Wall clock time and date at job start Tue Mar 31 2020 05:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47202 * 2 1 4 4 C 1.53003 * 109.46863 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46863 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47202 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47153 * 54.99493 * 6 5 4 8 8 O 1.42903 * 109.46550 * 294.99891 * 6 5 4 9 9 C 1.50697 * 109.47251 * 175.00156 * 6 5 4 10 10 O 1.21305 * 120.00005 * 114.99716 * 9 6 5 11 11 N 1.34779 * 119.99968 * 295.00004 * 9 6 5 12 12 C 1.40586 * 120.00116 * 180.02562 * 11 9 6 13 13 C 1.40657 * 126.08252 * 359.97039 * 12 11 9 14 14 N 1.30913 * 108.38554 * 179.77427 * 13 12 11 15 15 N 1.40060 * 108.40658 * 0.38728 * 14 13 12 16 16 C 1.37327 * 126.06997 * 179.87349 * 15 14 13 17 17 H 1.07998 * 120.00582 * 185.44908 * 16 15 14 18 18 C 1.38989 * 119.99638 * 5.17669 * 16 15 14 19 19 N 1.31295 * 120.00227 * 354.31128 * 18 16 15 20 20 Si 1.86794 * 119.99993 * 174.31104 * 18 16 15 21 21 H 1.48498 * 109.47527 * 94.97968 * 20 18 16 22 22 H 1.48507 * 109.47412 * 214.98035 * 20 18 16 23 23 H 1.48504 * 109.47189 * 334.98217 * 20 18 16 24 24 C 1.35681 * 126.08287 * 179.97438 * 12 11 9 25 25 H 1.09007 * 109.46586 * 60.00424 * 1 2 3 26 26 H 1.08996 * 109.46837 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47457 * 300.00223 * 1 2 3 28 28 H 1.09001 * 109.47086 * 240.00014 * 2 1 3 29 29 H 1.08999 * 109.46916 * 120.00137 * 2 1 3 30 30 H 1.09001 * 109.47088 * 60.00015 * 3 2 1 31 31 H 1.08994 * 109.46841 * 299.99964 * 3 2 1 32 32 H 1.09001 * 109.46906 * 60.00332 * 4 3 2 33 33 H 1.08999 * 109.47435 * 300.00248 * 4 3 2 34 34 H 1.08995 * 109.47097 * 59.99984 * 5 4 3 35 35 H 1.09008 * 109.47039 * 300.00301 * 5 4 3 36 36 H 0.96700 * 114.00326 * 300.00199 * 8 6 5 37 37 H 0.97005 * 119.99650 * 359.97438 * 11 9 6 38 38 H 1.07991 * 125.80439 * 0.02562 * 13 12 11 39 39 H 0.96997 * 120.00133 * 179.97438 * 19 18 16 40 40 H 1.07998 * 126.24575 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 6 5.6101 2.8849 0.0013 7 1 5.9734 2.2958 -0.8407 8 8 6.0863 2.3150 1.2222 9 6 6.1125 4.3004 -0.1219 10 8 6.7332 4.8051 0.7899 11 7 5.8720 5.0054 -1.2451 12 6 6.3411 6.3257 -1.3602 13 6 7.0702 7.0336 -0.3877 14 7 7.3321 8.2277 -0.8560 15 7 6.7753 8.3323 -2.1369 16 6 6.8327 9.4331 -2.9560 17 1 6.2935 9.4387 -3.8917 18 6 7.5803 10.5422 -2.5782 19 7 8.1398 10.5834 -1.3911 20 14 7.7889 11.9743 -3.7592 21 1 6.7636 13.0086 -3.4692 22 1 9.1435 12.5598 -3.5929 23 1 7.6256 11.4930 -5.1546 24 6 6.1711 7.1438 -2.4292 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8892 33 1 3.9330 0.9287 0.8908 34 1 3.7164 3.3985 0.8912 35 1 3.7171 3.3991 -0.8887 36 1 5.8009 2.7890 2.0152 37 1 5.3759 4.6016 -1.9743 38 1 7.3672 6.6549 0.5790 39 1 8.6618 11.3573 -1.1276 40 1 5.6515 6.8995 -3.3439 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822879081.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:35 Heat of formation + Delta-G solvation = -31.696172 kcal Electronic energy + Delta-G solvation = -21343.385738 eV Core-core repulsion = 17966.229646 eV Total energy + Delta-G solvation = -3377.156091 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.10126 -39.02680 -36.99070 -35.75477 -34.25373 -33.25557 -32.38227 -30.28430 -29.02296 -27.45783 -25.30420 -24.34854 -21.84819 -21.27597 -21.03985 -20.36424 -19.42913 -17.74214 -17.17227 -16.33317 -15.87045 -15.53344 -15.42640 -14.93829 -14.33381 -14.29007 -13.88115 -13.60839 -13.51290 -13.30369 -13.02267 -12.91232 -12.20150 -12.08591 -11.73963 -11.59247 -11.42305 -11.30334 -11.26559 -11.10839 -11.08055 -10.95634 -10.71344 -10.53748 -10.47171 -10.16625 -9.17849 -8.99182 -8.79704 -8.06862 -6.71621 -6.57142 -4.23865 2.76490 3.00492 3.04498 3.10021 3.53397 3.65515 3.86489 4.23877 4.41299 4.52299 4.65335 4.71719 4.74807 4.87720 4.97621 5.00504 5.11294 5.20131 5.30155 5.44776 5.52004 5.54629 5.67950 5.71640 5.82156 5.84438 5.97339 6.11128 6.17860 6.22928 6.44184 6.88199 6.94490 7.09919 7.22973 7.53528 7.85120 8.15449 8.26960 8.61179 8.81896 9.37090 9.66024 10.39184 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030319 B = 0.002913 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.291281 B = 9608.405491 C =10307.842344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.147 4.147 6 C 0.098 3.902 7 H 0.119 0.881 8 O -0.540 6.540 9 C 0.467 3.533 10 O -0.531 6.531 11 N -0.620 5.620 12 C -0.062 4.062 13 C -0.033 4.033 14 N -0.261 5.261 15 N -0.142 5.142 16 C -0.324 4.324 17 H 0.116 0.884 18 C 0.046 3.954 19 N -0.769 5.769 20 Si 0.934 3.066 21 H -0.271 1.271 22 H -0.275 1.275 23 H -0.263 1.263 24 C -0.084 4.084 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.382 0.618 37 H 0.396 0.604 38 H 0.175 0.825 39 H 0.275 0.725 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.425 -15.861 -0.687 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.152 4.152 5 C -0.186 4.186 6 C 0.035 3.965 7 H 0.137 0.863 8 O -0.344 6.344 9 C 0.252 3.748 10 O -0.408 6.408 11 N -0.264 5.264 12 C -0.167 4.167 13 C -0.209 4.209 14 N -0.092 5.092 15 N 0.090 4.910 16 C -0.456 4.456 17 H 0.134 0.866 18 C -0.171 4.171 19 N -0.396 5.396 20 Si 0.758 3.242 21 H -0.197 1.197 22 H -0.200 1.200 23 H -0.187 1.187 24 C -0.235 4.235 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.231 0.769 37 H 0.229 0.771 38 H 0.192 0.808 39 H 0.085 0.915 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.999 -14.656 -0.033 17.742 hybrid contribution -0.873 0.086 -0.847 1.219 sum -10.872 -14.570 -0.880 18.201 Atomic orbital electron populations 1.21787 0.96055 1.01447 1.01827 1.21534 0.95703 0.97040 1.01999 1.21644 0.95438 0.96682 1.02180 1.21547 0.95054 0.95804 1.02826 1.22280 0.94161 0.98324 1.03803 1.21790 0.93567 0.91360 0.89757 0.86342 1.86537 1.77594 1.55064 1.15244 1.21348 0.81813 0.88648 0.82941 1.90611 1.40546 1.70345 1.39303 1.42567 1.54088 1.12241 1.17487 1.17299 1.14654 0.86203 0.98583 1.24100 1.03391 0.92661 1.00705 1.78250 1.21433 1.16976 0.92565 1.44552 1.29251 1.07265 1.09948 1.19870 1.32408 0.91652 1.01686 0.86615 1.25650 0.95466 0.99345 0.96650 1.70222 1.24198 1.28400 1.16769 0.85821 0.78434 0.79979 0.79970 1.19663 1.20031 1.18744 1.21271 1.12674 0.89077 1.00442 0.92772 0.92934 0.92787 0.92080 0.92060 0.92012 0.91963 0.91809 0.91119 0.90896 0.90448 0.76896 0.77053 0.80821 0.91454 0.83700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.13 -0.86 5.93 -26.73 -0.16 -1.02 16 3 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 4 C -0.11 -0.92 5.11 -26.73 -0.14 -1.06 16 5 C -0.15 -1.39 4.86 -26.73 -0.13 -1.52 16 6 C 0.10 1.18 3.38 -27.88 -0.09 1.09 16 7 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 8 O -0.54 -7.01 12.53 -55.09 -0.69 -7.70 16 9 C 0.47 7.98 7.14 -10.99 -0.08 7.90 16 10 O -0.53 -11.39 13.48 -14.32 -0.19 -11.59 16 11 N -0.62 -10.74 5.37 -10.00 -0.05 -10.79 16 12 C -0.06 -1.42 6.90 -83.84 -0.58 -2.00 16 13 C -0.03 -0.88 10.85 -17.03 -0.18 -1.07 16 14 N -0.26 -7.67 10.42 30.80 0.32 -7.35 16 15 N -0.14 -3.93 3.74 -11.41 -0.04 -3.97 16 16 C -0.32 -8.59 10.24 -14.81 -0.15 -8.74 16 17 H 0.12 2.73 7.84 -52.49 -0.41 2.32 16 18 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 19 N -0.77 -21.63 11.83 55.50 0.66 -20.97 16 20 Si 0.93 18.94 29.55 -169.99 -5.02 13.92 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 23 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 24 C -0.08 -1.97 11.49 -16.39 -0.19 -2.16 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.61 7.82 -51.93 -0.41 0.20 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.68 7.77 -51.92 -0.40 0.27 16 36 H 0.38 4.26 8.79 45.56 0.40 4.66 16 37 H 0.40 5.17 8.53 -40.82 -0.35 4.82 16 38 H 0.18 4.62 5.92 -52.49 -0.31 4.31 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.15 2.82 8.06 -52.49 -0.42 2.39 16 LS Contribution 339.22 15.07 5.11 5.11 Total: -1.00 -33.92 339.22 -6.75 -40.67 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -5.26 Total: 11.82 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -1.57 Total: -9.14 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.88 Total: -43.08 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.88 Total: -19.29 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.92 -6.75 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822879081.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.974 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds