Wall clock time and date at job start Tue Mar 31 2020 05:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46932 * 2 1 4 4 C 1.52997 * 109.47520 * 239.99817 * 2 1 3 5 5 N 1.46502 * 109.46882 * 119.99900 * 2 1 3 6 6 C 1.34598 * 125.74695 * 74.97601 * 5 2 1 7 7 N 1.30856 * 107.63895 * 179.97438 * 6 5 2 8 8 C 1.34591 * 107.26556 * 0.02562 * 7 6 5 9 9 C 1.47755 * 126.04760 * 180.26344 * 8 7 6 10 10 O 1.21468 * 119.99605 * 179.68223 * 9 8 7 11 11 O 1.34713 * 120.00053 * 359.69109 * 9 8 7 12 12 C 1.45205 * 116.99659 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46918 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.46867 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47186 * 180.02562 * 14 13 12 16 16 H 1.08008 * 119.99524 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00374 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00120 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00388 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46636 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47133 * 119.99815 * 19 17 15 22 22 H 1.48493 * 109.47432 * 240.00079 * 19 17 15 23 23 N 1.28850 * 125.74278 * 254.97333 * 5 2 1 24 24 H 1.08999 * 109.47526 * 300.00027 * 1 2 3 25 25 H 1.09000 * 109.47332 * 60.00166 * 1 2 3 26 26 H 1.09001 * 109.47286 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46820 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47108 * 299.99512 * 3 2 1 29 29 H 1.08993 * 109.47296 * 59.99980 * 3 2 1 30 30 H 1.09001 * 109.46877 * 300.00295 * 4 2 1 31 31 H 1.09000 * 109.46804 * 59.99694 * 4 2 1 32 32 H 1.08993 * 109.47406 * 180.02562 * 4 2 1 33 33 H 1.07996 * 126.18492 * 0.02562 * 6 5 2 34 34 H 1.08997 * 109.46868 * 299.99335 * 12 11 9 35 35 H 1.08995 * 109.46946 * 59.99624 * 12 11 9 36 36 H 1.08997 * 109.47015 * 299.99498 * 13 12 11 37 37 H 1.08993 * 109.46910 * 60.00054 * 13 12 11 38 38 H 1.09003 * 109.47112 * 299.99735 * 14 13 12 39 39 H 1.09000 * 109.47498 * 59.99540 * 14 13 12 40 40 H 0.96997 * 119.99894 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0182 -0.6906 1.1962 6 6 2.0133 -2.0222 1.3925 7 7 2.5278 -2.2508 2.5738 8 6 2.8499 -1.0577 3.1069 9 6 3.4659 -0.8349 4.4313 10 8 3.7166 0.2942 4.8023 11 8 3.7497 -1.8841 5.2272 12 6 4.3536 -1.5904 6.5146 13 6 4.6005 -2.8967 7.2720 14 6 5.2362 -2.5872 8.6288 15 6 5.4801 -3.8738 9.3745 16 1 5.2083 -4.8179 8.9257 17 6 6.0500 -3.8459 10.6296 18 7 6.3813 -2.6963 11.1760 19 14 6.3516 -5.4407 11.5543 20 1 5.8943 -6.5864 10.7274 21 1 7.8026 -5.5826 11.8364 22 1 5.5982 -5.4212 12.8338 23 7 2.5247 -0.1255 2.2375 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 -1.7489 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7216 -1.2489 33 1 1.6511 -2.7674 0.6999 34 1 5.3012 -1.0738 6.3621 35 1 3.6830 -0.9560 7.0942 36 1 3.6528 -3.4130 7.4245 37 1 5.2709 -3.5314 6.6925 38 1 6.1840 -2.0707 8.4767 39 1 4.5655 -1.9526 9.2080 40 1 6.7826 -2.6767 12.0588 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812696041.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:46 Heat of formation + Delta-G solvation = -30.854851 kcal Electronic energy + Delta-G solvation = -21180.835542 eV Core-core repulsion = 17803.715933 eV Total energy + Delta-G solvation = -3377.119609 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.68691 -41.45175 -38.36325 -37.90863 -35.96310 -33.89261 -33.60853 -32.23539 -29.21993 -28.47841 -28.39162 -26.62964 -24.81181 -24.12075 -22.21847 -22.03071 -21.19150 -19.05156 -18.68630 -18.10236 -18.07742 -17.33078 -17.30110 -16.49152 -15.96344 -15.69691 -15.10938 -14.98032 -14.81852 -14.15374 -13.91575 -13.82922 -13.77409 -13.30196 -13.23705 -13.11965 -12.85842 -12.75564 -12.51660 -12.45605 -12.41304 -12.14616 -12.13403 -12.00840 -11.57352 -11.53591 -11.51407 -11.46648 -11.23976 -10.70015 -10.57358 -8.21315 -6.32670 -0.04637 0.81729 0.92324 1.41943 1.42406 1.55769 1.59070 1.90730 2.41876 2.97224 3.12489 3.21780 3.65169 3.68966 3.77220 3.79514 3.96611 3.99704 4.35426 4.46219 4.57891 4.60377 4.69898 4.74300 4.77922 4.78075 4.81604 4.85217 5.03545 5.10791 5.12962 5.20756 5.23544 5.32989 5.48951 5.59860 5.63604 5.80450 6.19116 6.37820 6.82816 6.91048 7.36615 8.91234 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.049451 B = 0.002478 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.081922 B =11297.468808 C =11656.579968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.155 3.845 3 C -0.151 4.151 4 C -0.157 4.157 5 N -0.279 5.279 6 C 0.206 3.794 7 N -0.494 5.494 8 C 0.125 3.875 9 C 0.563 3.437 10 O -0.517 6.517 11 O -0.336 6.336 12 C 0.076 3.924 13 C -0.092 4.092 14 C 0.027 3.973 15 C -0.542 4.542 16 H 0.065 0.935 17 C -0.002 4.002 18 N -0.934 5.934 19 Si 0.971 3.029 20 H -0.260 1.260 21 H -0.278 1.278 22 H -0.278 1.278 23 N -0.252 5.252 24 H 0.046 0.954 25 H 0.116 0.884 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.112 0.888 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.057 0.943 33 H 0.279 0.721 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.067 0.933 38 H -0.001 1.001 39 H -0.001 1.001 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.015 4.011 -31.745 34.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.075 3.925 3 C -0.209 4.209 4 C -0.215 4.215 5 N -0.077 5.077 6 C -0.088 4.088 7 N -0.220 5.220 8 C -0.150 4.150 9 C 0.404 3.596 10 O -0.403 6.403 11 O -0.250 6.250 12 C 0.003 3.997 13 C -0.130 4.130 14 C -0.011 4.011 15 C -0.579 4.579 16 H 0.083 0.917 17 C -0.200 4.200 18 N -0.574 5.574 19 Si 0.795 3.205 20 H -0.184 1.184 21 H -0.203 1.203 22 H -0.203 1.203 23 N -0.096 5.096 24 H 0.065 0.935 25 H 0.135 0.865 26 H 0.102 0.898 27 H 0.071 0.929 28 H 0.131 0.869 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.135 0.865 32 H 0.077 0.923 33 H 0.294 0.706 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.017 0.983 39 H 0.018 0.982 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.679 4.772 -31.124 34.331 hybrid contribution 0.444 -0.262 1.048 1.168 sum -13.235 4.510 -30.076 33.168 Atomic orbital electron populations 1.22310 0.89793 1.04835 1.04548 1.21791 0.96692 0.94103 0.79865 1.22052 1.01579 0.92943 1.04305 1.22330 1.02032 1.02456 0.94647 1.48383 1.39446 1.06964 1.12944 1.27394 0.99198 0.86918 0.95283 1.71373 1.16639 1.25285 1.08694 1.21978 1.09619 0.87466 0.95912 1.19191 0.74954 0.82593 0.82827 1.90848 1.50549 1.24833 1.74097 1.86599 1.72543 1.36004 1.29851 1.23365 0.97468 0.99906 0.78936 1.21468 1.01521 0.94440 0.95566 1.18939 0.94665 0.96455 0.90997 1.21638 1.40595 0.93798 1.01917 0.91727 1.26023 0.95156 1.00187 0.98639 1.70110 1.43292 1.27087 1.16906 0.85315 0.77887 0.79102 0.78230 1.18431 1.20325 1.20316 1.74217 1.13452 1.25538 0.96385 0.93458 0.86550 0.89782 0.92918 0.86904 0.92927 0.88921 0.86507 0.92344 0.70617 0.91182 0.91189 0.91441 0.91436 0.98253 0.98248 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 8.72 71.98 0.63 -0.03 16 2 C 0.16 1.26 1.23 3.60 0.00 1.26 16 3 C -0.15 -1.55 8.04 71.98 0.58 -0.97 16 4 C -0.16 -0.23 8.28 71.98 0.60 0.36 16 5 N -0.28 -4.92 3.17 -311.59 -0.99 -5.91 16 6 C 0.21 3.38 11.71 180.30 2.11 5.49 16 7 N -0.49 -13.92 11.42 -193.09 -2.21 -16.12 16 8 C 0.13 4.14 7.99 137.07 1.10 5.24 16 9 C 0.56 21.87 7.97 70.34 0.56 22.43 16 10 O -0.52 -22.10 16.88 19.94 0.34 -21.77 16 11 O -0.34 -13.35 10.23 -56.22 -0.58 -13.93 16 12 C 0.08 3.13 5.48 71.98 0.39 3.52 16 13 C -0.09 -4.10 5.53 30.60 0.17 -3.93 16 14 C 0.03 1.45 4.97 29.85 0.15 1.60 16 15 C -0.54 -31.52 9.11 25.60 0.23 -31.28 16 16 H 0.06 3.60 7.74 -2.91 -0.02 3.57 16 17 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 18 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 19 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 20 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 N -0.25 -7.11 11.09 -52.48 -0.58 -7.70 16 24 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16 26 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.05 0.80 8.02 -2.39 -0.02 0.78 16 30 H 0.09 -0.21 7.34 -2.39 -0.02 -0.23 16 31 H 0.12 -0.39 8.14 -2.39 -0.02 -0.41 16 32 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.28 0.99 7.53 -2.91 -0.02 0.97 16 34 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -80.46 346.21 6.30 -74.16 By element: Atomic # 1 Polarization: -3.22 SS G_CDS: 1.02 Total: -2.20 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 6.98 Total: 4.01 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -3.49 Total: -87.32 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -0.24 Total: -35.70 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -80.46 6.30 -74.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812696041.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.305 kcal (2) G-P(sol) polarization free energy of solvation -80.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds