Wall clock time and date at job start Tue Mar 31 2020 05:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47202 * 2 1 4 4 C 1.53003 * 109.46863 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46863 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47202 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47153 * 54.99493 * 6 5 4 8 8 O 1.42903 * 109.46550 * 294.99891 * 6 5 4 9 9 C 1.50697 * 109.47251 * 175.00156 * 6 5 4 10 10 O 1.21305 * 120.00005 * 114.99716 * 9 6 5 11 11 N 1.34779 * 119.99968 * 295.00004 * 9 6 5 12 12 C 1.40586 * 120.00116 * 180.02562 * 11 9 6 13 13 C 1.40657 * 126.08252 * 359.97039 * 12 11 9 14 14 N 1.30913 * 108.38554 * 179.77427 * 13 12 11 15 15 N 1.40060 * 108.40658 * 0.38728 * 14 13 12 16 16 C 1.37327 * 126.06997 * 179.87349 * 15 14 13 17 17 H 1.07998 * 120.00582 * 185.44908 * 16 15 14 18 18 C 1.38989 * 119.99638 * 5.17669 * 16 15 14 19 19 N 1.31295 * 120.00227 * 354.31128 * 18 16 15 20 20 Si 1.86794 * 119.99993 * 174.31104 * 18 16 15 21 21 H 1.48498 * 109.47527 * 94.97968 * 20 18 16 22 22 H 1.48507 * 109.47412 * 214.98035 * 20 18 16 23 23 H 1.48504 * 109.47189 * 334.98217 * 20 18 16 24 24 C 1.35681 * 126.08287 * 179.97438 * 12 11 9 25 25 H 1.09007 * 109.46586 * 60.00424 * 1 2 3 26 26 H 1.08996 * 109.46837 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47457 * 300.00223 * 1 2 3 28 28 H 1.09001 * 109.47086 * 240.00014 * 2 1 3 29 29 H 1.08999 * 109.46916 * 120.00137 * 2 1 3 30 30 H 1.09001 * 109.47088 * 60.00015 * 3 2 1 31 31 H 1.08994 * 109.46841 * 299.99964 * 3 2 1 32 32 H 1.09001 * 109.46906 * 60.00332 * 4 3 2 33 33 H 1.08999 * 109.47435 * 300.00248 * 4 3 2 34 34 H 1.08995 * 109.47097 * 59.99984 * 5 4 3 35 35 H 1.09008 * 109.47039 * 300.00301 * 5 4 3 36 36 H 0.96700 * 114.00326 * 300.00199 * 8 6 5 37 37 H 0.97005 * 119.99650 * 359.97438 * 11 9 6 38 38 H 1.07991 * 125.80439 * 0.02562 * 13 12 11 39 39 H 0.96997 * 120.00133 * 179.97438 * 19 18 16 40 40 H 1.07998 * 126.24575 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 6 5.6101 2.8849 0.0013 7 1 5.9734 2.2958 -0.8407 8 8 6.0863 2.3150 1.2222 9 6 6.1125 4.3004 -0.1219 10 8 6.7332 4.8051 0.7899 11 7 5.8720 5.0054 -1.2451 12 6 6.3411 6.3257 -1.3602 13 6 7.0702 7.0336 -0.3877 14 7 7.3321 8.2277 -0.8560 15 7 6.7753 8.3323 -2.1369 16 6 6.8327 9.4331 -2.9560 17 1 6.2935 9.4387 -3.8917 18 6 7.5803 10.5422 -2.5782 19 7 8.1398 10.5834 -1.3911 20 14 7.7889 11.9743 -3.7592 21 1 6.7636 13.0086 -3.4692 22 1 9.1435 12.5598 -3.5929 23 1 7.6256 11.4930 -5.1546 24 6 6.1711 7.1438 -2.4292 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8892 33 1 3.9330 0.9287 0.8908 34 1 3.7164 3.3985 0.8912 35 1 3.7171 3.3991 -0.8887 36 1 5.8009 2.7890 2.0152 37 1 5.3759 4.6016 -1.9743 38 1 7.3672 6.6549 0.5790 39 1 8.6618 11.3573 -1.1276 40 1 5.6515 6.8995 -3.3439 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822879081.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:35 Heat of formation + Delta-G solvation = -55.575304 kcal Electronic energy + Delta-G solvation = -21344.421215 eV Core-core repulsion = 17966.229646 eV Total energy + Delta-G solvation = -3378.191568 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.77938 -40.60485 -38.04041 -36.55245 -35.88470 -35.02535 -33.19883 -32.24924 -30.27790 -28.89621 -26.88479 -25.56230 -22.95128 -22.53757 -22.03598 -21.67356 -21.18903 -19.42939 -18.58910 -17.43652 -17.37474 -16.87082 -16.66641 -16.21692 -15.73705 -15.56209 -15.22077 -14.95495 -14.83735 -14.34290 -14.23605 -13.95844 -13.51309 -13.31825 -13.03917 -12.93374 -12.84233 -12.74033 -12.45495 -12.08377 -11.98378 -11.85891 -11.70366 -11.68199 -11.44497 -11.29324 -11.02454 -10.82612 -10.33453 -10.11148 -8.53943 -8.48127 -6.25064 1.19492 1.39704 1.48902 1.58229 1.85124 2.03830 2.28024 2.49788 2.89673 3.07632 3.32811 3.72373 3.90170 4.01228 4.10991 4.21710 4.36307 4.43053 4.52060 4.59206 4.64077 4.79961 4.86771 4.97290 5.00149 5.06174 5.07730 5.12429 5.22063 5.28864 5.29218 5.41497 5.46085 5.52403 5.59305 5.95549 6.30107 6.53890 6.73033 6.77932 7.36455 7.46645 7.67414 8.51663 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030319 B = 0.002913 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.291281 B = 9608.405491 C =10307.842344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.108 4.108 5 C -0.140 4.140 6 C 0.113 3.887 7 H 0.145 0.855 8 O -0.550 6.550 9 C 0.464 3.536 10 O -0.578 6.578 11 N -0.610 5.610 12 C -0.046 4.046 13 C -0.062 4.062 14 N -0.312 5.312 15 N -0.168 5.168 16 C -0.354 4.354 17 H 0.142 0.858 18 C -0.008 4.008 19 N -0.826 5.826 20 Si 1.019 2.981 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.242 1.242 24 C -0.079 4.079 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.389 0.611 37 H 0.421 0.579 38 H 0.164 0.836 39 H 0.276 0.724 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.014 -17.185 -3.017 21.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.146 4.146 5 C -0.178 4.178 6 C 0.050 3.950 7 H 0.163 0.837 8 O -0.356 6.356 9 C 0.252 3.748 10 O -0.457 6.457 11 N -0.257 5.257 12 C -0.152 4.152 13 C -0.237 4.237 14 N -0.144 5.144 15 N 0.062 4.938 16 C -0.485 4.485 17 H 0.159 0.841 18 C -0.219 4.219 19 N -0.454 5.454 20 Si 0.838 3.162 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.165 1.165 24 C -0.230 4.230 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.238 0.762 37 H 0.258 0.742 38 H 0.181 0.819 39 H 0.086 0.914 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -11.632 -16.044 -2.384 19.960 hybrid contribution -0.434 0.333 -0.052 0.550 sum -12.067 -15.711 -2.436 19.959 Atomic orbital electron populations 1.21795 0.95832 1.01809 1.01780 1.21531 0.95925 0.96642 1.02165 1.21621 0.94959 0.97079 1.02117 1.21490 0.95361 0.94564 1.03139 1.22242 0.91825 0.99560 1.04149 1.21908 0.95142 0.87640 0.90260 0.83748 1.86521 1.78070 1.55093 1.15888 1.22491 0.80276 0.90302 0.81716 1.90601 1.42436 1.71800 1.40911 1.42521 1.54189 1.10150 1.18791 1.17378 1.12592 0.88239 0.97010 1.24141 1.05085 0.93153 1.01350 1.78144 1.23359 1.18548 0.94394 1.44852 1.30372 1.08847 1.09685 1.20629 1.33272 0.92036 1.02562 0.84054 1.26909 0.94372 1.02366 0.98287 1.70406 1.25835 1.29681 1.19454 0.84578 0.78058 0.75541 0.78021 1.18921 1.20318 1.16537 1.22042 1.11344 0.87762 1.01807 0.92654 0.92415 0.93016 0.91614 0.92206 0.92549 0.91592 0.90631 0.91698 0.91639 0.89124 0.76155 0.74150 0.81872 0.91421 0.79278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -1.00 16 2 C -0.13 -1.45 5.93 30.60 0.18 -1.26 16 3 C -0.12 -1.50 5.21 30.60 0.16 -1.34 16 4 C -0.11 -1.42 5.11 30.60 0.16 -1.27 16 5 C -0.14 -2.25 4.86 30.60 0.15 -2.10 16 6 C 0.11 2.44 3.38 29.85 0.10 2.54 16 7 H 0.15 2.44 8.14 -2.39 -0.02 2.42 16 8 O -0.55 -13.42 12.53 -129.99 -1.63 -15.05 16 9 C 0.46 15.31 7.14 87.66 0.63 15.93 16 10 O -0.58 -25.14 13.48 15.88 0.21 -24.93 16 11 N -0.61 -19.93 5.37 -303.92 -1.63 -21.56 16 12 C -0.05 -2.09 6.90 37.73 0.26 -1.83 16 13 C -0.06 -3.43 10.85 85.42 0.93 -2.50 16 14 N -0.31 -19.05 10.42 -56.46 -0.59 -19.64 16 15 N -0.17 -9.37 3.74 -190.01 -0.71 -10.08 16 16 C -0.35 -18.72 10.24 84.01 0.86 -17.86 16 17 H 0.14 6.43 7.84 -2.91 -0.02 6.41 16 18 C -0.01 -0.41 5.50 84.95 0.47 0.06 16 19 N -0.83 -48.11 11.83 21.66 0.26 -47.86 16 20 Si 1.02 38.58 29.55 68.60 2.03 40.61 16 21 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 22 H -0.28 -10.50 7.11 99.48 0.71 -9.80 16 23 H -0.24 -8.26 7.11 99.48 0.71 -7.55 16 24 C -0.08 -3.62 11.49 83.37 0.96 -2.66 16 25 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.96 7.82 -2.39 -0.02 0.94 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.25 7.77 -2.38 -0.02 1.23 16 36 H 0.39 8.39 8.79 -74.06 -0.65 7.74 16 37 H 0.42 9.50 8.53 -92.70 -0.79 8.71 16 38 H 0.16 9.18 5.92 -2.91 -0.02 9.16 16 39 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16 40 H 0.19 6.67 8.06 -2.91 -0.02 6.65 16 Total: -1.00 -77.32 339.22 3.11 -74.21 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -0.39 Total: 37.58 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 5.56 Total: -13.29 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -2.67 Total: -99.14 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -1.41 Total: -39.98 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -77.32 3.11 -74.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822879081.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.635 kcal (2) G-P(sol) polarization free energy of solvation -77.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds