Wall clock time and date at job start Tue Mar 31 2020 05:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35847 * 116.99969 * 2 1 4 4 N 1.30815 * 126.06038 * 0.02562 * 3 2 1 5 5 N 1.39920 * 108.87776 * 179.97438 * 4 3 2 6 6 C 1.46503 * 125.68464 * 180.02562 * 5 4 3 7 7 C 1.34160 * 108.62652 * 359.73196 * 5 4 3 8 8 C 1.38130 * 107.50401 * 0.42757 * 7 5 4 9 9 C 1.47259 * 126.44410 * 179.83280 * 8 7 5 10 10 O 1.21617 * 120.00148 * 222.70485 * 9 8 7 11 11 N 1.34778 * 119.99525 * 42.70815 * 9 8 7 12 12 C 1.46500 * 120.00149 * 5.61779 * 11 9 8 13 13 C 1.50697 * 109.46829 * 264.52969 * 12 11 9 14 14 H 1.08001 * 120.00056 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99767 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99864 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99826 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47250 * 59.99960 * 17 15 13 19 19 H 1.48497 * 109.46694 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47071 * 299.99666 * 17 15 13 21 21 C 1.46502 * 119.99734 * 185.61685 * 11 9 8 22 22 C 1.52996 * 109.47132 * 125.20383 * 21 11 9 23 23 C 1.53002 * 109.47210 * 245.20186 * 21 11 9 24 24 H 1.08998 * 109.47213 * 59.99765 * 1 2 3 25 25 H 1.09004 * 109.47313 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47136 * 299.99840 * 1 2 3 27 27 H 1.08992 * 109.47263 * 89.97305 * 6 5 4 28 28 H 1.08997 * 109.47443 * 209.97920 * 6 5 4 29 29 H 1.09006 * 109.47005 * 329.97590 * 6 5 4 30 30 H 1.07994 * 126.24748 * 180.26824 * 7 5 4 31 31 H 1.08996 * 109.47260 * 24.53124 * 12 11 9 32 32 H 1.09001 * 109.46567 * 144.53499 * 12 11 9 33 33 H 0.97002 * 119.99603 * 179.97438 * 16 15 13 34 34 H 1.09000 * 109.47075 * 5.20041 * 21 11 9 35 35 H 1.09005 * 109.47379 * 180.02562 * 22 21 11 36 36 H 1.09006 * 109.47006 * 299.99725 * 22 21 11 37 37 H 1.09000 * 109.47420 * 59.99869 * 22 21 11 38 38 H 1.09000 * 109.47250 * 300.00391 * 23 21 11 39 39 H 1.09005 * 109.46875 * 59.99790 * 23 21 11 40 40 H 1.09000 * 109.47324 * 179.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 7 1.4531 2.3766 0.0005 5 7 2.4282 3.3800 0.0009 6 6 2.1705 4.8222 0.0020 7 6 3.6386 2.8013 0.0066 8 6 3.4451 1.4336 0.0000 9 6 4.4955 0.4015 -0.0005 10 8 4.3895 -0.5737 -0.7194 11 7 5.5744 0.5377 0.7958 12 6 5.6448 1.6467 1.7505 13 6 6.4132 2.7890 1.1376 14 1 6.8091 2.6982 0.1369 15 6 6.6109 3.9501 1.8545 16 7 6.1284 4.0608 3.0729 17 14 7.5628 5.3664 1.0945 18 1 6.8736 5.8200 -0.1401 19 1 7.6343 6.4904 2.0624 20 1 8.9366 4.9149 0.7572 21 6 6.6766 -0.4232 0.7065 22 6 7.9867 0.3254 0.4540 23 6 6.7801 -1.2039 2.0183 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 2.1064 5.1790 1.0299 28 1 2.9826 5.3369 -0.5114 29 1 1.2304 5.0237 -0.5118 30 1 4.5903 3.3115 0.0124 31 1 4.6363 1.9782 1.9974 32 1 6.1501 1.3139 2.6571 33 1 6.2677 4.8775 3.5773 34 1 6.4895 -1.1155 -0.1144 35 1 8.8068 -0.3896 0.3871 36 1 7.9130 0.8816 -0.4806 37 1 8.1738 1.0177 1.2749 38 1 6.9670 -0.5117 2.8393 39 1 5.8466 -1.7372 2.1983 40 1 7.5998 -1.9192 1.9518 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883959779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:48 Heat of formation + Delta-G solvation = 8.209525 kcal Electronic energy + Delta-G solvation = -23384.166215 eV Core-core repulsion = 20008.740564 eV Total energy + Delta-G solvation = -3375.425650 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91226 -38.63231 -37.85705 -35.53462 -33.10954 -32.41351 -31.39517 -29.29751 -27.62217 -27.34567 -26.43249 -25.77896 -23.01096 -22.44427 -20.55628 -20.14976 -18.30888 -16.87622 -16.62406 -16.42854 -15.80864 -15.52635 -14.87162 -14.64900 -14.57220 -14.36850 -13.89715 -13.35971 -13.03408 -12.61586 -12.41746 -12.38065 -12.21595 -12.00614 -11.69279 -11.64214 -11.47781 -11.30109 -11.03153 -10.90219 -10.76489 -10.66874 -10.34192 -10.28668 -9.89437 -9.61459 -8.96132 -8.66469 -8.48298 -7.86819 -7.54296 -6.25766 -4.33273 2.28075 2.68993 2.90239 3.12284 3.20920 3.23616 3.62643 4.01020 4.13330 4.31286 4.89099 5.02545 5.36285 5.41960 5.44669 5.52725 5.62196 5.63002 5.67023 5.77208 5.84349 5.97256 6.11215 6.24856 6.25946 6.31947 6.39583 6.53212 6.55081 6.85300 6.92870 7.15239 7.30512 7.41534 7.66043 7.68249 7.77286 8.03936 8.12390 8.50424 8.78514 9.22760 9.35241 10.78799 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013371 B = 0.008350 C = 0.005670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.540967 B = 3352.425082 C = 4936.702938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.279 6.279 3 C 0.303 3.697 4 N -0.370 5.370 5 N -0.360 5.360 6 C 0.107 3.893 7 C 0.153 3.847 8 C -0.291 4.291 9 C 0.598 3.402 10 O -0.570 6.570 11 N -0.591 5.591 12 C 0.236 3.764 13 C -0.538 4.538 14 H 0.066 0.934 15 C 0.066 3.934 16 N -0.882 5.882 17 Si 0.887 3.113 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.140 3.860 22 C -0.152 4.152 23 C -0.157 4.157 24 H 0.053 0.947 25 H 0.095 0.905 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.215 0.785 31 H 0.040 0.960 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.879 -0.295 -3.138 5.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.182 6.182 3 C 0.097 3.903 4 N -0.209 5.209 5 N -0.142 5.142 6 C -0.034 4.034 7 C 0.003 3.997 8 C -0.306 4.306 9 C 0.386 3.614 10 O -0.451 6.451 11 N -0.321 5.321 12 C 0.116 3.884 13 C -0.576 4.576 14 H 0.085 0.915 15 C -0.138 4.138 16 N -0.519 5.519 17 Si 0.714 3.286 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.199 1.199 21 C 0.036 3.964 22 C -0.210 4.210 23 C -0.216 4.216 24 H 0.072 0.928 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.231 0.769 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.006 -0.273 -3.318 6.867 hybrid contribution 1.063 0.791 -0.081 1.327 sum -4.943 0.518 -3.399 6.022 Atomic orbital electron populations 1.22910 0.78508 1.03017 1.01710 1.86394 1.21267 1.21453 1.89058 1.20353 0.90221 0.84888 0.94793 1.77042 1.14073 0.94635 1.35199 1.47579 1.03509 1.05891 1.57218 1.21855 1.03507 0.74382 1.03690 1.24263 0.91495 0.92327 0.91621 1.19496 0.90965 0.93307 1.26803 1.17128 0.80859 0.84189 0.79193 1.90654 1.78799 1.32265 1.43426 1.48104 1.16944 1.28744 1.38333 1.19393 0.98177 0.83029 0.87841 1.21600 1.35401 0.98870 1.01763 0.91545 1.24984 0.95514 0.98506 0.94788 1.69935 1.44294 1.27750 1.09969 0.86729 0.81130 0.81739 0.78965 1.20065 1.21166 1.19903 1.20791 0.87007 0.90783 0.97811 1.22133 0.95227 1.00202 1.03399 1.22113 1.01050 0.99874 0.98517 0.92815 0.88638 0.92784 0.90487 0.89173 0.89722 0.76915 0.94251 0.94744 0.92410 0.89796 0.93635 0.92808 0.90226 0.91959 0.93051 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.70 101.05 1.08 1.57 16 2 O -0.28 -5.54 10.57 -19.26 -0.20 -5.74 16 3 C 0.30 6.38 7.89 -16.66 -0.13 6.25 16 4 N -0.37 -7.18 11.90 30.79 0.37 -6.81 16 5 N -0.36 -6.47 3.97 -67.60 -0.27 -6.74 16 6 C 0.11 1.35 11.44 59.85 0.68 2.04 16 7 C 0.15 3.07 9.40 -16.57 -0.16 2.92 16 8 C -0.29 -6.44 5.00 -104.95 -0.52 -6.97 16 9 C 0.60 14.01 7.55 -12.59 -0.10 13.92 16 10 O -0.57 -14.52 16.46 5.26 0.09 -14.43 16 11 N -0.59 -12.96 2.42 -168.80 -0.41 -13.37 16 12 C 0.24 5.46 4.16 -5.19 -0.02 5.44 16 13 C -0.54 -12.51 4.77 -34.44 -0.16 -12.67 16 14 H 0.07 1.56 6.95 -52.49 -0.36 1.19 16 15 C 0.07 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.88 -22.43 13.29 55.43 0.74 -21.69 16 17 Si 0.89 18.50 29.54 -169.99 -5.02 13.48 16 18 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.29 -6.06 7.11 56.52 0.40 -5.65 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 C 0.14 2.72 3.23 -67.93 -0.22 2.50 16 22 C -0.15 -2.74 8.13 37.16 0.30 -2.44 16 23 C -0.16 -2.70 9.25 37.16 0.34 -2.36 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.21 4.35 5.29 -52.49 -0.28 4.07 16 31 H 0.04 0.99 6.03 -51.93 -0.31 0.67 16 32 H 0.03 0.85 6.72 -51.93 -0.35 0.50 16 33 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 34 H 0.08 1.69 6.95 -51.93 -0.36 1.33 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 1.00 7.67 -51.93 -0.40 0.61 16 37 H 0.08 1.57 6.69 -51.93 -0.35 1.23 16 38 H 0.06 1.11 6.88 -51.93 -0.36 0.75 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -30.01 331.20 -4.43 -34.43 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.71 Total: 4.21 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 1.00 Total: 11.67 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.43 Total: -48.61 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.12 Total: -20.18 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.01 -4.43 -34.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883959779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.643 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds