Wall clock time and date at job start Tue Mar 31 2020 05:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47245 * 2 1 4 4 C 1.53005 * 109.47335 * 180.02562 * 3 2 1 5 5 O 1.45196 * 109.47281 * 180.02562 * 4 3 2 6 6 C 1.34229 * 117.00181 * 180.02562 * 5 4 3 7 7 O 1.20833 * 119.99690 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00268 * 179.97438 * 6 5 4 9 9 H 1.09004 * 109.47075 * 300.00008 * 8 6 5 10 10 C 1.52999 * 109.46779 * 59.99888 * 8 6 5 11 11 N 1.46495 * 109.47284 * 179.97438 * 8 6 5 12 12 C 1.35313 * 125.86749 * 325.00292 * 11 8 6 13 13 C 1.35355 * 106.17637 * 179.97438 * 12 11 8 14 14 C 1.50694 * 126.75481 * 179.73261 * 13 12 11 15 15 C 1.50705 * 109.47243 * 125.00249 * 14 13 12 16 16 H 1.07999 * 119.99383 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00267 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99882 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99962 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46844 * 90.00610 * 19 17 15 21 21 H 1.48500 * 109.47077 * 210.00260 * 19 17 15 22 22 H 1.48502 * 109.47177 * 330.00211 * 19 17 15 23 23 N 1.33770 * 106.49598 * 0.02562 * 13 12 11 24 24 N 1.28636 * 108.88653 * 359.97438 * 23 13 12 25 25 H 1.08999 * 109.47070 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99878 * 1 2 3 27 27 H 1.08993 * 109.47019 * 59.99984 * 1 2 3 28 28 H 1.09004 * 109.46926 * 240.00122 * 2 1 3 29 29 H 1.09003 * 109.47543 * 120.00179 * 2 1 3 30 30 H 1.09004 * 109.47059 * 60.00204 * 3 2 1 31 31 H 1.08998 * 109.47690 * 300.00375 * 3 2 1 32 32 H 1.09004 * 109.46945 * 60.00055 * 4 3 2 33 33 H 1.09003 * 109.46913 * 300.00229 * 4 3 2 34 34 H 1.09003 * 109.46787 * 180.02562 * 10 8 6 35 35 H 1.08997 * 109.47304 * 299.99847 * 10 8 6 36 36 H 1.09004 * 109.47219 * 60.00208 * 10 8 6 37 37 H 1.07998 * 126.91441 * 0.02562 * 12 11 8 38 38 H 1.08990 * 109.47690 * 245.00694 * 14 13 12 39 39 H 1.09005 * 109.46952 * 5.00711 * 14 13 12 40 40 H 0.96993 * 119.99746 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0540 2.8114 0.0000 6 6 5.3847 2.9873 -0.0010 7 8 6.1208 2.0290 -0.0019 8 6 5.9608 4.3799 -0.0011 9 1 5.6241 4.9123 -0.8906 10 6 5.4902 5.1264 1.2488 11 7 7.4237 4.3032 -0.0016 12 6 8.1687 3.3646 0.6269 13 6 9.4608 3.6707 0.3644 14 6 10.6795 2.9266 0.8460 15 6 11.5304 2.5382 -0.3356 16 1 11.2199 2.8040 -1.3353 17 6 12.7053 1.8436 -0.1405 18 7 13.4481 1.5051 -1.1717 19 14 13.2427 1.3845 1.5886 20 1 12.6875 0.0534 1.9424 21 1 14.7256 1.3342 1.6491 22 1 12.7423 2.4008 2.5488 23 7 9.4433 4.7675 -0.4013 24 7 8.2214 5.1170 -0.6002 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9330 0.9288 -0.8909 33 1 3.9337 0.9285 0.8891 34 1 5.9064 6.1338 1.2485 35 1 4.4017 5.1835 1.2496 36 1 5.8268 4.5940 2.1384 37 1 7.8054 2.5371 1.2183 38 1 11.2557 3.5668 1.5139 39 1 10.3693 2.0290 1.3810 40 1 14.2748 1.0167 -1.0344 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881294690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:33 Heat of formation + Delta-G solvation = 3.896300 kcal Electronic energy + Delta-G solvation = -21574.480537 eV Core-core repulsion = 18198.867851 eV Total energy + Delta-G solvation = -3375.612686 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.75539 -40.84412 -37.42854 -35.49366 -35.38377 -33.28334 -31.40308 -30.81335 -29.86277 -27.98889 -25.79244 -24.19332 -23.10769 -22.29899 -21.68161 -20.80621 -20.03860 -17.85854 -17.42209 -17.20978 -16.63840 -16.12081 -15.86952 -15.41264 -14.48125 -14.41883 -14.15246 -14.06214 -13.79384 -13.17014 -13.01933 -12.86788 -12.58564 -12.33389 -12.26050 -12.17150 -11.94829 -11.78893 -11.58329 -11.28196 -11.16672 -10.88210 -10.68002 -10.60841 -10.56562 -10.06998 -9.86313 -9.48123 -9.26696 -8.48288 -8.19497 -5.94445 -3.91930 1.70078 1.70786 2.24764 2.69424 3.35919 3.41471 3.43837 3.46747 3.93635 4.32823 4.36857 4.39559 4.44946 4.51381 4.61432 4.76942 4.94424 5.00292 5.04410 5.16330 5.24542 5.27346 5.29042 5.38311 5.39720 5.57531 5.63111 5.70036 5.76143 5.78836 5.94073 6.04538 6.17074 6.89618 7.01633 7.13940 7.25685 7.29361 7.78467 8.63492 9.13159 9.21606 9.64713 11.19229 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.003441 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.769052 B = 8135.060991 C = 8990.723468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.119 4.119 4 C 0.065 3.935 5 O -0.350 6.350 6 C 0.454 3.546 7 O -0.475 6.475 8 C 0.163 3.837 9 H 0.146 0.854 10 C -0.158 4.158 11 N -0.306 5.306 12 C -0.045 4.045 13 C 0.032 3.968 14 C 0.060 3.940 15 C -0.504 4.504 16 H 0.076 0.924 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.264 1.264 23 N -0.243 5.243 24 N -0.106 5.106 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.185 0.815 38 H 0.038 0.962 39 H 0.031 0.969 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.237 1.039 6.376 28.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.156 4.156 4 C -0.009 4.009 5 O -0.266 6.266 6 C 0.293 3.707 7 O -0.359 6.359 8 C 0.058 3.942 9 H 0.164 0.836 10 C -0.216 4.216 11 N -0.102 5.102 12 C -0.193 4.193 13 C -0.105 4.105 14 C 0.022 3.978 15 C -0.543 4.543 16 H 0.094 0.906 17 C -0.134 4.134 18 N -0.541 5.541 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.189 1.189 23 N -0.111 5.111 24 N -0.084 5.084 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.202 0.798 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.775 1.868 5.439 28.365 hybrid contribution 0.189 -1.572 1.312 2.056 sum -27.587 0.296 6.751 28.403 Atomic orbital electron populations 1.21744 0.95022 1.02012 1.02086 1.21447 0.96498 0.95386 1.02796 1.21623 0.91974 0.98125 1.03926 1.23239 0.95028 0.79293 1.03299 1.86417 1.22995 1.33186 1.84000 1.23252 0.81590 0.91974 0.73839 1.90830 1.59820 1.42260 1.43029 1.20666 0.76672 0.91806 1.05075 0.83622 1.22178 1.03232 1.01543 0.94644 1.46815 1.06020 1.21270 1.36111 1.23411 0.91500 0.98410 1.06027 1.22465 0.95188 0.94640 0.98175 1.18141 0.88673 0.93503 0.97532 1.20920 1.04856 1.35055 0.93436 0.90609 1.24973 0.96188 0.95494 0.96740 1.69908 1.14261 1.40026 1.29891 0.86824 0.77902 0.79264 0.85619 1.20247 1.21258 1.18872 1.75050 1.08721 1.13257 1.14090 1.78284 0.95546 1.16686 1.17846 0.92372 0.92522 0.92496 0.91450 0.91471 0.90596 0.90590 0.90732 0.90732 0.89450 0.88730 0.90911 0.79837 0.94421 0.95118 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.30 16 2 C -0.12 -0.63 5.93 -26.74 -0.16 -0.79 16 3 C -0.12 -0.68 5.59 -26.73 -0.15 -0.83 16 4 C 0.06 0.53 5.47 37.16 0.20 0.73 16 5 O -0.35 -3.32 10.12 -39.25 -0.40 -3.72 16 6 C 0.45 5.50 7.20 36.01 0.26 5.76 16 7 O -0.47 -7.55 13.46 -18.76 -0.25 -7.80 16 8 C 0.16 1.87 3.76 -69.08 -0.26 1.61 16 9 H 0.15 1.34 8.14 -51.93 -0.42 0.92 16 10 C -0.16 -1.28 9.45 37.16 0.35 -0.93 16 11 N -0.31 -5.29 3.21 -55.89 -0.18 -5.46 16 12 C -0.05 -0.88 9.69 -17.05 -0.17 -1.05 16 13 C 0.03 0.75 6.44 -82.78 -0.53 0.21 16 14 C 0.06 1.54 4.62 -29.04 -0.13 1.41 16 15 C -0.50 -15.27 9.64 -34.44 -0.33 -15.61 16 16 H 0.08 2.56 7.98 -52.49 -0.42 2.14 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 18 N -0.90 -28.81 13.96 55.43 0.77 -28.04 16 19 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 23 N -0.24 -5.93 12.40 33.29 0.41 -5.52 16 24 N -0.11 -2.18 13.17 60.35 0.79 -1.38 16 25 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 33 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.51 8.11 -51.93 -0.42 0.08 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.18 3.21 6.78 -52.49 -0.36 2.86 16 38 H 0.04 0.95 7.20 -51.93 -0.37 0.58 16 39 H 0.03 0.73 7.55 -51.93 -0.39 0.34 16 40 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 341.35 15.07 5.14 5.14 Total: -1.00 -36.53 341.35 -5.22 -41.76 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -6.20 Total: -4.38 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.65 Total: -7.87 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 1.80 Total: -40.40 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -0.65 Total: -11.52 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.53 -5.22 -41.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881294690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.654 kcal (2) G-P(sol) polarization free energy of solvation -36.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds