Wall clock time and date at job start Tue Mar 31 2020 05:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09003 * 109.47100 * 305.00507 * 3 2 1 5 5 O 1.42901 * 109.46975 * 64.99896 * 3 2 1 6 6 C 1.52996 * 109.47389 * 184.99905 * 3 2 1 7 7 H 1.09006 * 109.47056 * 300.00623 * 6 3 2 8 8 C 1.53009 * 109.46753 * 60.00078 * 6 3 2 9 9 C 1.50696 * 109.47220 * 180.02562 * 6 3 2 10 10 O 1.21290 * 120.00012 * 0.02562 * 9 6 3 11 11 N 1.34777 * 119.99736 * 179.97438 * 9 6 3 12 12 C 1.40159 * 119.99983 * 179.97438 * 11 9 6 13 13 C 1.40409 * 125.97033 * 0.02562 * 12 11 9 14 14 C 1.35241 * 107.86602 * 179.73843 * 13 12 11 15 15 N 1.34966 * 107.86079 * 0.39163 * 14 13 12 16 16 C 1.46500 * 125.97782 * 179.87198 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71059 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 N 1.31219 * 125.97718 * 179.97438 * 12 11 9 26 26 H 1.08993 * 109.47063 * 299.99712 * 1 2 3 27 27 H 1.09003 * 109.46857 * 59.99887 * 1 2 3 28 28 H 1.08999 * 109.46662 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47118 * 240.00145 * 2 1 3 30 30 H 1.09002 * 109.47102 * 120.00605 * 2 1 3 31 31 H 0.96701 * 113.99780 * 59.99900 * 5 3 2 32 32 H 1.09003 * 109.47155 * 300.00250 * 8 6 3 33 33 H 1.08996 * 109.46892 * 60.00620 * 8 6 3 34 34 H 1.09000 * 109.46691 * 180.02562 * 8 6 3 35 35 H 0.97003 * 120.00166 * 0.02562 * 11 9 6 36 36 H 1.08002 * 126.06850 * 0.02562 * 13 12 11 37 37 H 1.08003 * 126.07024 * 180.26845 * 14 13 12 38 38 H 1.09004 * 109.47078 * 4.71821 * 16 15 14 39 39 H 1.08993 * 109.47364 * 244.71592 * 16 15 14 40 40 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6620 2.0814 1.2211 6 6 3.5648 1.4444 -0.1257 7 1 3.9995 0.9053 0.7161 8 6 3.9696 0.7604 -1.4331 9 6 4.0672 2.8652 -0.1251 10 8 3.2828 3.7857 -0.0326 11 7 5.3881 3.1129 -0.2261 12 6 5.8553 4.4343 -0.2261 13 6 5.0629 5.5892 -0.1271 14 6 5.8866 6.6614 -0.1578 15 7 7.1519 6.2080 -0.2805 16 6 8.3590 7.0348 -0.3549 17 6 9.3250 6.6117 0.7217 18 1 9.0657 5.8070 1.3938 19 6 10.5395 7.2517 0.8487 20 7 10.8574 8.2280 0.0268 21 14 11.7371 6.7267 2.1827 22 1 12.9631 7.5608 2.1035 23 1 11.1034 6.9031 3.5141 24 1 12.0967 5.2987 1.9909 25 7 7.1097 4.8085 -0.3176 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0142 1.6542 2.0139 32 1 3.6062 -0.2673 -1.4332 33 1 3.5350 1.2995 -2.2749 34 1 5.0559 0.7613 -1.5225 35 1 6.0154 2.3767 -0.2997 36 1 3.9870 5.6164 -0.0373 37 1 5.5852 7.6968 -0.0971 38 1 8.0916 8.0819 -0.2119 39 1 8.8258 6.9092 -1.3318 40 1 10.2356 8.5005 -0.6661 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900745110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:30 Heat of formation + Delta-G solvation = -45.948439 kcal Electronic energy + Delta-G solvation = -21761.542011 eV Core-core repulsion = 18383.767895 eV Total energy + Delta-G solvation = -3377.774116 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.33459 -41.01105 -38.61973 -36.38660 -35.58165 -34.61114 -33.10564 -32.28573 -31.03286 -28.27215 -26.88383 -25.79812 -24.73004 -22.94629 -22.22345 -21.61247 -20.74847 -19.25567 -18.48269 -17.90870 -17.52025 -16.88151 -16.62113 -16.24535 -15.79171 -15.57159 -15.48962 -15.18100 -15.00819 -14.35579 -14.12663 -13.92805 -13.75482 -13.44813 -13.34465 -13.17935 -12.87557 -12.73384 -12.61623 -12.44276 -11.98373 -11.95905 -11.70622 -11.67165 -11.54783 -11.01552 -10.91988 -10.70889 -10.60798 -9.85124 -9.21822 -8.79189 -6.57625 0.88169 1.30062 1.41464 1.50572 1.56957 1.78759 2.18081 2.27991 2.48376 2.99754 3.39961 3.52473 3.64564 3.85951 4.09044 4.11374 4.20659 4.25770 4.32134 4.54360 4.60313 4.72654 4.75928 4.79843 4.81246 4.86112 4.86523 5.04275 5.09312 5.14038 5.26270 5.39570 5.46240 5.53622 5.81952 5.91911 6.21528 6.25418 6.39683 6.93371 6.94661 7.13374 7.18409 8.56729 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034865 B = 0.003112 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.909633 B = 8996.692767 C = 9256.404490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.149 4.149 3 C 0.127 3.873 4 H 0.080 0.920 5 O -0.569 6.569 6 C -0.126 4.126 7 H 0.132 0.868 8 C -0.148 4.148 9 C 0.518 3.482 10 O -0.536 6.536 11 N -0.627 5.627 12 C 0.268 3.732 13 C -0.293 4.293 14 C 0.054 3.946 15 N -0.344 5.344 16 C 0.260 3.740 17 C -0.622 4.622 18 H 0.045 0.955 19 C -0.019 4.019 20 N -0.923 5.923 21 Si 1.121 2.879 22 H -0.275 1.275 23 H -0.271 1.271 24 H -0.274 1.274 25 N -0.346 5.346 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.381 0.619 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.423 0.577 36 H 0.166 0.834 37 H 0.200 0.800 38 H 0.053 0.947 39 H 0.017 0.983 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.038 -18.838 -0.408 25.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.186 4.186 3 C 0.067 3.933 4 H 0.098 0.902 5 O -0.376 6.376 6 C -0.148 4.148 7 H 0.150 0.850 8 C -0.205 4.205 9 C 0.306 3.694 10 O -0.409 6.409 11 N -0.277 5.277 12 C 0.013 3.987 13 C -0.324 4.324 14 C -0.094 4.094 15 N -0.126 5.126 16 C 0.140 3.860 17 C -0.660 4.660 18 H 0.063 0.937 19 C -0.219 4.219 20 N -0.559 5.559 21 Si 0.941 3.059 22 H -0.200 1.200 23 H -0.197 1.197 24 H -0.199 1.199 25 N -0.176 5.176 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.230 0.770 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.260 0.740 36 H 0.183 0.817 37 H 0.217 0.783 38 H 0.070 0.930 39 H 0.035 0.965 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.161 -17.788 -0.256 23.374 hybrid contribution -1.553 -0.150 -0.527 1.647 sum -16.714 -17.938 -0.783 24.531 Atomic orbital electron populations 1.21705 0.95532 1.01936 1.01642 1.22284 0.96750 0.94941 1.04648 1.21769 0.89827 0.93981 0.87691 0.90202 1.86710 1.76673 1.58072 1.16117 1.22184 0.98849 0.89796 1.03921 0.84988 1.21911 1.02748 1.02195 0.93682 1.21563 0.79924 0.93371 0.74576 1.90664 1.55492 1.47221 1.47554 1.42790 1.09006 1.03460 1.72440 1.19546 0.91081 0.87466 1.00614 1.21725 1.01520 0.89305 1.19804 1.23164 0.83757 1.01797 1.00723 1.48574 1.06922 1.02937 1.54184 1.19420 0.80391 0.88890 0.97281 1.22280 1.04394 1.21802 1.17500 0.93653 1.27313 0.99199 0.93233 1.02151 1.70948 1.38890 1.27970 1.18065 0.82875 0.73974 0.76251 0.72788 1.19950 1.19657 1.19927 1.77257 1.17614 0.92236 1.30541 0.93271 0.93465 0.91442 0.88809 0.89734 0.77048 0.87719 0.92647 0.91038 0.73964 0.81659 0.78319 0.92951 0.96547 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.81 71.98 0.71 -1.04 16 2 C -0.15 -1.38 5.40 30.60 0.17 -1.22 16 3 C 0.13 2.05 2.09 30.59 0.06 2.12 16 4 H 0.08 1.67 8.10 -2.39 -0.02 1.65 16 5 O -0.57 -11.89 11.77 -131.50 -1.55 -13.44 16 6 C -0.13 -1.87 2.50 -11.54 -0.03 -1.90 16 7 H 0.13 1.23 8.14 -2.38 -0.02 1.21 16 8 C -0.15 -1.57 8.75 71.99 0.63 -0.94 16 9 C 0.52 13.86 6.98 87.66 0.61 14.47 16 10 O -0.54 -18.77 12.41 14.42 0.18 -18.59 16 11 N -0.63 -18.58 5.34 -307.52 -1.64 -20.22 16 12 C 0.27 10.87 8.11 133.32 1.08 11.95 16 13 C -0.29 -11.86 9.61 22.11 0.21 -11.65 16 14 C 0.05 2.20 11.44 83.52 0.96 3.15 16 15 N -0.34 -16.58 3.67 -351.83 -1.29 -17.87 16 16 C 0.26 13.58 5.57 85.64 0.48 14.05 16 17 C -0.62 -35.74 9.24 25.60 0.24 -35.50 16 18 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 19 C -0.02 -1.09 5.46 84.65 0.46 -0.63 16 20 N -0.92 -54.28 13.65 21.45 0.29 -53.99 16 21 Si 1.12 49.76 29.90 68.60 2.05 51.82 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 N -0.35 -16.39 12.42 -54.45 -0.68 -17.06 16 26 H 0.05 0.69 7.82 -2.39 -0.02 0.67 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 0.57 6.17 -2.39 -0.01 0.55 16 30 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.38 4.96 9.05 -74.06 -0.67 4.29 16 32 H 0.10 0.52 6.32 -2.39 -0.02 0.50 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.72 7.57 -2.39 -0.02 0.70 16 35 H 0.42 9.90 8.24 -92.71 -0.76 9.14 16 36 H 0.17 6.58 5.92 -2.91 -0.02 6.57 16 37 H 0.20 6.48 8.06 -2.91 -0.02 6.46 16 38 H 0.05 2.63 7.94 -2.39 -0.02 2.62 16 39 H 0.02 0.91 8.00 -2.39 -0.02 0.89 16 40 H 0.26 15.18 7.22 -92.71 -0.67 14.51 16 Total: -1.00 -76.99 334.36 2.67 -74.32 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -0.27 Total: 22.16 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 5.57 Total: -7.12 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -3.32 Total: -109.15 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -1.37 Total: -32.03 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.05 Total: 51.82 kcal Total: -76.99 2.67 -74.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900745110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.369 kcal (2) G-P(sol) polarization free energy of solvation -76.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds