Wall clock time and date at job start Tue Mar 31 2020 05:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47277 * 2 1 4 4 C 1.52992 * 109.47442 * 239.99382 * 2 1 3 5 5 C 1.50706 * 109.46926 * 119.99239 * 2 1 3 6 6 N 1.30069 * 126.20997 * 60.02645 * 5 2 1 7 7 N 1.28658 * 109.53924 * 179.70845 * 6 5 2 8 8 C 1.31066 * 109.32406 * 0.44494 * 7 6 5 9 9 N 1.38247 * 126.37362 * 179.82802 * 8 7 6 10 10 C 1.48726 * 111.01170 * 244.17955 * 9 8 7 11 11 C 1.54379 * 104.51383 * 158.96863 * 10 9 8 12 12 C 1.54259 * 105.15212 * 336.26802 * 11 10 9 13 13 O 1.42900 * 110.32303 * 118.84560 * 12 11 10 14 14 C 1.50698 * 110.32651 * 240.95415 * 12 11 10 15 15 H 1.07999 * 119.99847 * 354.83508 * 14 12 11 16 16 C 1.37874 * 120.00465 * 174.83958 * 14 12 11 17 17 N 1.31520 * 119.99820 * 4.95490 * 16 14 12 18 18 Si 1.86798 * 120.00528 * 184.96409 * 16 14 12 19 19 H 1.48500 * 109.47285 * 94.99037 * 18 16 14 20 20 H 1.48496 * 109.47565 * 214.99611 * 18 16 14 21 21 H 1.48505 * 109.46969 * 334.99615 * 18 16 14 22 22 C 1.48555 * 111.00058 * 359.68714 * 9 8 7 23 23 O 1.34586 * 107.25137 * 359.56497 * 8 7 6 24 24 H 1.09003 * 109.47523 * 300.00748 * 1 2 3 25 25 H 1.09002 * 109.46815 * 60.00721 * 1 2 3 26 26 H 1.08998 * 109.47458 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47410 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46609 * 299.99405 * 3 2 1 29 29 H 1.09003 * 109.47455 * 59.99210 * 3 2 1 30 30 H 1.08997 * 109.47521 * 300.00403 * 4 2 1 31 31 H 1.09002 * 109.47199 * 60.00133 * 4 2 1 32 32 H 1.08999 * 109.47569 * 180.02562 * 4 2 1 33 33 H 1.08997 * 110.38830 * 40.24881 * 10 9 8 34 34 H 1.09004 * 110.50742 * 277.74804 * 10 9 8 35 35 H 1.08998 * 110.32465 * 217.31805 * 11 10 9 36 36 H 1.09006 * 110.32752 * 95.21503 * 11 10 9 37 37 H 0.96705 * 113.99773 * 180.02562 * 13 12 11 38 38 H 0.96992 * 120.00188 * 180.02562 * 17 16 14 39 39 H 1.09000 * 110.41083 * 82.18790 * 22 9 8 40 40 H 1.09000 * 110.41336 * 319.74093 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2306 6 7 1.7941 -1.9471 1.5550 7 7 2.3838 -2.2222 2.6649 8 6 3.0163 -1.1580 3.0953 9 7 3.7615 -1.0604 4.2556 10 6 3.1494 -0.0905 5.2025 11 6 3.7275 -0.4778 6.5806 12 6 4.1308 -1.9606 6.4464 13 8 5.5356 -2.1141 6.6584 14 6 3.3590 -2.8040 7.4283 15 1 2.7066 -2.3330 8.1487 16 6 3.4857 -4.1767 7.4070 17 7 4.3521 -4.7446 6.5967 18 14 2.4266 -5.2300 8.5287 19 1 1.2218 -5.6844 7.7890 20 1 3.2056 -6.4113 8.9793 21 1 2.0105 -4.4317 9.7098 22 6 3.7616 -2.3472 4.9980 23 8 2.8101 -0.1795 2.1945 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8901 29 1 1.6766 1.9565 0.8899 30 1 1.6767 -1.7490 -1.2491 31 1 1.6768 -0.2076 -2.1392 32 1 3.1301 -0.7217 -1.2489 33 1 2.0643 -0.1933 5.2029 34 1 3.4356 0.9289 4.9431 35 1 2.9701 -0.3601 7.3555 36 1 4.6009 0.1328 6.8100 37 1 5.8469 -3.0268 6.5858 38 1 4.4410 -5.7104 6.5815 39 1 4.5079 -3.0250 4.5836 40 1 2.7726 -2.8042 4.9668 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882515912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:13 Heat of formation + Delta-G solvation = -32.011653 kcal Electronic energy + Delta-G solvation = -22914.888749 eV Core-core repulsion = 19537.718977 eV Total energy + Delta-G solvation = -3377.169772 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.25250 -40.50767 -38.12286 -37.26369 -36.77045 -34.22675 -32.79330 -30.10109 -29.59091 -28.32368 -28.28258 -26.92430 -25.01066 -24.45962 -22.58674 -21.41190 -20.97203 -19.40115 -18.54407 -18.45191 -17.39681 -17.02866 -16.63501 -16.45997 -15.84131 -15.23870 -14.98356 -14.92910 -14.59925 -13.95804 -13.64686 -13.57150 -13.42277 -13.22785 -13.16468 -13.07179 -12.92344 -12.81452 -12.71423 -12.68188 -12.42396 -12.31080 -12.23148 -12.14465 -12.11977 -11.82819 -11.25560 -11.11358 -10.67113 -10.30032 -9.72320 -8.29104 -6.44565 0.06989 0.81169 1.26656 1.40118 1.42855 1.51985 2.35239 2.49982 2.98201 3.20610 3.37949 3.63710 3.81000 3.81622 3.91642 3.96244 4.10611 4.13449 4.24288 4.49369 4.54008 4.63123 4.69248 4.70065 4.77846 4.89168 4.89945 4.90226 4.98197 4.98852 5.12508 5.18675 5.27602 5.28638 5.33045 5.42691 5.62949 5.72263 6.04349 6.63115 7.25300 7.27080 7.38892 8.77543 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026466 B = 0.004533 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.698936 B = 6175.409524 C = 6627.081966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.034 3.966 3 C -0.143 4.143 4 C -0.138 4.138 5 C 0.165 3.835 6 N -0.305 5.305 7 N -0.352 5.352 8 C 0.338 3.662 9 N -0.429 5.429 10 C 0.049 3.951 11 C -0.104 4.104 12 C 0.238 3.762 13 O -0.589 6.589 14 C -0.563 4.563 15 H 0.068 0.932 16 C 0.030 3.970 17 N -0.911 5.911 18 Si 0.960 3.040 19 H -0.281 1.281 20 H -0.280 1.280 21 H -0.264 1.264 22 C 0.073 3.927 23 O -0.226 6.226 24 H 0.055 0.945 25 H 0.111 0.889 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.108 0.892 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.112 0.888 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.376 0.624 38 H 0.271 0.729 39 H 0.061 0.939 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.535 12.471 -12.994 19.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.032 3.968 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.049 4.049 6 N -0.149 5.149 7 N -0.204 5.204 8 C 0.037 3.963 9 N -0.157 5.157 10 C -0.075 4.075 11 C -0.142 4.142 12 C 0.198 3.802 13 O -0.398 6.398 14 C -0.601 4.601 15 H 0.087 0.913 16 C -0.172 4.172 17 N -0.550 5.550 18 Si 0.786 3.214 19 H -0.207 1.207 20 H -0.205 1.205 21 H -0.188 1.188 22 C -0.052 4.052 23 O -0.105 6.105 24 H 0.074 0.926 25 H 0.130 0.870 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.127 0.873 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.131 0.869 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.226 0.774 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.406 11.901 -13.153 18.859 hybrid contribution -0.250 -0.976 0.893 1.346 sum -6.656 10.925 -12.260 17.719 Atomic orbital electron populations 1.21949 0.89973 1.03215 1.04306 1.19625 0.97516 0.95436 0.84199 1.21951 1.01536 0.92068 1.04534 1.21957 1.01205 1.00868 0.95542 1.28881 0.91998 0.90489 0.93559 1.74015 1.19607 1.13601 1.07641 1.74978 1.12646 1.24631 1.08162 1.25721 0.93745 0.82941 0.93859 1.62282 1.40145 1.13047 1.00227 1.23367 0.97378 0.96130 0.90671 1.22348 1.01285 0.95397 0.95142 1.19508 0.79779 0.92400 0.88541 1.86141 1.25458 1.33714 1.94442 1.21968 1.27505 0.92167 1.18440 0.91347 1.25777 0.95748 0.99200 0.96435 1.69746 1.35047 1.11717 1.38520 0.85498 0.78545 0.78273 0.79104 1.20682 1.20533 1.18832 1.23671 1.00700 0.85752 0.95123 1.84782 1.56455 1.40339 1.28877 0.92629 0.86998 0.92497 0.92580 0.87344 0.92227 0.92479 0.86940 0.92922 0.92518 0.86481 0.89071 0.89966 0.77390 0.91921 0.92008 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.46 71.98 0.61 -1.59 16 2 C 0.03 0.68 0.99 -52.93 -0.05 0.62 16 3 C -0.14 -2.15 8.05 71.98 0.58 -1.57 16 4 C -0.14 -2.30 8.46 71.98 0.61 -1.69 16 5 C 0.16 5.25 6.57 88.37 0.58 5.83 16 6 N -0.30 -12.02 12.20 -165.26 -2.02 -14.04 16 7 N -0.35 -16.06 10.99 -173.51 -1.91 -17.97 16 8 C 0.34 14.29 7.45 179.05 1.33 15.63 16 9 N -0.43 -18.48 5.46 -804.10 -4.39 -22.87 16 10 C 0.05 1.78 6.45 86.42 0.56 2.34 16 11 C -0.10 -4.13 6.44 31.49 0.20 -3.93 16 12 C 0.24 11.76 1.06 -10.64 -0.01 11.75 16 13 O -0.59 -30.76 12.95 -148.98 -1.93 -32.69 16 14 C -0.56 -29.64 8.13 25.60 0.21 -29.43 16 15 H 0.07 3.49 7.38 -2.91 -0.02 3.47 16 16 C 0.03 1.58 5.22 84.65 0.44 2.02 16 17 N -0.91 -49.60 10.83 21.45 0.23 -49.36 16 18 Si 0.96 42.30 29.54 68.60 2.03 44.33 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 22 C 0.07 3.63 4.38 86.45 0.38 4.01 16 23 O -0.23 -8.06 10.35 -9.64 -0.10 -8.16 16 24 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.99 7.97 -2.39 -0.02 1.97 16 34 H 0.12 3.42 8.14 -2.38 -0.02 3.40 16 35 H 0.09 3.38 7.43 -2.39 -0.02 3.36 16 36 H 0.08 3.10 7.98 -2.38 -0.02 3.08 16 37 H 0.38 20.28 7.29 -74.05 -0.54 19.75 16 38 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 39 H 0.06 3.39 7.89 -2.39 -0.02 3.37 16 40 H 0.05 2.55 7.14 -2.39 -0.02 2.53 16 Total: -1.00 -65.20 328.11 -2.14 -67.34 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.50 Total: 29.45 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 5.44 Total: 3.98 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -8.08 Total: -104.24 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -2.03 Total: -40.85 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -65.20 -2.14 -67.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882515912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.327 kcal (2) G-P(sol) polarization free energy of solvation -65.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds