Wall clock time and date at job start Tue Mar 31 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47028 * 2 1 4 4 O 1.45206 * 109.47160 * 240.00522 * 2 1 3 5 5 C 1.34223 * 117.00219 * 89.99675 * 4 2 1 6 6 O 1.20829 * 120.00331 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99981 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47161 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47254 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47459 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47278 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00273 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00015 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00226 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99756 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47369 * 89.99970 * 15 13 11 17 17 H 1.48504 * 109.46854 * 209.99938 * 15 13 11 18 18 H 1.48502 * 109.47184 * 329.99762 * 15 13 11 19 19 C 1.50697 * 109.47476 * 120.00094 * 2 1 3 20 20 N 1.30519 * 126.34476 * 74.99974 * 19 2 1 21 21 N 1.28600 * 109.66808 * 179.73098 * 20 19 2 22 22 C 1.30516 * 109.67696 * 0.44987 * 21 20 19 23 23 N 1.35495 * 107.30468 * 359.55808 * 22 21 20 24 24 C 1.46499 * 126.97946 * 180.26092 * 23 22 21 25 25 H 1.09007 * 109.47028 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46994 * 299.99551 * 1 2 3 27 27 H 1.08997 * 109.47278 * 60.00186 * 1 2 3 28 28 H 1.09001 * 109.47029 * 299.99357 * 7 5 4 29 29 H 1.08994 * 109.47514 * 59.99496 * 7 5 4 30 30 H 1.09001 * 109.46523 * 299.99543 * 8 7 5 31 31 H 1.08994 * 109.47419 * 59.99313 * 8 7 5 32 32 H 1.08998 * 109.47133 * 300.00181 * 9 8 7 33 33 H 1.09011 * 109.47070 * 59.99605 * 9 8 7 34 34 H 1.09005 * 109.47269 * 300.00591 * 10 9 8 35 35 H 1.09005 * 109.46501 * 60.00316 * 10 9 8 36 36 H 0.97001 * 120.00319 * 180.02562 * 14 13 11 37 37 H 1.08002 * 126.35125 * 179.82818 * 22 21 20 38 38 H 1.09004 * 109.47293 * 90.03308 * 24 23 22 39 39 H 1.09007 * 109.47309 * 210.02845 * 24 23 22 40 40 H 1.09000 * 109.47123 * 330.02746 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1857 5 6 2.2171 0.0641 -2.2811 6 8 1.9973 1.2518 -2.2507 7 6 2.7182 -0.5771 -3.5495 8 6 2.8635 0.4893 -4.6371 9 6 3.3728 -0.1615 -5.9247 10 6 3.5175 0.9046 -7.0125 11 6 4.0198 0.2636 -8.2805 12 1 4.2158 -0.7980 -8.3080 13 6 4.2291 1.0326 -9.4056 14 7 4.6670 0.4732 -10.5123 15 14 3.8907 2.8692 -9.3579 16 1 5.1210 3.5885 -8.9406 17 1 3.4805 3.3321 -10.7079 18 1 2.8017 3.1468 -8.3872 19 6 2.0324 -0.7104 1.2304 20 7 2.0337 -1.9998 1.4328 21 7 2.5397 -2.2563 2.5869 22 6 2.8753 -1.1416 3.1772 23 7 2.5664 -0.1289 2.3316 24 6 2.7687 1.3037 2.5614 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 3.6871 -1.0406 -3.3641 29 1 2.0088 -1.3368 -3.8775 30 1 1.8947 0.9532 -4.8227 31 1 3.5730 1.2487 -4.3089 32 1 4.3415 -0.6253 -5.7388 33 1 2.6634 -0.9213 -6.2531 34 1 2.5485 1.3680 -7.1982 35 1 4.2267 1.6645 -6.6842 36 1 4.8146 1.0143 -11.3038 37 1 3.3209 -1.0446 4.1561 38 1 3.7546 1.5943 2.1983 39 1 2.0041 1.8688 2.0281 40 1 2.6979 1.5141 3.6285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805698178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:26 Heat of formation + Delta-G solvation = -44.735917 kcal Electronic energy + Delta-G solvation = -21206.144688 eV Core-core repulsion = 17828.423151 eV Total energy + Delta-G solvation = -3377.721537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.24959 -41.71321 -38.18199 -36.66750 -36.15204 -34.66949 -33.98292 -31.97203 -30.61085 -28.55335 -28.01324 -25.65427 -24.21643 -23.41965 -22.12407 -21.65494 -21.29519 -18.93434 -18.67428 -18.51606 -17.66881 -17.43201 -17.13148 -16.32918 -16.15169 -15.97346 -15.61964 -14.80796 -14.72199 -14.42369 -14.32307 -13.87510 -13.79955 -13.72057 -13.52359 -13.25371 -12.88459 -12.75246 -12.45629 -12.35254 -12.12782 -12.04769 -11.75029 -11.74098 -11.43827 -11.38328 -11.32971 -11.24067 -11.21253 -10.74686 -10.46053 -8.28016 -6.31648 0.54772 1.09004 1.19522 1.36579 1.38448 1.50955 1.68662 1.92293 2.37550 2.93801 3.07457 3.50328 3.55665 3.78507 3.80656 3.83941 3.94416 4.09271 4.28188 4.33292 4.41127 4.56571 4.59615 4.61470 4.63451 4.74160 4.77660 4.82998 4.96121 5.05165 5.10661 5.17204 5.19930 5.33122 5.60411 5.65922 5.69724 5.80979 6.31030 6.62991 6.77060 7.33134 7.61013 8.88771 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036443 B = 0.002582 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.131719 B =10842.609081 C =11077.121404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.175 3.825 3 H 0.113 0.887 4 O -0.348 6.348 5 C 0.471 3.529 6 O -0.528 6.528 7 C -0.108 4.108 8 C -0.099 4.099 9 C -0.096 4.096 10 C -0.016 4.016 11 C -0.532 4.532 12 H 0.034 0.966 13 C 0.001 3.999 14 N -0.953 5.953 15 Si 0.951 3.049 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.247 1.247 19 C 0.158 3.842 20 N -0.308 5.308 21 N -0.350 5.350 22 C 0.175 3.825 23 N -0.466 5.466 24 C 0.056 3.944 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.018 0.982 35 H 0.016 0.984 36 H 0.266 0.734 37 H 0.270 0.730 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.557 4.761 32.718 33.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.118 3.882 3 H 0.130 0.870 4 O -0.264 6.264 5 C 0.316 3.684 6 O -0.416 6.416 7 C -0.145 4.145 8 C -0.136 4.136 9 C -0.134 4.134 10 C -0.053 4.053 11 C -0.570 4.570 12 H 0.052 0.948 13 C -0.196 4.196 14 N -0.594 5.594 15 Si 0.774 3.226 16 H -0.192 1.192 17 H -0.210 1.210 18 H -0.171 1.171 19 C -0.111 4.111 20 N -0.149 5.149 21 N -0.189 5.189 22 C -0.112 4.112 23 N -0.157 5.157 24 C -0.085 4.085 25 H 0.087 0.913 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.286 0.714 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.784 3.705 32.366 33.276 hybrid contribution 0.362 1.801 -0.340 1.869 sum -6.422 5.506 32.026 33.124 Atomic orbital electron populations 1.22144 0.90583 1.04118 1.04627 1.20679 0.95874 0.94592 0.77054 0.86964 1.86691 1.77050 1.42491 1.20149 1.24265 0.73132 0.85652 0.85367 1.90641 1.49113 1.17511 1.84384 1.21526 1.05193 1.00204 0.87597 1.21383 1.02070 0.97061 0.93129 1.21342 1.00650 0.98093 0.93319 1.19565 0.96177 0.95947 0.93615 1.21566 1.43558 0.95447 0.96434 0.94769 1.26053 0.94445 1.04189 0.94890 1.70073 1.48131 1.38269 1.02910 0.85644 0.79895 0.79222 0.77809 1.19193 1.21006 1.17069 1.24290 1.03326 0.91014 0.92441 1.74222 1.17726 1.12344 1.10654 1.74226 1.16567 1.25582 1.02505 1.27424 1.01293 0.82194 1.00316 1.46429 1.44613 1.11448 1.13252 1.22650 1.05046 0.73554 1.07216 0.91336 0.88432 0.90467 0.86061 0.85662 0.91746 0.91853 0.92494 0.92389 0.96358 0.96531 0.92558 0.71448 0.88691 0.88148 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.53 71.98 0.69 -1.80 16 2 C 0.18 3.36 2.88 29.85 0.09 3.44 16 3 H 0.11 1.84 6.25 -2.38 -0.01 1.82 16 4 O -0.35 -8.43 9.86 -51.35 -0.51 -8.94 16 5 C 0.47 11.70 7.93 71.24 0.56 12.26 16 6 O -0.53 -14.95 15.20 21.96 0.33 -14.62 16 7 C -0.11 -2.52 5.81 29.85 0.17 -2.34 16 8 C -0.10 -2.93 4.50 30.59 0.14 -2.79 16 9 C -0.10 -3.57 5.15 30.59 0.16 -3.42 16 10 C -0.02 -0.73 4.04 29.85 0.12 -0.61 16 11 C -0.53 -31.04 9.66 25.60 0.25 -30.79 16 12 H 0.03 2.18 7.99 -2.91 -0.02 2.15 16 13 C 0.00 0.04 5.47 84.66 0.46 0.50 16 14 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 15 Si 0.95 44.97 27.47 68.60 1.88 46.85 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 18 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 19 C 0.16 3.24 6.92 137.98 0.96 4.20 16 20 N -0.31 -8.51 12.21 -50.16 -0.61 -9.12 16 21 N -0.35 -8.55 12.21 -59.99 -0.73 -9.28 16 22 C 0.18 2.31 12.74 180.11 2.30 4.61 16 23 N -0.47 -5.78 3.15 -542.06 -1.71 -7.49 16 24 C 0.06 0.11 10.84 127.77 1.38 1.50 16 25 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 28 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.06 1.96 8.10 -2.39 -0.02 1.94 16 31 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.02 0.84 7.20 -2.38 -0.02 0.83 16 35 H 0.02 0.75 7.57 -2.38 -0.02 0.73 16 36 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 37 H 0.27 0.38 8.06 -2.91 -0.02 0.36 16 38 H 0.09 0.11 8.14 -2.38 -0.02 0.09 16 39 H 0.10 0.10 7.46 -2.38 -0.02 0.08 16 40 H 0.13 -0.60 8.14 -2.39 -0.02 -0.62 16 Total: -1.00 -82.55 342.62 7.20 -75.35 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: 0.97 Total: 2.82 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 7.27 Total: -15.26 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -2.75 Total: -86.21 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.17 Total: -23.56 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.85 kcal Total: -82.55 7.20 -75.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805698178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.617 kcal (2) G-P(sol) polarization free energy of solvation -82.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds