Wall clock time and date at job start Tue Mar 31 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.35317 * 125.86956 * 2 1 4 4 C 1.35349 * 106.17446 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.75129 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47085 * 125.04878 * 5 4 3 7 7 O 1.45202 * 109.46798 * 180.02562 * 6 5 4 8 8 C 1.34229 * 117.00145 * 180.02562 * 7 6 5 9 9 O 1.20832 * 119.99925 * 359.97438 * 8 7 6 10 10 C 1.50694 * 120.00408 * 179.97438 * 8 7 6 11 11 C 1.53003 * 109.47585 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47196 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.46871 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47307 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99296 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00243 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99958 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00010 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46955 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47401 * 120.00117 * 18 16 14 21 21 H 1.48506 * 109.46958 * 239.99971 * 18 16 14 22 22 N 1.33777 * 106.49799 * 0.02562 * 4 3 2 23 23 N 1.28634 * 108.88349 * 359.97438 * 22 4 3 24 24 H 1.09000 * 109.47415 * 270.01479 * 1 2 3 25 25 H 1.09005 * 109.47124 * 30.01074 * 1 2 3 26 26 H 1.09000 * 109.47717 * 150.01396 * 1 2 3 27 27 H 1.07995 * 126.91332 * 0.02562 * 3 2 1 28 28 H 1.08999 * 109.46679 * 245.04746 * 5 4 3 29 29 H 1.09003 * 109.46810 * 5.04527 * 5 4 3 30 30 H 1.08999 * 109.47254 * 299.99515 * 6 5 4 31 31 H 1.08993 * 109.47530 * 60.00129 * 6 5 4 32 32 H 1.09006 * 109.46803 * 299.99742 * 10 8 7 33 33 H 1.09006 * 109.47164 * 59.99652 * 10 8 7 34 34 H 1.08997 * 109.46754 * 299.99887 * 11 10 8 35 35 H 1.08996 * 109.46895 * 59.99759 * 11 10 8 36 36 H 1.08997 * 109.47377 * 299.99751 * 12 11 10 37 37 H 1.09006 * 109.47158 * 60.00129 * 12 11 10 38 38 H 1.09006 * 109.47271 * 300.00030 * 13 12 11 39 39 H 1.08995 * 109.47435 * 59.99876 * 13 12 11 40 40 H 0.97005 * 120.00250 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6404 0.0006 5 6 4.7880 1.4734 0.0003 6 6 5.6706 1.0657 1.1816 7 8 6.8804 1.8687 1.1816 8 6 7.7679 1.6336 2.1608 9 8 7.5412 0.7851 2.9908 10 6 9.0471 2.4276 2.2251 11 6 9.8741 1.9662 3.4268 12 6 11.1731 2.7720 3.4916 13 6 11.9997 2.3110 4.6936 14 6 13.2789 3.1051 4.7579 15 1 13.4817 3.8631 4.0159 16 6 14.1903 2.8639 5.7640 17 7 13.9431 1.9412 6.6679 18 14 15.7756 3.8487 5.8441 19 1 15.8133 4.8183 4.7199 20 1 15.8379 4.5826 7.1336 21 1 16.9361 2.9278 5.7421 22 7 3.4575 -0.6953 0.0003 23 7 2.2191 -1.0431 0.0002 24 1 -0.3634 0.0003 1.0276 25 1 -0.3634 0.8899 -0.5140 26 1 -0.3634 -0.8901 -0.5136 27 1 1.9381 2.1281 0.0004 28 1 5.3306 1.3122 -0.9313 29 1 4.5249 2.5274 0.0899 30 1 5.1281 1.2269 2.1132 31 1 5.9337 0.0118 1.0920 32 1 9.6177 2.2720 1.3095 33 1 8.8123 3.4868 2.3313 34 1 9.3032 2.1222 4.3421 35 1 10.1089 0.9071 3.3210 36 1 11.7438 2.6156 2.5762 37 1 10.9386 3.8313 3.5971 38 1 11.4288 2.4677 5.6089 39 1 12.2341 1.2517 4.5886 40 1 14.5841 1.7717 7.3760 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851374746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:00 Heat of formation + Delta-G solvation = -15.608377 kcal Electronic energy + Delta-G solvation = -20266.757269 eV Core-core repulsion = 16890.298797 eV Total energy + Delta-G solvation = -3376.458472 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.69766 -40.35059 -36.89728 -35.42765 -34.92196 -33.50087 -32.63679 -30.31544 -29.60236 -28.31589 -26.00969 -24.33285 -22.63254 -22.47802 -21.26727 -20.48341 -19.97573 -17.74863 -17.35838 -17.10359 -16.73173 -16.16996 -16.04593 -15.37788 -14.98704 -14.46555 -14.38548 -14.11916 -13.73350 -13.50930 -13.22793 -12.67426 -12.57697 -12.21021 -12.02480 -11.88350 -11.66332 -11.61284 -11.21149 -10.99286 -10.63690 -10.55087 -10.50356 -10.46600 -10.42888 -10.29528 -9.62262 -9.61496 -9.25547 -8.97899 -8.29544 -5.94069 -3.96533 1.11648 1.86520 2.04324 2.37714 2.73109 3.34676 3.41884 3.45946 3.82088 4.03921 4.36834 4.39830 4.48017 4.50865 4.66607 4.74093 4.89110 4.97431 5.08329 5.25208 5.29628 5.33342 5.41555 5.55867 5.64563 5.73920 5.81994 6.06247 6.10561 6.24526 6.47605 6.53396 6.81092 6.99422 7.19906 7.75434 7.89966 7.90382 8.06882 8.07139 8.48862 9.11358 9.67251 11.17279 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.070095 B = 0.001900 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.363024 B =14733.409255 C =14927.707598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.295 5.295 3 C -0.043 4.043 4 C -0.019 4.019 5 C -0.029 4.029 6 C 0.071 3.929 7 O -0.363 6.363 8 C 0.460 3.540 9 O -0.504 6.504 10 C -0.111 4.111 11 C -0.109 4.109 12 C -0.110 4.110 13 C 0.019 3.981 14 C -0.520 4.520 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 N -0.260 5.260 23 N -0.083 5.083 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.194 0.806 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.016 0.984 39 H 0.017 0.983 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.287 1.300 -16.674 33.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.089 5.089 3 C -0.194 4.194 4 C -0.157 4.157 5 C -0.068 4.068 6 C -0.003 4.003 7 O -0.281 6.281 8 C 0.303 3.697 9 O -0.391 6.391 10 C -0.148 4.148 11 C -0.147 4.147 12 C -0.147 4.147 13 C -0.018 4.018 14 C -0.558 4.558 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 N -0.127 5.127 23 N -0.063 5.063 24 H 0.111 0.889 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.211 0.789 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -29.334 -0.611 -16.276 33.553 hybrid contribution 0.442 1.530 0.233 1.609 sum -28.892 0.919 -16.043 33.060 Atomic orbital electron populations 1.22300 0.72505 1.06036 1.05215 1.47280 1.09552 1.04924 1.47115 1.23405 0.90679 0.94884 1.10386 1.21710 0.94900 0.91524 1.07567 1.19704 0.89731 0.98040 0.99364 1.22860 0.83225 0.95595 0.98629 1.86456 1.30071 1.60543 1.51004 1.24188 0.85303 0.82259 0.77950 1.90686 1.76760 1.32462 1.39150 1.21602 0.89907 1.00216 1.03102 1.21580 0.96529 1.01158 0.95406 1.21646 0.93777 0.98258 1.01053 1.19111 0.93955 0.96681 0.92092 1.21320 1.03459 1.19764 1.11286 0.92622 1.25043 0.98408 0.95384 0.95768 1.69983 1.35993 1.32455 1.15019 0.86549 0.83609 0.80055 0.77846 1.19755 1.21077 1.21065 1.75115 1.09492 1.11903 1.16204 1.78359 0.96351 1.12053 1.19536 0.88892 0.88158 0.87918 0.78928 0.88714 0.88816 0.91354 0.90320 0.87838 0.87901 0.91578 0.91521 0.93180 0.93220 0.96543 0.96506 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.12 11.39 59.84 0.68 0.81 16 2 N -0.30 -2.04 3.74 -68.06 -0.25 -2.29 16 3 C -0.04 -0.27 11.54 -17.04 -0.20 -0.46 16 4 C -0.02 -0.17 6.50 -82.77 -0.54 -0.71 16 5 C -0.03 -0.23 6.17 -27.88 -0.17 -0.41 16 6 C 0.07 0.81 5.44 37.16 0.20 1.01 16 7 O -0.36 -4.57 10.22 -39.26 -0.40 -4.97 16 8 C 0.46 6.84 7.96 36.00 0.29 7.13 16 9 O -0.50 -9.25 15.73 -18.75 -0.30 -9.54 16 10 C -0.11 -1.51 5.81 -27.88 -0.16 -1.67 16 11 C -0.11 -1.93 4.50 -26.73 -0.12 -2.05 16 12 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 13 C 0.02 0.49 4.97 -27.88 -0.14 0.36 16 14 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 18 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 N -0.26 -3.23 12.40 33.29 0.41 -2.82 16 23 N -0.08 -0.92 13.16 60.35 0.79 -0.13 16 24 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 25 H 0.10 -0.12 8.14 -51.93 -0.42 -0.54 16 26 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 27 H 0.19 0.37 8.06 -52.49 -0.42 -0.05 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 30 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 31 H 0.08 1.02 8.13 -51.93 -0.42 0.60 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 349.54 15.07 5.27 5.27 Total: -1.00 -37.26 349.54 -5.77 -43.03 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: -6.30 Total: -6.44 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -0.71 Total: -12.19 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 1.69 Total: -32.08 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.70 Total: -14.52 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.26 -5.77 -43.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851374746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.417 kcal (2) G-P(sol) polarization free energy of solvation -37.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds