Wall clock time and date at job start Tue Mar 31 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47028 * 2 1 4 4 O 1.45206 * 109.47160 * 240.00522 * 2 1 3 5 5 C 1.34223 * 117.00219 * 89.99675 * 4 2 1 6 6 O 1.20829 * 120.00331 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99981 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47161 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47254 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47459 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47278 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00273 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00015 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00226 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99756 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47369 * 89.99970 * 15 13 11 17 17 H 1.48504 * 109.46854 * 209.99938 * 15 13 11 18 18 H 1.48502 * 109.47184 * 329.99762 * 15 13 11 19 19 C 1.50697 * 109.47476 * 120.00094 * 2 1 3 20 20 N 1.30519 * 126.34476 * 74.99974 * 19 2 1 21 21 N 1.28600 * 109.66808 * 179.73098 * 20 19 2 22 22 C 1.30516 * 109.67696 * 0.44987 * 21 20 19 23 23 N 1.35495 * 107.30468 * 359.55808 * 22 21 20 24 24 C 1.46499 * 126.97946 * 180.26092 * 23 22 21 25 25 H 1.09007 * 109.47028 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46994 * 299.99551 * 1 2 3 27 27 H 1.08997 * 109.47278 * 60.00186 * 1 2 3 28 28 H 1.09001 * 109.47029 * 299.99357 * 7 5 4 29 29 H 1.08994 * 109.47514 * 59.99496 * 7 5 4 30 30 H 1.09001 * 109.46523 * 299.99543 * 8 7 5 31 31 H 1.08994 * 109.47419 * 59.99313 * 8 7 5 32 32 H 1.08998 * 109.47133 * 300.00181 * 9 8 7 33 33 H 1.09011 * 109.47070 * 59.99605 * 9 8 7 34 34 H 1.09005 * 109.47269 * 300.00591 * 10 9 8 35 35 H 1.09005 * 109.46501 * 60.00316 * 10 9 8 36 36 H 0.97001 * 120.00319 * 180.02562 * 14 13 11 37 37 H 1.08002 * 126.35125 * 179.82818 * 22 21 20 38 38 H 1.09004 * 109.47293 * 90.03308 * 24 23 22 39 39 H 1.09007 * 109.47309 * 210.02845 * 24 23 22 40 40 H 1.09000 * 109.47123 * 330.02746 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1857 5 6 2.2171 0.0641 -2.2811 6 8 1.9973 1.2518 -2.2507 7 6 2.7182 -0.5771 -3.5495 8 6 2.8635 0.4893 -4.6371 9 6 3.3728 -0.1615 -5.9247 10 6 3.5175 0.9046 -7.0125 11 6 4.0198 0.2636 -8.2805 12 1 4.2158 -0.7980 -8.3080 13 6 4.2291 1.0326 -9.4056 14 7 4.6670 0.4732 -10.5123 15 14 3.8907 2.8692 -9.3579 16 1 5.1210 3.5885 -8.9406 17 1 3.4805 3.3321 -10.7079 18 1 2.8017 3.1468 -8.3872 19 6 2.0324 -0.7104 1.2304 20 7 2.0337 -1.9998 1.4328 21 7 2.5397 -2.2563 2.5869 22 6 2.8753 -1.1416 3.1772 23 7 2.5664 -0.1289 2.3316 24 6 2.7687 1.3037 2.5614 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 3.6871 -1.0406 -3.3641 29 1 2.0088 -1.3368 -3.8775 30 1 1.8947 0.9532 -4.8227 31 1 3.5730 1.2487 -4.3089 32 1 4.3415 -0.6253 -5.7388 33 1 2.6634 -0.9213 -6.2531 34 1 2.5485 1.3680 -7.1982 35 1 4.2267 1.6645 -6.6842 36 1 4.8146 1.0143 -11.3038 37 1 3.3209 -1.0446 4.1561 38 1 3.7546 1.5943 2.1983 39 1 2.0041 1.8688 2.0281 40 1 2.6979 1.5141 3.6285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805698178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:26 Heat of formation + Delta-G solvation = -22.654578 kcal Electronic energy + Delta-G solvation = -21205.187169 eV Core-core repulsion = 17828.423151 eV Total energy + Delta-G solvation = -3376.764018 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.57666 -40.72652 -37.18700 -35.58574 -35.14753 -33.28148 -32.58918 -30.36261 -29.84542 -28.20089 -26.42508 -24.74485 -23.03698 -22.51928 -21.07242 -20.36822 -20.10515 -17.90729 -17.80080 -16.91355 -16.65564 -16.58216 -16.28597 -15.46897 -14.92485 -14.75684 -14.21944 -14.04335 -13.74341 -13.58388 -13.36904 -12.71549 -12.62460 -12.49476 -12.23553 -12.02784 -11.81851 -11.69295 -11.18585 -11.14846 -10.82494 -10.74518 -10.68274 -10.61200 -10.60504 -9.89836 -9.73243 -9.69270 -9.54366 -9.15094 -8.51312 -6.01940 -3.99745 1.20412 1.78602 2.10121 2.38576 2.68968 3.32924 3.40208 3.45017 3.62837 3.98324 4.12003 4.30491 4.39983 4.45655 4.47845 4.65088 4.73018 4.92932 5.05332 5.17216 5.17983 5.28619 5.32506 5.36495 5.59269 5.62650 5.74956 5.92638 6.02442 6.18248 6.29651 6.32397 6.59144 6.72622 6.93607 7.33587 7.46319 7.61651 7.82450 8.31944 8.56554 9.03302 9.60930 11.11552 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036443 B = 0.002582 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.131719 B =10842.609081 C =11077.121404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.179 3.821 3 H 0.100 0.900 4 O -0.338 6.338 5 C 0.464 3.536 6 O -0.507 6.507 7 C -0.111 4.111 8 C -0.110 4.110 9 C -0.103 4.103 10 C -0.015 4.015 11 C -0.520 4.520 12 H 0.072 0.928 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.880 3.120 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.265 1.265 19 C 0.168 3.832 20 N -0.259 5.259 21 N -0.296 5.296 22 C 0.155 3.845 23 N -0.472 5.472 24 C 0.066 3.934 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.016 0.984 35 H 0.011 0.989 36 H 0.262 0.738 37 H 0.223 0.777 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.206 2.575 30.179 30.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.121 3.879 3 H 0.118 0.882 4 O -0.254 6.254 5 C 0.307 3.693 6 O -0.394 6.394 7 C -0.149 4.149 8 C -0.148 4.148 9 C -0.141 4.141 10 C -0.052 4.052 11 C -0.558 4.558 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.544 5.544 15 Si 0.707 3.293 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.189 1.189 19 C -0.100 4.100 20 N -0.101 5.101 21 N -0.136 5.136 22 C -0.132 4.132 23 N -0.164 5.164 24 C -0.077 4.077 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.239 0.761 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.429 1.519 29.796 30.520 hybrid contribution 0.209 2.538 0.379 2.575 sum -6.220 4.057 30.175 31.076 Atomic orbital electron populations 1.22170 0.91623 1.04623 1.03615 1.20428 0.95018 0.94400 0.78091 0.88190 1.86719 1.77106 1.42016 1.19527 1.24364 0.73672 0.86087 0.85144 1.90652 1.48037 1.16743 1.83978 1.21622 1.03765 1.00966 0.88528 1.21615 1.02627 0.96602 0.93965 1.21482 1.00242 0.99309 0.93021 1.19573 0.96510 0.94756 0.94365 1.21174 1.43812 0.96763 0.94076 0.91017 1.25047 0.94630 0.98541 0.95400 1.69918 1.46496 1.36061 1.01931 0.86772 0.79219 0.86002 0.77269 1.20353 1.21444 1.18938 1.24269 1.02877 0.91342 0.91471 1.74346 1.15947 1.10381 1.09382 1.74347 1.14234 1.22946 1.02033 1.26556 1.03820 0.83310 0.99495 1.46179 1.45934 1.09752 1.14551 1.22241 1.04412 0.76322 1.04720 0.90102 0.90749 0.90253 0.87549 0.87314 0.91446 0.91593 0.92552 0.92452 0.96574 0.97069 0.92785 0.76089 0.89407 0.88848 0.88335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.53 37.16 0.35 -1.03 16 2 C 0.18 1.82 2.88 -27.89 -0.08 1.74 16 3 H 0.10 0.91 6.25 -51.93 -0.32 0.58 16 4 O -0.34 -4.25 9.86 -39.24 -0.39 -4.64 16 5 C 0.46 6.10 7.93 36.00 0.29 6.39 16 6 O -0.51 -7.60 15.20 -18.75 -0.29 -7.89 16 7 C -0.11 -1.40 5.81 -27.88 -0.16 -1.56 16 8 C -0.11 -1.73 4.50 -26.73 -0.12 -1.85 16 9 C -0.10 -1.96 5.15 -26.73 -0.14 -2.10 16 10 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 11 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 12 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 13 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 14 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 15 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 19 C 0.17 1.80 6.92 -154.99 -1.07 0.73 16 20 N -0.26 -3.57 12.21 32.79 0.40 -3.17 16 21 N -0.30 -3.68 12.21 29.69 0.36 -3.32 16 22 C 0.16 1.20 12.74 -89.95 -1.15 0.05 16 23 N -0.47 -3.48 3.15 -122.69 -0.39 -3.86 16 24 C 0.07 0.18 10.84 59.85 0.65 0.83 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 31 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 34 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 35 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.22 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.09 0.19 7.46 -51.93 -0.39 -0.19 16 40 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 LS Contribution 342.62 15.07 5.16 5.16 Total: -1.00 -36.89 342.62 -7.14 -44.03 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -6.13 Total: -5.49 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -1.97 Total: -10.74 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 1.15 Total: -37.77 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.67 Total: -12.52 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.89 -7.14 -44.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805698178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.372 kcal (2) G-P(sol) polarization free energy of solvation -36.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds