Wall clock time and date at job start Tue Mar 31 2020 06:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35989 * 117.00075 * 2 1 4 4 C 1.40139 * 125.83625 * 179.97438 * 3 2 1 5 5 C 1.36077 * 107.82252 * 179.97438 * 4 3 2 6 6 N 1.39451 * 126.22030 * 179.97438 * 5 4 3 7 7 C 1.34775 * 120.00307 * 0.02562 * 6 5 4 8 8 O 1.21296 * 119.99432 * 0.02562 * 7 6 5 9 9 C 1.50693 * 120.00187 * 180.02562 * 7 6 5 10 10 C 1.53007 * 109.47076 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46864 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46513 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46731 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00207 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00020 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99441 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99914 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47338 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46785 * 120.00477 * 17 15 13 20 20 H 1.48496 * 109.47013 * 239.99885 * 17 15 13 21 21 N 1.35820 * 107.56109 * 0.02562 * 5 4 3 22 22 C 1.46496 * 126.04758 * 180.02562 * 21 5 4 23 23 N 1.31114 * 125.83576 * 359.97438 * 3 2 1 24 24 H 1.09007 * 109.47059 * 59.99627 * 1 2 3 25 25 H 1.08992 * 109.47158 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47000 * 299.99988 * 1 2 3 27 27 H 1.07998 * 126.09075 * 359.94463 * 4 3 2 28 28 H 0.97005 * 119.99817 * 180.02562 * 6 5 4 29 29 H 1.09007 * 109.47320 * 299.99825 * 9 7 6 30 30 H 1.08997 * 109.47227 * 60.00110 * 9 7 6 31 31 H 1.08996 * 109.46869 * 299.99628 * 10 9 7 32 32 H 1.08997 * 109.47447 * 59.99701 * 10 9 7 33 33 H 1.08996 * 109.47038 * 299.99480 * 11 10 9 34 34 H 1.08992 * 109.47449 * 60.00093 * 11 10 9 35 35 H 1.09004 * 109.46885 * 299.99199 * 12 11 10 36 36 H 1.08997 * 109.47625 * 59.99762 * 12 11 10 37 37 H 0.97008 * 119.99512 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.46910 * 269.98131 * 22 21 5 39 39 H 1.09001 * 109.47047 * 29.97769 * 22 21 5 40 40 H 1.09001 * 109.47468 * 149.97535 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4312 1.4269 0.0005 5 6 3.6437 2.7710 -0.0003 6 7 4.8837 3.4091 0.0004 7 6 6.0170 2.6798 0.0014 8 8 5.9584 1.4682 0.0013 9 6 7.3569 3.3694 0.0027 10 6 8.4705 2.3201 0.0031 11 6 9.8309 3.0204 0.0051 12 6 10.9445 1.9711 0.0048 13 6 12.2844 2.6607 0.0061 14 1 12.3366 3.7395 0.0066 15 6 13.4439 1.9145 0.0066 16 7 13.3803 0.6009 0.0054 17 14 15.1048 2.7694 0.0075 18 1 14.9042 4.2408 0.0081 19 1 15.8646 2.3733 1.2203 20 1 15.8658 2.3736 -1.2046 21 7 2.4288 3.3780 -0.0006 22 6 2.1870 4.8229 -0.0020 23 7 1.4478 2.3782 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.1939 0.6623 0.0018 28 1 4.9305 4.3780 0.0001 29 1 7.4457 3.9926 -0.8872 30 1 7.4440 3.9924 0.8928 31 1 8.3820 1.6967 0.8927 32 1 8.3833 1.6973 -0.8872 33 1 9.9197 3.6441 -0.8843 34 1 9.9179 3.6428 0.8956 35 1 10.8558 1.3470 0.8941 36 1 10.8573 1.3489 -0.8859 37 1 14.1960 0.0759 0.0054 38 1 2.1269 5.1822 1.0253 39 1 3.0049 5.3276 -0.5161 40 1 1.2494 5.0340 -0.5163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882944915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:31 Heat of formation + Delta-G solvation = -3.265254 kcal Electronic energy + Delta-G solvation = -20976.483180 eV Core-core repulsion = 17600.559946 eV Total energy + Delta-G solvation = -3375.923234 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.75107 -39.85270 -38.34188 -35.19961 -34.85494 -32.98435 -32.68532 -30.30215 -28.94184 -28.04270 -26.13018 -25.76296 -23.13198 -21.73178 -20.97452 -20.11195 -20.01186 -18.68499 -16.87775 -16.55901 -16.35826 -16.15521 -15.87061 -15.65016 -15.19636 -14.62731 -14.46040 -14.21911 -14.17941 -13.45620 -13.04981 -12.86769 -12.68972 -12.40930 -12.16277 -11.78942 -11.66449 -11.65383 -11.02949 -10.82500 -10.77492 -10.60650 -10.49329 -10.47203 -9.96120 -9.65574 -9.27995 -9.00591 -8.67873 -8.34668 -8.32221 -5.96731 -3.99324 1.47079 1.81771 2.46570 2.56027 2.86347 3.30943 3.32236 3.39610 3.43088 4.17564 4.45893 4.50499 4.75722 4.87225 4.99330 5.03144 5.10010 5.12476 5.20950 5.25693 5.31194 5.38823 5.48500 5.71687 5.72730 6.05103 6.20017 6.22909 6.47403 6.71357 6.77170 6.95045 6.99145 7.15889 7.19902 7.55054 7.72434 7.87446 7.89275 8.04418 8.45768 9.08594 9.64515 11.14586 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.037870 B = 0.002431 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.192690 B =11516.498612 C =12214.036414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.287 6.287 3 C 0.276 3.724 4 C -0.282 4.282 5 C 0.335 3.665 6 N -0.656 5.656 7 C 0.518 3.482 8 O -0.493 6.493 9 C -0.131 4.131 10 C -0.106 4.106 11 C -0.110 4.110 12 C 0.019 3.981 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.894 5.894 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 N -0.387 5.387 22 C 0.105 3.895 23 N -0.345 5.345 24 H 0.055 0.945 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.181 0.819 28 H 0.412 0.588 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.737 8.897 -0.082 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.191 6.191 3 C 0.072 3.928 4 C -0.314 4.314 5 C 0.115 3.885 6 N -0.304 5.304 7 C 0.306 3.694 8 O -0.363 6.363 9 C -0.171 4.171 10 C -0.144 4.144 11 C -0.148 4.148 12 C -0.018 4.018 13 C -0.559 4.559 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.534 5.534 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 N -0.180 5.180 22 C -0.036 4.036 23 N -0.185 5.185 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.074 0.926 27 H 0.198 0.802 28 H 0.248 0.752 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -26.612 8.235 -0.082 27.858 hybrid contribution 1.352 0.792 0.005 1.567 sum -25.260 9.027 -0.077 26.825 Atomic orbital electron populations 1.22956 0.77825 1.03472 1.01946 1.86334 1.21918 1.21510 1.89346 1.20313 0.91481 0.84981 0.96026 1.20917 0.94038 0.94155 1.22249 1.17978 0.80285 0.90308 0.99906 1.43262 1.02463 1.10772 1.73951 1.21414 0.85123 0.88076 0.74819 1.90691 1.86351 1.14037 1.45239 1.21828 0.89903 1.00771 1.04645 1.21517 0.92947 0.96539 1.03385 1.21648 0.93425 0.99507 1.00178 1.19106 0.91642 0.93661 0.97411 1.21307 0.91207 0.92954 1.50395 0.92703 1.25050 0.99277 0.94833 0.95463 1.69985 1.27937 1.04541 1.50911 0.86556 0.84263 0.79719 0.77561 1.19799 1.21055 1.21051 1.47971 1.01023 1.05876 1.63137 1.21785 1.04081 0.74409 1.03321 1.77422 1.11268 0.94765 1.35019 0.92603 0.88239 0.92595 0.80226 0.75238 0.88432 0.88420 0.91447 0.91442 0.93370 0.93362 0.96517 0.96517 0.93068 0.90770 0.89954 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.69 101.05 1.08 1.37 16 2 O -0.29 -3.77 10.58 -19.70 -0.21 -3.97 16 3 C 0.28 3.93 7.88 -17.14 -0.14 3.79 16 4 C -0.28 -4.19 9.66 -39.64 -0.38 -4.57 16 5 C 0.33 4.08 7.68 -152.69 -1.17 2.91 16 6 N -0.66 -6.30 5.42 -11.35 -0.06 -6.36 16 7 C 0.52 6.47 7.79 -10.99 -0.09 6.39 16 8 O -0.49 -8.23 13.11 5.54 0.07 -8.15 16 9 C -0.13 -1.47 5.70 -27.88 -0.16 -1.63 16 10 C -0.11 -1.73 4.50 -26.73 -0.12 -1.85 16 11 C -0.11 -2.13 5.15 -26.73 -0.14 -2.27 16 12 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 13 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 16 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 21 N -0.39 -4.15 4.04 -67.05 -0.27 -4.43 16 22 C 0.11 0.56 11.29 59.84 0.68 1.24 16 23 N -0.34 -4.49 11.96 30.53 0.36 -4.12 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.18 2.98 5.83 -52.49 -0.31 2.68 16 28 H 0.41 2.21 7.98 -40.82 -0.33 1.88 16 29 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.23 7.51 -51.93 -0.39 -0.16 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 342.28 15.07 5.16 5.16 Total: -1.00 -36.06 342.28 -6.27 -42.33 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -6.05 Total: -2.76 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -0.99 Total: -7.82 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.77 Total: -41.42 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.14 Total: -12.13 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.06 -6.27 -42.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882944915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.066 kcal (2) G-P(sol) polarization free energy of solvation -36.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds