Wall clock time and date at job start Tue Mar 31 2020 05:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47181 * 2 1 4 4 C 1.52996 * 109.47326 * 239.99274 * 2 1 3 5 5 C 1.50703 * 109.47006 * 60.00492 * 4 2 1 6 6 H 1.08002 * 119.99971 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00059 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99971 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99948 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.46976 * 90.00399 * 9 7 5 11 11 H 1.48495 * 109.47073 * 209.99923 * 9 7 5 12 12 H 1.48495 * 109.47491 * 330.00510 * 9 7 5 13 13 C 1.53005 * 109.46451 * 119.99598 * 2 1 3 14 14 N 1.46496 * 109.47401 * 299.99639 * 13 2 1 15 15 C 1.34773 * 119.99973 * 179.97438 * 14 13 2 16 16 O 1.21588 * 120.00151 * 359.73121 * 15 14 13 17 17 N 1.34784 * 119.99935 * 180.02562 * 15 14 13 18 18 C 1.46499 * 119.99893 * 179.72905 * 17 15 14 19 19 C 1.50699 * 109.46700 * 180.02562 * 18 17 15 20 20 C 1.41379 * 126.80539 * 94.70985 * 19 18 17 21 21 C 1.35451 * 103.98599 * 179.88709 * 20 19 18 22 22 O 1.34039 * 106.44722 * 0.36383 * 21 20 19 23 23 N 1.20923 * 111.56826 * 359.75380 * 22 21 20 24 24 H 1.09002 * 109.47522 * 300.00912 * 1 2 3 25 25 H 1.09001 * 109.46796 * 60.00202 * 1 2 3 26 26 H 1.08993 * 109.47323 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46813 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.46840 * 299.99162 * 3 2 1 29 29 H 1.08992 * 109.47827 * 59.99924 * 3 2 1 30 30 H 1.09007 * 109.47383 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47155 * 300.00762 * 4 2 1 32 32 H 0.96993 * 119.99685 * 179.97438 * 8 7 5 33 33 H 1.09007 * 109.46761 * 179.97438 * 13 2 1 34 34 H 1.08997 * 109.46989 * 60.00554 * 13 2 1 35 35 H 0.97004 * 120.00009 * 0.02562 * 14 13 2 36 36 H 0.97005 * 119.99846 * 359.72693 * 17 15 14 37 37 H 1.08998 * 109.47134 * 299.99552 * 18 17 15 38 38 H 1.08994 * 109.47397 * 59.99843 * 18 17 15 39 39 H 1.07999 * 128.00768 * 0.02562 * 20 19 18 40 40 H 1.08005 * 126.77550 * 180.10344 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5378 -0.0110 -2.4797 6 1 0.9173 0.8674 -2.3807 7 6 1.8705 -0.4825 -3.7319 8 7 1.4318 0.1371 -4.8058 9 14 2.9444 -2.0013 -3.9031 10 1 2.0857 -3.2122 -3.9479 11 1 3.7359 -1.9092 -5.1561 12 1 3.8650 -2.0902 -2.7414 13 6 2.0399 -0.7212 1.2494 14 7 1.5516 -0.0305 2.4455 15 6 1.8766 -0.4912 3.6696 16 8 2.5711 -1.4830 3.7812 17 7 1.4269 0.1440 4.7700 18 6 1.7754 -0.3603 6.1006 19 6 1.1518 0.5220 7.1512 20 6 -0.0850 0.3166 7.8046 21 6 -0.1891 1.3716 8.6476 22 8 0.9124 2.1133 8.4651 23 7 1.6428 1.6272 7.6330 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9562 -0.8901 29 1 1.6768 1.9564 0.8899 30 1 3.1301 -0.7218 -1.2489 31 1 1.6766 -1.7490 -1.2491 32 1 1.6662 -0.1944 -5.6867 33 1 3.1299 -0.7216 1.2492 34 1 1.6766 -1.7489 1.2493 35 1 0.9937 0.7580 2.3564 36 1 0.8726 0.9350 4.6809 37 1 1.4016 -1.3780 6.2128 38 1 2.8589 -0.3562 6.2185 39 1 -0.7839 -0.4949 7.6654 40 1 -1.0014 1.5771 9.3291 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806904160.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:07 Heat of formation + Delta-G solvation = 21.753110 kcal Electronic energy + Delta-G solvation = -21512.376954 eV Core-core repulsion = 18137.538597 eV Total energy + Delta-G solvation = -3374.838356 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.41546 -39.98294 -37.47120 -35.84726 -33.75675 -33.37792 -32.15306 -31.95852 -28.16348 -27.50936 -26.55112 -25.67403 -23.59429 -22.51358 -21.55900 -20.78640 -18.98615 -18.33555 -17.97114 -17.54931 -16.86352 -16.19470 -15.73713 -15.28368 -14.52781 -14.37248 -14.19552 -13.86917 -13.78005 -13.41415 -13.19208 -12.89585 -12.70548 -12.30209 -12.24634 -11.76683 -11.23833 -11.11690 -11.00674 -10.85305 -10.60932 -10.47477 -10.19439 -10.08043 -9.96217 -9.74015 -9.51243 -9.33316 -8.98819 -8.66628 -8.52776 -6.03695 -4.00904 1.03311 1.61156 2.78898 2.90391 3.28598 3.32494 3.40552 3.45025 3.65896 4.09125 4.35255 4.46546 4.68219 4.89000 4.94212 5.29101 5.30266 5.38973 5.39663 5.54692 5.55302 5.64668 6.12489 6.13019 6.16588 6.24758 6.33699 6.50699 6.60316 6.72128 6.87188 6.96951 7.02150 7.06064 7.21369 7.37789 7.78699 7.79020 8.06139 8.53232 8.66326 9.00344 9.59094 11.09058 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.041321 B = 0.002822 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.459144 B = 9917.980304 C =10230.777898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.510 4.510 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.144 3.856 14 N -0.734 5.734 15 C 0.704 3.296 16 O -0.593 6.593 17 N -0.748 5.748 18 C 0.222 3.778 19 C -0.004 4.004 20 C -0.220 4.220 21 C -0.060 4.060 22 O 0.107 5.893 23 N -0.347 5.347 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.019 0.981 31 H 0.014 0.986 32 H 0.262 0.738 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.396 0.604 36 H 0.396 0.604 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.175 0.825 40 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 2.431 26.016 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.063 4.063 3 C -0.185 4.185 4 C -0.040 4.040 5 C -0.548 4.548 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.544 5.544 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.189 1.189 13 C 0.021 3.979 14 N -0.390 5.390 15 C 0.403 3.597 16 O -0.471 6.471 17 N -0.406 5.406 18 C 0.097 3.903 19 C -0.163 4.163 20 C -0.242 4.242 21 C -0.141 4.141 22 O 0.037 5.963 23 N -0.048 5.048 24 H 0.049 0.951 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.230 0.770 36 H 0.230 0.770 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.193 0.807 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -3.568 2.167 25.658 25.995 hybrid contribution -0.757 -0.687 -0.248 1.052 sum -4.326 1.480 25.410 25.818 Atomic orbital electron populations 1.21767 0.94827 1.01234 1.00677 1.20700 0.95810 0.95932 0.93890 1.21766 1.00488 0.95594 1.00681 1.19595 0.96342 0.95514 0.92556 1.21078 1.31823 1.13307 0.88614 0.90410 1.25002 0.95713 0.96777 0.95982 1.69903 1.45965 1.40609 0.97880 0.86853 0.81344 0.83887 0.77669 1.20376 1.21527 1.18936 1.21522 0.98712 0.95655 0.82030 1.45309 1.56064 1.33217 1.04363 1.15906 0.80384 0.82925 0.80443 1.90925 1.42967 1.27263 1.85958 1.45007 1.57938 1.33327 1.04284 1.19213 0.99806 0.94395 0.76908 1.23685 0.95129 0.95537 1.01942 1.22823 0.98869 1.02545 0.99943 1.26096 0.92942 0.92650 1.02424 1.84880 1.24752 1.43179 1.43499 1.73948 1.16115 1.11073 1.03674 0.95110 0.90919 0.93390 0.93378 0.90909 0.95096 0.96304 0.96754 0.92804 0.91948 0.91928 0.76953 0.77039 0.89189 0.89831 0.80742 0.76450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.06 -1.15 0.54 -154.51 -0.08 -1.23 16 3 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 5 C -0.51 -13.64 8.20 -34.44 -0.28 -13.93 16 6 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 9 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 13 C 0.14 2.45 4.56 -4.04 -0.02 2.43 16 14 N -0.73 -10.41 4.96 -65.22 -0.32 -10.73 16 15 C 0.70 10.50 8.57 -86.91 -0.74 9.75 16 16 O -0.59 -11.21 16.34 5.29 0.09 -11.12 16 17 N -0.75 -8.31 5.55 -66.42 -0.37 -8.68 16 18 C 0.22 2.25 6.26 -5.19 -0.03 2.22 16 19 C 0.00 -0.04 6.70 -82.10 -0.55 -0.59 16 20 C -0.22 -1.32 11.12 -39.38 -0.44 -1.76 16 21 C -0.06 -0.28 12.30 29.74 0.37 0.09 16 22 O 0.11 0.86 11.20 17.18 0.19 1.05 16 23 N -0.35 -3.55 12.07 33.42 0.40 -3.15 16 24 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 25 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 29 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 30 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 31 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.40 4.74 6.18 -40.82 -0.25 4.48 16 36 H 0.40 3.61 8.48 -40.82 -0.35 3.26 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.22 0.04 8.06 -52.48 -0.42 -0.38 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -33.49 330.81 -5.91 -39.40 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.62 Total: 3.06 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.37 Total: -5.20 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.48 Total: -49.06 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.28 Total: -10.07 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.49 -5.91 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806904160.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.155 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds