Wall clock time and date at job start Tue Mar 31 2020 05:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 114.00171 * 2 1 4 4 C 1.52998 * 109.47212 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47112 * 304.99811 * 4 3 2 6 6 C 1.52997 * 109.47185 * 65.00055 * 4 3 2 7 7 C 1.53000 * 109.46931 * 185.00051 * 4 3 2 8 8 H 1.08996 * 109.47026 * 299.99812 * 7 4 3 9 9 C 1.52998 * 109.46931 * 179.97438 * 7 4 3 10 10 C 1.50705 * 109.46992 * 60.00030 * 7 4 3 11 11 O 1.21299 * 119.99726 * 0.02562 * 10 7 4 12 12 N 1.34777 * 119.99695 * 179.97438 * 10 7 4 13 13 C 1.40597 * 119.99674 * 179.97438 * 12 10 7 14 14 C 1.40648 * 126.08199 * 359.97438 * 13 12 10 15 15 N 1.30907 * 108.38289 * 179.77574 * 14 13 12 16 16 N 1.40067 * 108.41135 * 0.38341 * 15 14 13 17 17 C 1.37320 * 126.07294 * 179.87911 * 16 15 14 18 18 H 1.08002 * 120.00430 * 179.69232 * 17 16 15 19 19 C 1.38992 * 119.99664 * 359.41108 * 17 16 15 20 20 N 1.31294 * 120.00157 * 0.27652 * 19 17 16 21 21 Si 1.86803 * 119.99838 * 180.27798 * 19 17 16 22 22 H 1.48498 * 109.47174 * 90.00076 * 21 19 17 23 23 H 1.48501 * 109.47062 * 210.00027 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99826 * 21 19 17 25 25 C 1.35682 * 126.07675 * 180.02562 * 13 12 10 26 26 H 1.08996 * 109.46775 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47020 * 299.99896 * 1 2 3 28 28 H 1.09000 * 109.47126 * 59.99594 * 1 2 3 29 29 H 1.09002 * 109.46486 * 60.00228 * 3 2 1 30 30 H 1.08993 * 109.46982 * 300.00430 * 3 2 1 31 31 H 1.09009 * 109.47108 * 60.00074 * 6 4 3 32 32 H 1.08998 * 109.47576 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.47469 * 299.99879 * 6 4 3 34 34 H 1.09009 * 109.47391 * 180.02562 * 9 7 4 35 35 H 1.09004 * 109.47414 * 299.99763 * 9 7 4 36 36 H 1.08995 * 109.47169 * 60.00161 * 9 7 4 37 37 H 0.96997 * 119.99849 * 0.02562 * 12 10 7 38 38 H 1.08000 * 125.80726 * 0.02562 * 14 13 12 39 39 H 0.96996 * 120.00263 * 179.97438 * 20 19 17 40 40 H 1.07994 * 126.25033 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8515 0.5683 0.8409 6 6 3.9952 0.5369 -1.3083 7 6 4.1574 2.5769 0.1251 8 1 3.8414 3.1933 -0.7165 9 6 5.6826 2.4560 0.1251 10 6 3.7045 3.2149 1.4131 11 8 2.9581 2.6148 2.1575 12 7 4.1297 4.4518 1.7383 13 6 3.7067 5.0472 2.9398 14 6 2.8458 4.4716 3.8913 15 7 2.6886 5.3221 4.8739 16 7 3.4328 6.4733 4.5858 17 6 3.5239 7.5951 5.3725 18 1 4.1332 8.4287 5.0559 19 6 2.8271 7.6602 6.5734 20 7 2.0862 6.6469 6.9582 21 14 2.9447 9.1894 7.6398 22 1 1.8757 10.1452 7.2542 23 1 2.7801 8.8118 9.0665 24 1 4.2720 9.8267 7.4464 25 6 4.0559 6.2798 3.3868 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8464 -0.8899 31 1 3.6792 1.1534 -2.1499 32 1 5.0818 0.4512 -1.3090 33 1 3.5522 -0.4549 -1.3979 34 1 6.1257 3.4479 0.2151 35 1 5.9983 1.8397 0.9669 36 1 6.0104 1.9944 -0.8063 37 1 4.7268 4.9315 1.1432 38 1 2.3946 3.4926 3.8248 39 1 1.6002 6.6921 7.7965 40 1 4.7073 6.9801 2.8854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813237109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:32 Heat of formation + Delta-G solvation = -8.776368 kcal Electronic energy + Delta-G solvation = -22102.707728 eV Core-core repulsion = 18726.545514 eV Total energy + Delta-G solvation = -3376.162214 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.16907 -39.10110 -37.65165 -35.41986 -34.22522 -33.16433 -30.56146 -30.08362 -27.72613 -27.22303 -26.02646 -24.91355 -23.69982 -21.36803 -20.75369 -19.48933 -19.31839 -17.50219 -16.77160 -16.19198 -15.78117 -15.44494 -15.41289 -15.09994 -14.54552 -14.18901 -13.82316 -13.62610 -13.33963 -13.07152 -12.90451 -12.59426 -12.16706 -12.02814 -11.72218 -11.60146 -11.43469 -11.39504 -11.26239 -11.14755 -10.92123 -10.74087 -10.53436 -10.51896 -10.12207 -9.53846 -9.14561 -8.89189 -8.76040 -8.04709 -6.67990 -6.54929 -4.21941 2.84194 3.04380 3.05035 3.10279 3.61523 3.68854 3.84120 3.89135 4.43586 4.70586 4.78656 4.89809 5.02868 5.03211 5.21004 5.34153 5.35764 5.41457 5.45398 5.50739 5.63155 5.69249 5.75557 5.82752 5.88322 6.02297 6.12913 6.25375 6.30512 6.39316 6.48972 6.92280 6.97544 7.15478 7.26291 7.30281 7.86970 8.20433 8.31080 8.65235 8.89502 9.39101 9.68537 10.41119 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029812 B = 0.003572 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.991876 B = 7836.455948 C = 8598.136127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.052 3.948 4 C -0.067 4.067 5 H 0.086 0.914 6 C -0.145 4.145 7 C -0.102 4.102 8 H 0.093 0.907 9 C -0.144 4.144 10 C 0.499 3.501 11 O -0.531 6.531 12 N -0.624 5.624 13 C -0.060 4.060 14 C -0.033 4.033 15 N -0.261 5.261 16 N -0.143 5.143 17 C -0.324 4.324 18 H 0.116 0.884 19 C 0.046 3.954 20 N -0.770 5.770 21 Si 0.934 3.066 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.264 1.264 25 C -0.085 4.085 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.396 0.604 38 H 0.176 0.824 39 H 0.274 0.726 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.619 -6.098 -14.487 16.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C -0.024 4.024 4 C -0.086 4.086 5 H 0.104 0.896 6 C -0.202 4.202 7 C -0.123 4.123 8 H 0.112 0.888 9 C -0.202 4.202 10 C 0.285 3.715 11 O -0.409 6.409 12 N -0.265 5.265 13 C -0.165 4.165 14 C -0.209 4.209 15 N -0.092 5.092 16 N 0.089 4.911 17 C -0.456 4.456 18 H 0.133 0.867 19 C -0.171 4.171 20 N -0.397 5.397 21 Si 0.758 3.242 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.236 4.236 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.229 0.771 38 H 0.192 0.808 39 H 0.085 0.915 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.483 -6.547 -12.628 14.439 hybrid contribution 0.567 1.158 -0.731 1.482 sum 3.050 -5.389 -13.359 14.724 Atomic orbital electron populations 1.22670 0.81515 1.02147 0.99962 1.87784 1.19257 1.28577 1.95499 1.22968 0.93296 0.84579 1.01539 1.20834 0.93564 0.94767 0.99454 0.89559 1.21861 1.00903 1.01175 0.96263 1.21270 0.97516 0.97144 0.96393 0.88844 1.21820 0.92762 1.02620 1.02950 1.20395 0.81806 0.81314 0.87962 1.90541 1.36173 1.62398 1.51787 1.42568 1.47541 1.15955 1.20479 1.17304 1.11499 0.95774 0.91972 1.24103 1.02561 1.01221 0.93012 1.78248 1.17321 0.92620 1.21016 1.44541 1.25438 1.10665 1.10448 1.19864 1.31244 0.92841 1.01676 0.86667 1.25635 0.95148 0.98727 0.97562 1.70216 1.21040 1.28401 1.20037 0.85836 0.79363 0.80118 0.78874 1.19612 1.20086 1.18821 1.21264 1.10139 0.98618 0.93564 0.90087 0.93874 0.94617 0.89737 0.94596 0.93043 0.92430 0.91829 0.92014 0.91819 0.91274 0.77124 0.80766 0.91487 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.39 -5.66 10.24 -35.23 -0.36 -6.02 16 3 C 0.05 0.74 5.05 37.16 0.19 0.93 16 4 C -0.07 -0.85 1.85 -90.62 -0.17 -1.01 16 5 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 6 C -0.14 -1.43 8.74 37.16 0.32 -1.11 16 7 C -0.10 -1.20 2.32 -91.77 -0.21 -1.42 16 8 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 9 C -0.14 -1.39 8.74 37.16 0.32 -1.06 16 10 C 0.50 8.41 6.80 -10.98 -0.07 8.34 16 11 O -0.53 -11.00 10.82 5.54 0.06 -10.94 16 12 N -0.62 -10.85 5.36 -10.00 -0.05 -10.91 16 13 C -0.06 -1.38 6.90 -83.84 -0.58 -1.96 16 14 C -0.03 -0.88 10.85 -17.04 -0.18 -1.07 16 15 N -0.26 -7.64 10.40 30.80 0.32 -7.32 16 16 N -0.14 -3.95 3.74 -11.41 -0.04 -3.99 16 17 C -0.32 -8.61 10.25 -14.81 -0.15 -8.77 16 18 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 19 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 20 N -0.77 -21.66 11.81 55.50 0.66 -21.00 16 21 Si 0.93 18.97 29.55 -169.99 -5.02 13.95 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 25 C -0.08 -2.00 11.49 -16.39 -0.19 -2.19 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 1.44 5.42 -51.93 -0.28 1.16 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 32 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 33 H 0.06 0.67 7.82 -51.93 -0.41 0.27 16 34 H 0.06 0.53 7.56 -51.92 -0.39 0.14 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.53 6.43 -51.93 -0.33 0.19 16 37 H 0.40 5.31 8.24 -40.82 -0.34 4.98 16 38 H 0.18 4.57 5.92 -52.49 -0.31 4.26 16 39 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.14 2.82 8.06 -52.49 -0.42 2.40 16 LS Contribution 329.85 15.07 4.97 4.97 Total: -1.00 -33.30 329.85 -4.92 -38.22 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -5.74 Total: 9.74 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 0.29 Total: -6.71 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.88 Total: -43.22 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.30 Total: -16.96 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.30 -4.92 -38.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813237109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.446 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds