Wall clock time and date at job start Tue Mar 31 2020 05:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47277 * 2 1 4 4 C 1.52992 * 109.47442 * 239.99382 * 2 1 3 5 5 C 1.50706 * 109.46926 * 119.99239 * 2 1 3 6 6 N 1.30069 * 126.20997 * 60.02645 * 5 2 1 7 7 N 1.28658 * 109.53924 * 179.70845 * 6 5 2 8 8 C 1.31066 * 109.32406 * 0.44494 * 7 6 5 9 9 N 1.38247 * 126.37362 * 179.82802 * 8 7 6 10 10 C 1.48726 * 111.01170 * 244.17955 * 9 8 7 11 11 C 1.54379 * 104.51383 * 158.96863 * 10 9 8 12 12 C 1.54259 * 105.15212 * 336.26802 * 11 10 9 13 13 O 1.42900 * 110.32303 * 118.84560 * 12 11 10 14 14 C 1.50698 * 110.32651 * 240.95415 * 12 11 10 15 15 H 1.07999 * 119.99847 * 354.83508 * 14 12 11 16 16 C 1.37874 * 120.00465 * 174.83958 * 14 12 11 17 17 N 1.31520 * 119.99820 * 4.95490 * 16 14 12 18 18 Si 1.86798 * 120.00528 * 184.96409 * 16 14 12 19 19 H 1.48500 * 109.47285 * 94.99037 * 18 16 14 20 20 H 1.48496 * 109.47565 * 214.99611 * 18 16 14 21 21 H 1.48505 * 109.46969 * 334.99615 * 18 16 14 22 22 C 1.48555 * 111.00058 * 359.68714 * 9 8 7 23 23 O 1.34586 * 107.25137 * 359.56497 * 8 7 6 24 24 H 1.09003 * 109.47523 * 300.00748 * 1 2 3 25 25 H 1.09002 * 109.46815 * 60.00721 * 1 2 3 26 26 H 1.08998 * 109.47458 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47410 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46609 * 299.99405 * 3 2 1 29 29 H 1.09003 * 109.47455 * 59.99210 * 3 2 1 30 30 H 1.08997 * 109.47521 * 300.00403 * 4 2 1 31 31 H 1.09002 * 109.47199 * 60.00133 * 4 2 1 32 32 H 1.08999 * 109.47569 * 180.02562 * 4 2 1 33 33 H 1.08997 * 110.38830 * 40.24881 * 10 9 8 34 34 H 1.09004 * 110.50742 * 277.74804 * 10 9 8 35 35 H 1.08998 * 110.32465 * 217.31805 * 11 10 9 36 36 H 1.09006 * 110.32752 * 95.21503 * 11 10 9 37 37 H 0.96705 * 113.99773 * 180.02562 * 13 12 11 38 38 H 0.96992 * 120.00188 * 180.02562 * 17 16 14 39 39 H 1.09000 * 110.41083 * 82.18790 * 22 9 8 40 40 H 1.09000 * 110.41336 * 319.74093 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2306 6 7 1.7941 -1.9471 1.5550 7 7 2.3838 -2.2222 2.6649 8 6 3.0163 -1.1580 3.0953 9 7 3.7615 -1.0604 4.2556 10 6 3.1494 -0.0905 5.2025 11 6 3.7275 -0.4778 6.5806 12 6 4.1308 -1.9606 6.4464 13 8 5.5356 -2.1141 6.6584 14 6 3.3590 -2.8040 7.4283 15 1 2.7066 -2.3330 8.1487 16 6 3.4857 -4.1767 7.4070 17 7 4.3521 -4.7446 6.5967 18 14 2.4266 -5.2300 8.5287 19 1 1.2218 -5.6844 7.7890 20 1 3.2056 -6.4113 8.9793 21 1 2.0105 -4.4317 9.7098 22 6 3.7616 -2.3472 4.9980 23 8 2.8101 -0.1795 2.1945 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8901 29 1 1.6766 1.9565 0.8899 30 1 1.6767 -1.7490 -1.2491 31 1 1.6768 -0.2076 -2.1392 32 1 3.1301 -0.7217 -1.2489 33 1 2.0643 -0.1933 5.2029 34 1 3.4356 0.9289 4.9431 35 1 2.9701 -0.3601 7.3555 36 1 4.6009 0.1328 6.8100 37 1 5.8469 -3.0268 6.5858 38 1 4.4410 -5.7104 6.5815 39 1 4.5079 -3.0250 4.5836 40 1 2.7726 -2.8042 4.9668 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882515912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:14 Heat of formation + Delta-G solvation = -7.277890 kcal Electronic energy + Delta-G solvation = -22913.816212 eV Core-core repulsion = 19537.718977 eV Total energy + Delta-G solvation = -3376.097235 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.75496 -38.78723 -37.16158 -35.75110 -34.94059 -32.21449 -31.15212 -28.55552 -27.80078 -27.53187 -27.52708 -25.01924 -23.65428 -22.83863 -20.96065 -20.08491 -19.39519 -17.59813 -17.03314 -16.77867 -15.95812 -15.46673 -14.97354 -14.82403 -14.27508 -14.11222 -14.03048 -13.36438 -12.75830 -12.59828 -12.52913 -12.17542 -12.11950 -11.94766 -11.91265 -11.80765 -11.53001 -11.41654 -11.32049 -11.20391 -11.08564 -11.02584 -10.64808 -10.57324 -10.48879 -10.23938 -9.62950 -9.32617 -8.68927 -8.31053 -8.08994 -6.31016 -4.39614 1.52990 2.28777 2.77253 3.21124 3.29109 3.31121 3.82613 4.25604 4.37648 4.61978 4.68062 4.91164 4.96749 5.05173 5.30736 5.37170 5.42804 5.47118 5.52422 5.56331 5.59507 5.61913 5.66619 5.71981 5.80875 5.94902 6.02362 6.03599 6.11340 6.14332 6.43247 6.65028 6.71007 6.86376 7.13506 7.29141 7.39692 7.71123 8.00536 8.63740 8.77107 9.29073 9.43544 10.76946 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026466 B = 0.004533 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.698936 B = 6175.409524 C = 6627.081966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.040 3.960 3 C -0.146 4.146 4 C -0.140 4.140 5 C 0.139 3.861 6 N -0.271 5.271 7 N -0.317 5.317 8 C 0.351 3.649 9 N -0.424 5.424 10 C 0.045 3.955 11 C -0.109 4.109 12 C 0.254 3.746 13 O -0.583 6.583 14 C -0.544 4.544 15 H 0.067 0.933 16 C 0.073 3.927 17 N -0.891 5.891 18 Si 0.902 3.098 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.272 1.272 22 C 0.051 3.949 23 O -0.230 6.230 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.383 0.617 38 H 0.271 0.729 39 H 0.092 0.908 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 10.376 -11.812 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.038 3.962 3 C -0.204 4.204 4 C -0.198 4.198 5 C -0.074 4.074 6 N -0.117 5.117 7 N -0.170 5.170 8 C 0.051 3.949 9 N -0.152 5.152 10 C -0.080 4.080 11 C -0.147 4.147 12 C 0.213 3.787 13 O -0.392 6.392 14 C -0.582 4.582 15 H 0.085 0.915 16 C -0.131 4.131 17 N -0.530 5.530 18 Si 0.730 3.270 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.074 4.074 23 O -0.109 6.109 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.233 0.767 38 H 0.081 0.919 39 H 0.110 0.890 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.179 9.795 -11.961 16.305 hybrid contribution -0.593 -0.377 0.657 0.962 sum -5.773 9.418 -11.305 15.806 Atomic orbital electron populations 1.21914 0.91646 1.03591 1.02589 1.19062 0.96326 0.94497 0.86332 1.21920 1.02023 0.93585 1.02883 1.21918 1.01655 1.01291 0.94930 1.27492 0.95038 0.91192 0.93708 1.74069 1.18107 1.11760 1.07749 1.75048 1.11709 1.23423 1.06828 1.25896 0.93034 0.82395 0.93529 1.62317 1.39144 1.14038 0.99738 1.23249 0.97283 0.95205 0.92291 1.22369 1.00540 0.98136 0.93659 1.19254 0.80636 0.89891 0.88872 1.86150 1.24490 1.34212 1.94365 1.21662 1.27127 0.91468 1.17923 0.91478 1.25066 0.94787 0.98071 0.95188 1.69647 1.34146 1.11615 1.37572 0.86401 0.80280 0.79730 0.80628 1.20370 1.20906 1.19659 1.24202 1.03405 0.84969 0.94775 1.84758 1.56152 1.41059 1.28926 0.92170 0.90885 0.91038 0.91761 0.90996 0.91816 0.91042 0.90883 0.92132 0.92931 0.89929 0.90242 0.90863 0.76653 0.91877 0.88980 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.46 37.16 0.31 -1.01 16 2 C 0.04 0.44 0.99 -155.66 -0.15 0.29 16 3 C -0.15 -1.35 8.05 37.16 0.30 -1.06 16 4 C -0.14 -1.35 8.46 37.15 0.31 -1.04 16 5 C 0.14 2.28 6.57 -13.02 -0.09 2.19 16 6 N -0.27 -5.27 12.20 32.59 0.40 -4.88 16 7 N -0.32 -7.03 10.99 29.86 0.33 -6.71 16 8 C 0.35 7.34 7.45 -86.90 -0.65 6.69 16 9 N -0.42 -9.07 5.46 -170.67 -0.93 -10.00 16 10 C 0.05 0.85 6.45 -2.09 -0.01 0.83 16 11 C -0.11 -2.22 6.44 -25.35 -0.16 -2.39 16 12 C 0.25 6.19 1.06 -90.39 -0.10 6.09 16 13 O -0.58 -14.92 12.95 -35.23 -0.46 -15.38 16 14 C -0.54 -14.16 8.13 -34.44 -0.28 -14.44 16 15 H 0.07 1.72 7.38 -52.49 -0.39 1.33 16 16 C 0.07 1.89 5.22 -17.82 -0.09 1.80 16 17 N -0.89 -23.59 10.83 55.43 0.60 -22.99 16 18 Si 0.90 20.47 29.54 -169.99 -5.02 15.44 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 C 0.05 1.22 4.38 -2.18 -0.01 1.21 16 23 O -0.23 -4.20 10.35 3.71 0.04 -4.16 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.95 7.97 -51.93 -0.41 0.54 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.52 7.43 -51.93 -0.39 1.14 16 36 H 0.07 1.44 7.98 -51.93 -0.41 1.02 16 37 H 0.38 9.95 7.29 45.56 0.33 10.28 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.09 2.40 7.89 -51.93 -0.41 1.99 16 40 H 0.07 1.90 7.14 -51.93 -0.37 1.53 16 LS Contribution 328.11 15.07 4.94 4.94 Total: -1.00 -29.17 328.11 -6.13 -35.30 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.41 Total: 9.26 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -0.61 Total: -0.83 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.40 Total: -44.58 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.42 Total: -19.54 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.17 -6.13 -35.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882515912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.018 kcal (2) G-P(sol) polarization free energy of solvation -29.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds