Wall clock time and date at job start Tue Mar 31 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47338 * 2 1 4 4 N 1.40443 * 126.82303 * 269.96051 * 3 2 1 5 5 C 1.30719 * 106.79329 * 180.02562 * 4 3 2 6 6 N 1.33242 * 108.94532 * 359.76134 * 5 4 3 7 7 C 1.30831 * 109.82883 * 0.40330 * 6 5 4 8 8 C 1.50697 * 125.96215 * 179.86852 * 7 6 5 9 9 O 1.45199 * 109.46937 * 269.68924 * 8 7 6 10 10 C 1.34234 * 116.99947 * 179.97438 * 9 8 7 11 11 O 1.20822 * 120.00090 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99997 * 179.72219 * 10 9 8 13 13 C 1.52992 * 109.47263 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47304 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47367 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47327 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99793 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00024 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00107 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00009 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47169 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47241 * 120.00108 * 20 18 16 23 23 H 1.48501 * 109.47173 * 240.00025 * 20 18 16 24 24 H 1.08998 * 109.47354 * 299.99863 * 1 2 3 25 25 H 1.08998 * 109.47067 * 60.00110 * 1 2 3 26 26 H 1.08998 * 109.46999 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47067 * 239.99788 * 2 1 3 28 28 H 1.09002 * 109.47525 * 120.00070 * 2 1 3 29 29 H 1.07996 * 125.52457 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.47315 * 149.69108 * 8 7 6 31 31 H 1.09002 * 109.47266 * 29.68309 * 8 7 6 32 32 H 1.09001 * 109.47201 * 300.00712 * 12 10 9 33 33 H 1.09001 * 109.46880 * 60.00295 * 12 10 9 34 34 H 1.09001 * 109.47602 * 300.00478 * 13 12 10 35 35 H 1.09001 * 109.46922 * 60.00333 * 13 12 10 36 36 H 1.08998 * 109.47353 * 300.00224 * 14 13 12 37 37 H 1.09006 * 109.47395 * 59.99968 * 14 13 12 38 38 H 1.08998 * 109.47065 * 300.00398 * 15 14 13 39 39 H 1.09001 * 109.46892 * 60.00134 * 15 14 13 40 40 H 0.97000 * 120.00440 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 7 2.2997 2.1745 -1.1242 5 6 2.7093 3.3323 -0.6765 6 7 2.6954 3.3104 0.6557 7 6 2.2868 2.1409 1.0761 8 6 2.1369 1.7208 2.5155 9 8 3.3791 1.1286 2.9788 10 6 3.4127 0.6994 4.2502 11 8 2.4363 0.8142 4.9526 12 6 4.6660 0.0680 4.7994 13 6 4.4395 -0.3288 6.2595 14 6 5.7120 -0.9692 6.8174 15 6 5.4853 -1.3666 8.2774 16 6 6.7386 -1.9979 8.8266 17 1 7.6099 -2.1046 8.1974 18 6 6.7730 -2.4393 10.1324 19 7 5.7118 -2.3098 10.8984 20 14 8.3267 -3.2212 10.8134 21 1 9.3703 -3.2498 9.7574 22 1 8.8140 -2.4279 11.9703 23 1 8.0308 -4.6082 11.2539 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.0064 4.1719 -1.2874 30 1 1.3327 0.9897 2.5989 31 1 1.9003 2.5925 3.1257 32 1 4.9121 -0.8188 4.2154 33 1 5.4880 0.7814 4.7406 34 1 4.1936 0.5583 6.8433 35 1 3.6173 -1.0420 6.3188 36 1 5.9583 -1.8562 6.2338 37 1 6.5340 -0.2556 6.7581 38 1 5.2388 -0.4798 8.8612 39 1 4.6636 -2.0803 8.3362 40 1 5.7358 -2.6207 11.8170 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805697898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:14 Heat of formation + Delta-G solvation = -20.157799 kcal Electronic energy + Delta-G solvation = -20879.954912 eV Core-core repulsion = 17503.299162 eV Total energy + Delta-G solvation = -3376.655750 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.56981 -40.60889 -36.98970 -35.55645 -35.04519 -32.78627 -32.42461 -30.74421 -30.03419 -27.98678 -25.78302 -24.53673 -22.87034 -22.24576 -20.86302 -20.72929 -20.08109 -17.86919 -17.66494 -16.85380 -16.33086 -16.19747 -16.03743 -15.47203 -14.91525 -14.61468 -14.45831 -14.18190 -13.52513 -13.48026 -13.08572 -12.78439 -12.66345 -12.47948 -12.29016 -11.81086 -11.74101 -11.69789 -11.08447 -11.04175 -10.69211 -10.64358 -10.51789 -10.48340 -10.42535 -10.19115 -10.03852 -9.68813 -9.32224 -9.03572 -8.34066 -5.98701 -4.01244 0.94762 1.76105 2.11567 2.26247 2.83323 3.31489 3.38981 3.42845 3.58972 3.94667 4.23681 4.37426 4.45713 4.46731 4.61531 4.66195 4.89203 4.92017 5.07502 5.17748 5.19396 5.20918 5.37061 5.49397 5.63202 5.83981 6.00110 6.00922 6.08952 6.17981 6.28806 6.41730 6.72083 6.90006 7.12635 7.61246 7.65437 7.69908 7.83965 8.01933 8.43688 9.06524 9.62844 11.12647 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.038035 B = 0.002311 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.996668 B =12113.107916 C =12265.543996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.118 3.882 3 N -0.362 5.362 4 N -0.311 5.311 5 C 0.199 3.801 6 N -0.522 5.522 7 C 0.276 3.724 8 C 0.146 3.854 9 O -0.356 6.356 10 C 0.465 3.535 11 O -0.499 6.499 12 C -0.110 4.110 13 C -0.109 4.109 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.222 0.778 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.676 6.825 -23.948 26.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.004 4.004 3 N -0.154 5.154 4 N -0.140 5.140 5 C -0.103 4.103 6 N -0.251 5.251 7 C -0.001 4.001 8 C 0.069 3.931 9 O -0.273 6.273 10 C 0.308 3.692 11 O -0.385 6.385 12 C -0.147 4.147 13 C -0.146 4.146 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.238 0.762 30 H 0.113 0.887 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.059 6.834 -24.115 27.008 hybrid contribution 0.621 -0.477 0.491 0.924 sum -9.438 6.357 -23.624 26.222 Atomic orbital electron populations 1.22203 0.93431 1.03883 1.03402 1.21926 0.95779 0.77161 1.05535 1.50518 1.48162 1.13043 1.03703 1.78074 1.22967 1.04869 1.08045 1.26033 0.98002 0.96151 0.90129 1.70477 1.22658 1.20125 1.11832 1.23613 0.97313 0.87762 0.91438 1.21009 0.85951 1.00245 0.85875 1.86588 1.37801 1.71492 1.31378 1.24332 0.91308 0.75046 0.78531 1.90699 1.36853 1.52381 1.58538 1.21655 0.92402 1.01747 0.98943 1.21599 1.00514 1.01773 0.90749 1.21653 0.94454 0.98809 0.99865 1.19103 0.97006 0.96584 0.89055 1.21306 0.98866 1.39050 0.96629 0.92640 1.25041 0.96212 0.96141 0.97196 1.69979 1.28568 1.47414 1.07505 0.86548 0.83516 0.79008 0.78991 1.19757 1.21029 1.21055 0.91811 0.91372 0.89682 0.87799 0.88061 0.76213 0.88742 0.87136 0.87727 0.87577 0.91379 0.91453 0.93191 0.93124 0.96503 0.96539 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.24 37.16 0.38 -0.45 16 2 C 0.12 0.72 6.85 -4.05 -0.03 0.69 16 3 N -0.36 -3.48 3.64 -58.34 -0.21 -3.70 16 4 N -0.31 -3.32 12.70 29.29 0.37 -2.95 16 5 C 0.20 1.97 13.03 -91.81 -1.20 0.77 16 6 N -0.52 -6.18 11.19 -11.97 -0.13 -6.31 16 7 C 0.28 2.95 7.62 -155.69 -1.19 1.76 16 8 C 0.15 1.43 5.58 36.00 0.20 1.63 16 9 O -0.36 -4.11 10.20 -39.27 -0.40 -4.51 16 10 C 0.46 5.98 7.96 36.01 0.29 6.27 16 11 O -0.50 -7.72 15.73 -18.75 -0.29 -8.02 16 12 C -0.11 -1.35 5.81 -27.89 -0.16 -1.51 16 13 C -0.11 -1.77 4.50 -26.74 -0.12 -1.89 16 14 C -0.11 -2.15 5.15 -26.73 -0.14 -2.28 16 15 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 16 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 17 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 18 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 20 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.10 0.52 7.72 -51.93 -0.40 0.12 16 29 H 0.22 1.28 8.06 -52.49 -0.42 0.85 16 30 H 0.09 0.73 7.75 -51.93 -0.40 0.33 16 31 H 0.11 1.08 8.13 -51.93 -0.42 0.65 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 35 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 349.22 15.07 5.26 5.26 Total: -1.00 -34.64 349.22 -8.46 -43.10 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -6.26 Total: -4.99 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -2.51 Total: -8.15 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.76 Total: -39.29 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.70 Total: -12.53 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.64 -8.46 -43.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.945 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds