Wall clock time and date at job start Tue Mar 31 2020 05:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 114.00171 * 2 1 4 4 C 1.52998 * 109.47212 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47112 * 304.99811 * 4 3 2 6 6 C 1.52997 * 109.47185 * 65.00055 * 4 3 2 7 7 C 1.53000 * 109.46931 * 185.00051 * 4 3 2 8 8 H 1.08996 * 109.47026 * 299.99812 * 7 4 3 9 9 C 1.52998 * 109.46931 * 179.97438 * 7 4 3 10 10 C 1.50705 * 109.46992 * 60.00030 * 7 4 3 11 11 O 1.21299 * 119.99726 * 0.02562 * 10 7 4 12 12 N 1.34777 * 119.99695 * 179.97438 * 10 7 4 13 13 C 1.40597 * 119.99674 * 179.97438 * 12 10 7 14 14 C 1.40648 * 126.08199 * 359.97438 * 13 12 10 15 15 N 1.30907 * 108.38289 * 179.77574 * 14 13 12 16 16 N 1.40067 * 108.41135 * 0.38341 * 15 14 13 17 17 C 1.37320 * 126.07294 * 179.87911 * 16 15 14 18 18 H 1.08002 * 120.00430 * 179.69232 * 17 16 15 19 19 C 1.38992 * 119.99664 * 359.41108 * 17 16 15 20 20 N 1.31294 * 120.00157 * 0.27652 * 19 17 16 21 21 Si 1.86803 * 119.99838 * 180.27798 * 19 17 16 22 22 H 1.48498 * 109.47174 * 90.00076 * 21 19 17 23 23 H 1.48501 * 109.47062 * 210.00027 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99826 * 21 19 17 25 25 C 1.35682 * 126.07675 * 180.02562 * 13 12 10 26 26 H 1.08996 * 109.46775 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47020 * 299.99896 * 1 2 3 28 28 H 1.09000 * 109.47126 * 59.99594 * 1 2 3 29 29 H 1.09002 * 109.46486 * 60.00228 * 3 2 1 30 30 H 1.08993 * 109.46982 * 300.00430 * 3 2 1 31 31 H 1.09009 * 109.47108 * 60.00074 * 6 4 3 32 32 H 1.08998 * 109.47576 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.47469 * 299.99879 * 6 4 3 34 34 H 1.09009 * 109.47391 * 180.02562 * 9 7 4 35 35 H 1.09004 * 109.47414 * 299.99763 * 9 7 4 36 36 H 1.08995 * 109.47169 * 60.00161 * 9 7 4 37 37 H 0.96997 * 119.99849 * 0.02562 * 12 10 7 38 38 H 1.08000 * 125.80726 * 0.02562 * 14 13 12 39 39 H 0.96996 * 120.00263 * 179.97438 * 20 19 17 40 40 H 1.07994 * 126.25033 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8515 0.5683 0.8409 6 6 3.9952 0.5369 -1.3083 7 6 4.1574 2.5769 0.1251 8 1 3.8414 3.1933 -0.7165 9 6 5.6826 2.4560 0.1251 10 6 3.7045 3.2149 1.4131 11 8 2.9581 2.6148 2.1575 12 7 4.1297 4.4518 1.7383 13 6 3.7067 5.0472 2.9398 14 6 2.8458 4.4716 3.8913 15 7 2.6886 5.3221 4.8739 16 7 3.4328 6.4733 4.5858 17 6 3.5239 7.5951 5.3725 18 1 4.1332 8.4287 5.0559 19 6 2.8271 7.6602 6.5734 20 7 2.0862 6.6469 6.9582 21 14 2.9447 9.1894 7.6398 22 1 1.8757 10.1452 7.2542 23 1 2.7801 8.8118 9.0665 24 1 4.2720 9.8267 7.4464 25 6 4.0559 6.2798 3.3868 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8464 -0.8899 31 1 3.6792 1.1534 -2.1499 32 1 5.0818 0.4512 -1.3090 33 1 3.5522 -0.4549 -1.3979 34 1 6.1257 3.4479 0.2151 35 1 5.9983 1.8397 0.9669 36 1 6.0104 1.9944 -0.8063 37 1 4.7268 4.9315 1.1432 38 1 2.3946 3.4926 3.8248 39 1 1.6002 6.6921 7.7965 40 1 4.7073 6.9801 2.8854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813237109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:31 Heat of formation + Delta-G solvation = -32.451300 kcal Electronic energy + Delta-G solvation = -22103.734350 eV Core-core repulsion = 18726.545514 eV Total energy + Delta-G solvation = -3377.188836 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.79304 -40.70642 -38.82209 -36.52468 -35.88191 -34.96728 -32.27831 -31.40355 -29.43114 -28.22206 -27.07350 -26.68282 -24.83560 -22.93021 -22.40557 -21.19055 -20.60709 -19.27751 -18.11565 -17.40869 -17.29839 -16.93323 -16.72353 -16.41741 -15.94702 -15.68027 -15.26604 -14.98786 -14.81688 -14.57370 -14.08294 -13.62578 -13.50289 -13.27077 -13.14057 -12.90911 -12.85983 -12.83427 -12.47797 -12.35934 -12.15298 -12.08840 -11.79711 -11.62644 -11.48727 -11.00085 -10.82065 -10.69227 -10.20100 -10.09467 -8.50035 -8.46672 -6.23840 1.23465 1.39677 1.55147 1.57918 1.88612 2.07030 2.34356 2.54688 2.83973 2.93591 3.09425 3.79634 3.87636 3.95188 4.24541 4.41275 4.44388 4.45052 4.49570 4.51794 4.56604 4.63133 4.75999 4.80085 4.93629 4.96960 5.01007 5.03871 5.13692 5.15403 5.23024 5.30688 5.42079 5.52229 5.57333 5.96727 6.25803 6.33640 6.74968 6.81288 7.44600 7.50051 7.70056 8.52821 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029812 B = 0.003572 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.991876 B = 7836.455948 C = 8598.136127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.052 3.948 4 C -0.067 4.067 5 H 0.058 0.942 6 C -0.136 4.136 7 C -0.087 4.087 8 H 0.126 0.874 9 C -0.142 4.142 10 C 0.494 3.506 11 O -0.573 6.573 12 N -0.616 5.616 13 C -0.043 4.043 14 C -0.061 4.061 15 N -0.312 5.312 16 N -0.169 5.169 17 C -0.355 4.355 18 H 0.141 0.859 19 C -0.007 4.007 20 N -0.826 5.826 21 Si 1.020 2.980 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.243 1.243 25 C -0.082 4.082 26 H 0.101 0.899 27 H 0.028 0.972 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.099 0.901 37 H 0.419 0.581 38 H 0.165 0.835 39 H 0.276 0.724 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.567 -4.783 -17.133 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C -0.024 4.024 4 C -0.086 4.086 5 H 0.076 0.924 6 C -0.193 4.193 7 C -0.108 4.108 8 H 0.144 0.856 9 C -0.199 4.199 10 C 0.283 3.717 11 O -0.452 6.452 12 N -0.261 5.261 13 C -0.149 4.149 14 C -0.236 4.236 15 N -0.144 5.144 16 N 0.062 4.938 17 C -0.486 4.486 18 H 0.159 0.841 19 C -0.218 4.218 20 N -0.455 5.455 21 Si 0.838 3.162 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.166 1.166 25 C -0.232 4.232 26 H 0.119 0.881 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.256 0.744 38 H 0.181 0.819 39 H 0.085 0.915 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 4.466 -5.239 -15.339 16.813 hybrid contribution -0.062 0.616 -0.033 0.620 sum 4.404 -4.624 -15.372 16.646 Atomic orbital electron populations 1.22851 0.80285 1.03601 1.00112 1.87761 1.20751 1.28807 1.95534 1.22937 0.94555 0.84406 1.00547 1.20854 0.92502 0.95071 1.00197 0.92376 1.21798 1.02078 1.00607 0.94802 1.21310 0.99151 0.96472 0.93899 0.85587 1.21868 0.90483 1.03634 1.03913 1.21505 0.80421 0.80625 0.89165 1.90551 1.37785 1.63306 1.53582 1.42544 1.48092 1.16389 1.19066 1.17384 1.09356 0.95265 0.92917 1.24128 1.04220 1.01001 0.94283 1.78139 1.19293 0.94144 1.22860 1.44834 1.26364 1.10638 1.12002 1.20626 1.32185 0.93409 1.02397 0.84133 1.26888 0.93990 1.02206 0.98758 1.70406 1.22814 1.31392 1.20844 0.84589 0.80289 0.75274 0.76018 1.18889 1.20299 1.16635 1.22018 1.09464 0.99323 0.92399 0.88078 0.95291 0.92864 0.93476 0.92693 0.91220 0.90418 0.92758 0.90471 0.93471 0.88208 0.74375 0.81856 0.91480 0.79486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.88 16 2 O -0.41 -11.79 10.24 -148.98 -1.53 -13.32 16 3 C 0.05 1.45 5.05 71.98 0.36 1.81 16 4 C -0.07 -1.60 1.85 -10.80 -0.02 -1.62 16 5 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 6 C -0.14 -2.26 8.74 71.98 0.63 -1.63 16 7 C -0.09 -1.84 2.32 -11.54 -0.03 -1.86 16 8 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 9 C -0.14 -2.21 8.74 71.98 0.63 -1.58 16 10 C 0.49 16.35 6.80 87.66 0.60 16.95 16 11 O -0.57 -24.68 10.82 -3.09 -0.03 -24.71 16 12 N -0.62 -20.49 5.36 -303.92 -1.63 -22.12 16 13 C -0.04 -1.97 6.90 37.73 0.26 -1.71 16 14 C -0.06 -3.38 10.85 85.42 0.93 -2.46 16 15 N -0.31 -19.14 10.40 -56.47 -0.59 -19.73 16 16 N -0.17 -9.48 3.74 -190.01 -0.71 -10.19 16 17 C -0.36 -18.95 10.25 84.01 0.86 -18.09 16 18 H 0.14 6.46 7.83 -2.91 -0.02 6.44 16 19 C -0.01 -0.37 5.50 84.95 0.47 0.09 16 20 N -0.83 -48.40 11.81 21.66 0.26 -48.14 16 21 Si 1.02 38.84 29.55 68.60 2.03 40.87 16 22 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 23 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 24 H -0.24 -8.36 7.11 99.48 0.71 -7.65 16 25 C -0.08 -3.78 11.49 83.37 0.96 -2.82 16 26 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 1.68 5.42 -2.39 -0.01 1.67 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.08 0.99 6.43 -2.39 -0.02 0.97 16 33 H 0.05 1.03 7.82 -2.39 -0.02 1.01 16 34 H 0.08 0.99 7.56 -2.38 -0.02 0.98 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 1.01 6.43 -2.39 -0.02 0.99 16 37 H 0.42 9.87 8.24 -92.71 -0.76 9.10 16 38 H 0.16 9.23 5.92 -2.91 -0.02 9.21 16 39 H 0.28 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.19 6.74 8.06 -2.91 -0.02 6.72 16 Total: -1.00 -78.42 329.85 4.98 -73.44 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: 0.29 Total: 34.93 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 6.89 Total: -11.03 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -2.67 Total: -100.18 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -1.56 Total: -38.03 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -78.42 4.98 -73.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813237109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.991 kcal (2) G-P(sol) polarization free energy of solvation -78.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds