Wall clock time and date at job start Tue Mar 31 2020 05:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09003 * 109.47100 * 305.00507 * 3 2 1 5 5 O 1.42901 * 109.46975 * 64.99896 * 3 2 1 6 6 C 1.52996 * 109.47389 * 184.99905 * 3 2 1 7 7 H 1.09006 * 109.47056 * 300.00623 * 6 3 2 8 8 C 1.53009 * 109.46753 * 60.00078 * 6 3 2 9 9 C 1.50696 * 109.47220 * 180.02562 * 6 3 2 10 10 O 1.21290 * 120.00012 * 0.02562 * 9 6 3 11 11 N 1.34777 * 119.99736 * 179.97438 * 9 6 3 12 12 C 1.40159 * 119.99983 * 179.97438 * 11 9 6 13 13 C 1.40409 * 125.97033 * 0.02562 * 12 11 9 14 14 C 1.35241 * 107.86602 * 179.73843 * 13 12 11 15 15 N 1.34966 * 107.86079 * 0.39163 * 14 13 12 16 16 C 1.46500 * 125.97782 * 179.87198 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71059 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 N 1.31219 * 125.97718 * 179.97438 * 12 11 9 26 26 H 1.08993 * 109.47063 * 299.99712 * 1 2 3 27 27 H 1.09003 * 109.46857 * 59.99887 * 1 2 3 28 28 H 1.08999 * 109.46662 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47118 * 240.00145 * 2 1 3 30 30 H 1.09002 * 109.47102 * 120.00605 * 2 1 3 31 31 H 0.96701 * 113.99780 * 59.99900 * 5 3 2 32 32 H 1.09003 * 109.47155 * 300.00250 * 8 6 3 33 33 H 1.08996 * 109.46892 * 60.00620 * 8 6 3 34 34 H 1.09000 * 109.46691 * 180.02562 * 8 6 3 35 35 H 0.97003 * 120.00166 * 0.02562 * 11 9 6 36 36 H 1.08002 * 126.06850 * 0.02562 * 13 12 11 37 37 H 1.08003 * 126.07024 * 180.26845 * 14 13 12 38 38 H 1.09004 * 109.47078 * 4.71821 * 16 15 14 39 39 H 1.08993 * 109.47364 * 244.71592 * 16 15 14 40 40 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6620 2.0814 1.2211 6 6 3.5648 1.4444 -0.1257 7 1 3.9995 0.9053 0.7161 8 6 3.9696 0.7604 -1.4331 9 6 4.0672 2.8652 -0.1251 10 8 3.2828 3.7857 -0.0326 11 7 5.3881 3.1129 -0.2261 12 6 5.8553 4.4343 -0.2261 13 6 5.0629 5.5892 -0.1271 14 6 5.8866 6.6614 -0.1578 15 7 7.1519 6.2080 -0.2805 16 6 8.3590 7.0348 -0.3549 17 6 9.3250 6.6117 0.7217 18 1 9.0657 5.8070 1.3938 19 6 10.5395 7.2517 0.8487 20 7 10.8574 8.2280 0.0268 21 14 11.7371 6.7267 2.1827 22 1 12.9631 7.5608 2.1035 23 1 11.1034 6.9031 3.5141 24 1 12.0967 5.2987 1.9909 25 7 7.1097 4.8085 -0.3176 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0142 1.6542 2.0139 32 1 3.6062 -0.2673 -1.4332 33 1 3.5350 1.2995 -2.2749 34 1 5.0559 0.7613 -1.5225 35 1 6.0154 2.3767 -0.2997 36 1 3.9870 5.6164 -0.0373 37 1 5.5852 7.6968 -0.0971 38 1 8.0916 8.0819 -0.2119 39 1 8.8258 6.9092 -1.3318 40 1 10.2356 8.5005 -0.6661 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900745110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:30 Heat of formation + Delta-G solvation = -21.381119 kcal Electronic energy + Delta-G solvation = -21760.476692 eV Core-core repulsion = 18383.767895 eV Total energy + Delta-G solvation = -3376.708797 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.83511 -39.79230 -37.72820 -34.81154 -34.03904 -33.51948 -32.27906 -30.69673 -29.36139 -26.40989 -26.27217 -24.61417 -22.99786 -21.89388 -21.00493 -20.27827 -19.43652 -17.25108 -17.18250 -16.80320 -16.43947 -15.70349 -15.34367 -15.19255 -14.66656 -14.20567 -14.02742 -13.79812 -13.57376 -13.20195 -12.87619 -12.62754 -12.45810 -12.32289 -12.22209 -12.14783 -11.80404 -11.75256 -11.21212 -11.16204 -10.91152 -10.81075 -10.41523 -10.17126 -10.16167 -9.98786 -9.46499 -8.99986 -8.58694 -8.18916 -7.50802 -6.58605 -4.32615 2.32944 2.72310 2.87573 3.37141 3.38758 3.57664 3.67279 3.75126 4.16463 4.23291 4.39743 4.43788 4.72249 4.75698 4.86719 4.90920 5.13816 5.15630 5.27255 5.37921 5.41940 5.48693 5.58070 5.63354 5.73328 5.76540 5.95308 5.96213 6.22575 6.43087 6.52575 6.61671 6.75176 7.37365 7.49656 7.51781 7.71573 7.83906 8.28256 8.33919 8.54945 8.62371 9.35624 10.78913 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034865 B = 0.003112 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.909633 B = 8996.692767 C = 9256.404490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.159 4.159 3 C 0.128 3.872 4 H 0.104 0.896 5 O -0.542 6.542 6 C -0.140 4.140 7 H 0.101 0.899 8 C -0.149 4.149 9 C 0.521 3.479 10 O -0.498 6.498 11 N -0.633 5.633 12 C 0.259 3.741 13 C -0.285 4.285 14 C 0.050 3.950 15 N -0.318 5.318 16 C 0.249 3.751 17 C -0.608 4.608 18 H 0.063 0.937 19 C 0.022 3.978 20 N -0.905 5.905 21 Si 1.077 2.923 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.285 1.285 25 N -0.304 5.304 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.367 0.633 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.409 0.591 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.046 0.954 39 H 0.034 0.966 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.603 -16.607 -1.116 23.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.197 4.197 3 C 0.068 3.932 4 H 0.122 0.878 5 O -0.345 6.345 6 C -0.162 4.162 7 H 0.119 0.881 8 C -0.206 4.206 9 C 0.306 3.694 10 O -0.369 6.369 11 N -0.282 5.282 12 C 0.006 3.994 13 C -0.316 4.316 14 C -0.100 4.100 15 N -0.100 5.100 16 C 0.131 3.869 17 C -0.646 4.646 18 H 0.081 0.919 19 C -0.182 4.182 20 N -0.540 5.540 21 Si 0.904 3.096 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.212 1.212 25 N -0.135 5.135 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.213 0.787 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.244 0.756 36 H 0.179 0.821 37 H 0.185 0.815 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.698 -15.519 -0.952 21.396 hybrid contribution -1.523 -0.806 -0.276 1.745 sum -16.221 -16.325 -1.228 23.046 Atomic orbital electron populations 1.21691 0.94912 1.01345 1.02656 1.22349 0.97386 0.96991 1.02926 1.21746 0.89913 0.92567 0.89009 0.87778 1.86750 1.76090 1.56814 1.14869 1.22124 0.99124 0.93452 1.01541 0.88069 1.21853 1.02358 1.00949 0.95486 1.20436 0.81068 0.91400 0.76541 1.90687 1.54775 1.45377 1.46074 1.42557 1.07985 1.05019 1.72602 1.19148 0.91937 0.85247 1.03083 1.21550 1.01364 0.89115 1.19561 1.22567 0.84941 1.00028 1.02445 1.48776 1.06703 1.02629 1.51896 1.19752 0.79833 0.88284 0.99007 1.22101 1.03304 1.22152 1.17027 0.91876 1.25929 0.97546 0.93875 1.00864 1.70851 1.38763 1.26966 1.17437 0.83418 0.75632 0.75977 0.74583 1.20507 1.21233 1.21151 1.77338 1.15861 0.92133 1.28148 0.91953 0.92651 0.92892 0.90581 0.91573 0.78679 0.90768 0.91548 0.91539 0.75634 0.82127 0.81533 0.93639 0.94805 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.81 37.16 0.36 -0.63 16 2 C -0.16 -0.98 5.40 -26.73 -0.14 -1.13 16 3 C 0.13 1.14 2.09 -26.73 -0.06 1.09 16 4 H 0.10 1.11 8.10 -51.93 -0.42 0.68 16 5 O -0.54 -5.94 11.77 -53.51 -0.63 -6.57 16 6 C -0.14 -1.22 2.50 -91.77 -0.23 -1.45 16 7 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 8 C -0.15 -1.02 8.75 37.16 0.33 -0.69 16 9 C 0.52 7.28 6.98 -10.99 -0.08 7.20 16 10 O -0.50 -8.78 12.41 -12.73 -0.16 -8.94 16 11 N -0.63 -9.72 5.34 -11.13 -0.06 -9.78 16 12 C 0.26 5.28 8.11 -154.39 -1.25 4.03 16 13 C -0.28 -5.79 9.61 -39.83 -0.38 -6.18 16 14 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 15 N -0.32 -7.57 3.67 -62.56 -0.23 -7.80 16 16 C 0.25 6.39 5.57 -5.19 -0.03 6.36 16 17 C -0.61 -17.23 9.24 -34.44 -0.32 -17.55 16 18 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 19 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 20 N -0.90 -26.46 13.65 55.43 0.76 -25.71 16 21 Si 1.08 24.99 29.90 -169.99 -5.08 19.91 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 N -0.30 -7.13 12.42 31.44 0.39 -6.74 16 26 H 0.06 0.47 7.82 -51.93 -0.41 0.07 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.39 6.17 -51.93 -0.32 0.07 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.37 2.69 9.05 45.56 0.41 3.11 16 32 H 0.07 0.35 6.32 -51.93 -0.33 0.02 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.44 7.57 -51.93 -0.39 0.04 16 35 H 0.41 5.10 8.24 -40.82 -0.34 4.77 16 36 H 0.16 3.21 5.92 -52.49 -0.31 2.90 16 37 H 0.17 2.80 8.06 -52.48 -0.42 2.38 16 38 H 0.05 1.13 7.94 -51.93 -0.41 0.71 16 39 H 0.03 0.90 8.00 -51.93 -0.42 0.48 16 40 H 0.27 7.64 7.22 -40.82 -0.29 7.35 16 LS Contribution 334.36 15.07 5.04 5.04 Total: -1.00 -35.00 334.36 -7.03 -42.03 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -4.97 Total: 6.14 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -2.09 Total: -7.59 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.86 Total: -50.02 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.79 Total: -15.51 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.00 -7.03 -42.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900745110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.650 kcal (2) G-P(sol) polarization free energy of solvation -34.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds