Wall clock time and date at job start Tue Mar 31 2020 05:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46932 * 2 1 4 4 C 1.52997 * 109.47520 * 239.99817 * 2 1 3 5 5 N 1.46502 * 109.46882 * 119.99900 * 2 1 3 6 6 C 1.34598 * 125.74695 * 74.97601 * 5 2 1 7 7 N 1.30856 * 107.63895 * 179.97438 * 6 5 2 8 8 C 1.34591 * 107.26556 * 0.02562 * 7 6 5 9 9 C 1.47755 * 126.04760 * 180.26344 * 8 7 6 10 10 O 1.21468 * 119.99605 * 179.68223 * 9 8 7 11 11 O 1.34713 * 120.00053 * 359.69109 * 9 8 7 12 12 C 1.45205 * 116.99659 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46918 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.46867 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47186 * 180.02562 * 14 13 12 16 16 H 1.08008 * 119.99524 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00374 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00120 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00388 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46636 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47133 * 119.99815 * 19 17 15 22 22 H 1.48493 * 109.47432 * 240.00079 * 19 17 15 23 23 N 1.28850 * 125.74278 * 254.97333 * 5 2 1 24 24 H 1.08999 * 109.47526 * 300.00027 * 1 2 3 25 25 H 1.09000 * 109.47332 * 60.00166 * 1 2 3 26 26 H 1.09001 * 109.47286 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46820 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47108 * 299.99512 * 3 2 1 29 29 H 1.08993 * 109.47296 * 59.99980 * 3 2 1 30 30 H 1.09001 * 109.46877 * 300.00295 * 4 2 1 31 31 H 1.09000 * 109.46804 * 59.99694 * 4 2 1 32 32 H 1.08993 * 109.47406 * 180.02562 * 4 2 1 33 33 H 1.07996 * 126.18492 * 0.02562 * 6 5 2 34 34 H 1.08997 * 109.46868 * 299.99335 * 12 11 9 35 35 H 1.08995 * 109.46946 * 59.99624 * 12 11 9 36 36 H 1.08997 * 109.47015 * 299.99498 * 13 12 11 37 37 H 1.08993 * 109.46910 * 60.00054 * 13 12 11 38 38 H 1.09003 * 109.47112 * 299.99735 * 14 13 12 39 39 H 1.09000 * 109.47498 * 59.99540 * 14 13 12 40 40 H 0.96997 * 119.99894 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0182 -0.6906 1.1962 6 6 2.0133 -2.0222 1.3925 7 7 2.5278 -2.2508 2.5738 8 6 2.8499 -1.0577 3.1069 9 6 3.4659 -0.8349 4.4313 10 8 3.7166 0.2942 4.8023 11 8 3.7497 -1.8841 5.2272 12 6 4.3536 -1.5904 6.5146 13 6 4.6005 -2.8967 7.2720 14 6 5.2362 -2.5872 8.6288 15 6 5.4801 -3.8738 9.3745 16 1 5.2083 -4.8179 8.9257 17 6 6.0500 -3.8459 10.6296 18 7 6.3813 -2.6963 11.1760 19 14 6.3516 -5.4407 11.5543 20 1 5.8943 -6.5864 10.7274 21 1 7.8026 -5.5826 11.8364 22 1 5.5982 -5.4212 12.8338 23 7 2.5247 -0.1255 2.2375 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 -1.7489 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7216 -1.2489 33 1 1.6511 -2.7674 0.6999 34 1 5.3012 -1.0738 6.3621 35 1 3.6830 -0.9560 7.0942 36 1 3.6528 -3.4130 7.4245 37 1 5.2709 -3.5314 6.6925 38 1 6.1840 -2.0707 8.4767 39 1 4.5655 -1.9526 9.2080 40 1 6.7826 -2.6767 12.0588 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812696041.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:46 Heat of formation + Delta-G solvation = -9.634165 kcal Electronic energy + Delta-G solvation = -21179.915344 eV Core-core repulsion = 17803.715933 eV Total energy + Delta-G solvation = -3376.199411 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.77564 -39.95397 -37.79766 -36.36888 -33.94136 -32.90973 -31.70973 -31.25312 -28.17959 -28.07511 -27.27974 -25.24544 -23.33231 -22.97262 -20.85951 -20.45616 -20.23187 -17.94253 -17.08207 -16.97061 -16.57390 -16.05254 -16.02762 -15.08066 -14.71889 -14.59547 -14.41819 -13.87009 -13.43844 -13.14451 -13.06011 -12.92988 -12.45401 -12.36160 -12.15703 -12.12418 -11.91879 -11.82450 -11.59490 -10.94444 -10.73918 -10.64793 -10.58966 -10.56905 -10.45902 -10.33906 -9.81454 -9.64026 -9.47562 -9.09703 -8.34140 -5.98810 -4.01331 1.11376 1.71283 1.85169 2.70312 3.16597 3.33992 3.41172 3.46111 3.73694 3.98755 4.01637 4.11702 4.40951 4.48023 4.73487 4.77876 4.90086 4.95736 5.03620 5.07893 5.17245 5.30648 5.37261 5.47925 5.63214 5.64430 5.66944 5.73570 6.05696 6.10288 6.24670 6.47821 6.62194 6.86229 7.05328 7.65942 7.67995 7.77550 8.00049 8.02682 8.41598 9.05245 9.62723 11.12751 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.049451 B = 0.002478 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.081922 B =11297.468808 C =11656.579968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.166 3.834 3 C -0.150 4.150 4 C -0.161 4.161 5 N -0.291 5.291 6 C 0.187 3.813 7 N -0.459 5.459 8 C 0.159 3.841 9 C 0.563 3.437 10 O -0.489 6.489 11 O -0.333 6.333 12 C 0.068 3.932 13 C -0.108 4.108 14 C 0.024 3.976 15 C -0.519 4.519 16 H 0.059 0.941 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.240 5.240 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.225 0.775 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.647 5.647 -28.999 32.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.084 3.916 3 C -0.208 4.208 4 C -0.219 4.219 5 N -0.089 5.089 6 C -0.109 4.109 7 N -0.183 5.183 8 C -0.118 4.118 9 C 0.402 3.598 10 O -0.373 6.373 11 O -0.247 6.247 12 C -0.005 4.005 13 C -0.146 4.146 14 C -0.014 4.014 15 C -0.557 4.557 16 H 0.077 0.923 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.081 5.081 24 H 0.089 0.911 25 H 0.105 0.895 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.241 0.759 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.296 6.410 -28.345 31.555 hybrid contribution 0.095 -0.857 0.376 0.941 sum -12.201 5.552 -27.969 31.016 Atomic orbital electron populations 1.22275 0.91572 1.03778 1.04238 1.21214 0.95424 0.94401 0.80527 1.22016 1.02688 0.92176 1.03891 1.22270 1.02820 1.01226 0.95554 1.47872 1.41302 1.06445 1.13272 1.26472 1.01773 0.86298 0.96314 1.71462 1.14944 1.25491 1.06423 1.22424 1.07018 0.86058 0.96271 1.18783 0.75609 0.83276 0.82098 1.90881 1.49149 1.24072 1.73238 1.86630 1.72432 1.35479 1.30169 1.23651 0.97270 1.01149 0.78381 1.21773 1.01684 0.93481 0.97642 1.19066 0.95838 0.97568 0.88883 1.21220 1.40374 0.92918 1.01186 0.92321 1.25035 0.95633 0.96302 0.97595 1.69981 1.42593 1.24560 1.16312 0.86489 0.77818 0.83698 0.79729 1.19649 1.21015 1.21010 1.74286 1.13299 1.25015 0.95469 0.91150 0.89477 0.91204 0.91170 0.90201 0.90451 0.90994 0.89217 0.91029 0.75917 0.91169 0.91174 0.91958 0.91953 0.96165 0.96164 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.60 8.72 37.16 0.32 -0.27 16 2 C 0.17 0.89 1.23 -131.82 -0.16 0.73 16 3 C -0.15 -0.86 8.04 37.16 0.30 -0.56 16 4 C -0.16 -0.44 8.28 37.16 0.31 -0.13 16 5 N -0.29 -2.79 3.17 -49.84 -0.16 -2.95 16 6 C 0.19 1.77 11.71 -90.48 -1.06 0.71 16 7 N -0.46 -6.63 11.42 -12.38 -0.14 -6.77 16 8 C 0.16 2.59 7.99 -156.33 -1.25 1.34 16 9 C 0.56 10.51 7.97 34.62 0.28 10.79 16 10 O -0.49 -9.97 16.88 -19.24 -0.32 -10.29 16 11 O -0.33 -6.44 10.23 -40.53 -0.41 -6.86 16 12 C 0.07 1.35 5.48 37.16 0.20 1.56 16 13 C -0.11 -2.36 5.53 -26.73 -0.15 -2.51 16 14 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 15 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 16 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 19 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 N -0.24 -3.35 11.09 32.06 0.36 -3.00 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 26 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.58 8.02 -51.93 -0.42 0.17 16 30 H 0.07 0.11 7.34 -51.93 -0.38 -0.27 16 31 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.22 0.95 7.53 -52.49 -0.40 0.55 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 346.21 15.07 5.22 5.22 Total: -1.00 -35.60 346.21 -7.74 -43.34 By element: Atomic # 1 Polarization: -1.23 SS G_CDS: -6.23 Total: -7.46 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.76 Total: -1.61 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.79 Total: -39.27 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.74 Total: -17.15 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.60 -7.74 -43.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812696041.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.703 kcal (2) G-P(sol) polarization free energy of solvation -35.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds