6.505 9 N -0.640 5.640 10 C 0.300 3.700 11 C -0.295 4.295 12 C 0.050 3.950 13 C -0.062 4.062 14 N -0.285 5.285 15 N -0.344 5.344 16 C 0.257 3.743 17 C -0.541 4.541 18 H 0.064 0.936 19 C 0.067 3.933 20 N -0.889 5.889 21 Si 0.906 3.094 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.273 1.273 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.384 0.616 33 H 0.416 0.584 34 H 0.161 0.839 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.876 -12.486 -3.235 13.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.136 4.136 3 C -0.124 4.124 4 H 0.126 0.874 5 C 0.003 3.997 6 O -0.375 6.375 7 C 0.311 3.689 8 O -0.378 6.378 9 N -0.287 5.287 10 C 0.078 3.922 11 C -0.327 4.327 12 C -0.115 4.115 13 C -0.121 4.121 14 N -0.111 5.111 15 N -0.130 5.130 16 C 0.139 3.861 17 C -0.580 4.580 18 H 0.082 0.918 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.198 1.198 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.231 0.769 33 H 0.252 0.748 34 H 0.179 0.821 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.536 -11.548 -2.639 12.685 hybrid contribution 1.885 -0.190 -0.556 1.975 sum -2.650 -11.738 -3.195 12.451 Atomic orbital electron populations 1.21891 0.95376 1.02044 1.02251 1.21298 0.96449 0.93040 1.02818 1.21356 0.96510 0.99235 0.95301 0.87404 1.22079 0.93485 0.98243 0.85890 1.86409 1.29553 1.85326 1.36178 1.20396 0.79234 0.80393 0.88848 1.90615 1.38891 1.63028 1.45311 1.42919 1.56567 1.13145 1.16087 1.17962 0.99675 0.86620 0.87985 1.21267 1.14885 1.02778 0.93759 1.22035 0.99985 0.92057 0.97398 1.20018 0.99040 1.01973 0.91045 1.77354 1.17719 1.22363 0.93626 1.49346 1.42909 1.08273 1.12450 1.19614 0.91212 0.87118 0.88180 1.21298 0.90124 1.21053 1.25521 0.91772 1.24936 0.99752 0.94461 0.94503 1.69903 1.35802 1.20873 1.26113 0.86414 0.83525 0.77976 0.78775 1.20046 1.20858 1.19837 0.93340 0.92811 0.91001 0.90503 0.91202 0.92431 0.92688 0.76863 0.74767 0.82131 0.91379 0.91147 0.91513 0.93870 0.92533 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.71 37.16 0.36 -1.45 16 2 C -0.10 -1.13 5.00 -26.73 -0.13 -1.26 16 3 C -0.10 -1.24 2.43 -91.77 -0.22 -1.47 16 4 H 0.11 1.21 8.14 -51.92 -0.42 0.79 16 5 C 0.08 0.91 6.37 37.16 0.24 1.14 16 6 O -0.57 -5.81 13.00 -35.23 -0.46 -6.26 16 7 C 0.53 8.13 6.80 -10.99 -0.07 8.05 16 8 O -0.50 -8.86 11.22 5.54 0.06 -8.80 16 9 N -0.64 -11.05 5.29 -11.46 -0.06 -11.11 16 10 C 0.30 6.29 7.66 -153.16 -1.17 5.11 16 11 C -0.29 -6.01 9.58 -39.78 -0.38 -6.39 16 12 C 0.05 1.01 7.21 -82.44 -0.59 0.41 16 13 C -0.06 -0.92 10.44 36.01 0.38 -0.55 16 14 N -0.29 -6.64 12.56 33.65 0.42 -6.22 16 15 N -0.34 -8.04 3.60 -61.57 -0.22 -8.26 16 16 C 0.26 6.36 6.01 -5.20 -0.03 6.33 16 17 C -0.54 -14.36 9.39 -34.44 -0.32 -14.68 16 18 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 19 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -24.03 13.29 55.43 0.74 -23.30 16 21 Si 0.91 20.34 29.54 -169.99 -5.02 15.31 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.97 6.04 -51.93 -0.31 0.66 16 28 H 0.08 0.83 7.59 -51.93 -0.39 0.43 16 29 H 0.07 0.85 7.89 -51.93 -0.41 0.44 16 30 H 0.06 0.65 7.48 -51.93 -0.39 0.27 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.38 2.35 9.12 45.56 0.42 2.76 16 33 H 0.42 6.70 7.34 -40.82 -0.30 6.40 16 34 H 0.16 3.17 5.83 -52.48 -0.31 2.86 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.04 1.04 7.50 -51.92 -0.39 0.65 16 39 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -31.23 335.94 -6.55 -37.78 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -5.01 Total: 8.87 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -2.06 Total: -3.07 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.88 Total: -48.89 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.40 Total: -15.06 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.23 -6.55 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779748874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.804 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds