Wall clock time and date at job start Tue Mar 31 2020 05:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.46955 * 2 1 4 4 H 1.08999 * 109.47254 * 55.00476 * 3 2 1 5 5 O 1.42897 * 109.47434 * 295.00286 * 3 2 1 6 6 C 1.53004 * 109.46633 * 175.00137 * 3 2 1 7 7 H 1.09000 * 109.47381 * 60.00603 * 6 3 2 8 8 C 1.52998 * 109.47354 * 299.99844 * 6 3 2 9 9 C 1.50708 * 109.47005 * 180.02562 * 6 3 2 10 10 O 1.21289 * 119.99669 * 359.97438 * 9 6 3 11 11 N 1.34772 * 119.99727 * 180.02562 * 9 6 3 12 12 C 1.40163 * 119.99566 * 179.97438 * 11 9 6 13 13 C 1.40409 * 125.97252 * 0.02562 * 12 11 9 14 14 C 1.35241 * 107.86602 * 179.76019 * 13 12 11 15 15 N 1.34966 * 107.86079 * 0.39163 * 14 13 12 16 16 C 1.46500 * 125.97782 * 179.87198 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71059 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 N 1.31219 * 125.97499 * 180.02562 * 12 11 9 26 26 H 1.08994 * 109.46932 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46790 * 299.99783 * 1 2 3 28 28 H 1.08991 * 109.47029 * 59.99740 * 1 2 3 29 29 H 1.09001 * 109.46790 * 240.00216 * 2 1 3 30 30 H 1.08992 * 109.47300 * 120.00736 * 2 1 3 31 31 H 0.96708 * 113.99932 * 300.00229 * 5 3 2 32 32 H 1.09002 * 109.46542 * 60.00167 * 8 6 3 33 33 H 1.08996 * 109.47124 * 179.97438 * 8 6 3 34 34 H 1.09000 * 109.47497 * 300.00688 * 8 6 3 35 35 H 0.96996 * 120.00403 * 359.97438 * 11 9 6 36 36 H 1.08002 * 126.06850 * 0.02562 * 13 12 11 37 37 H 1.08004 * 126.06994 * 180.24391 * 14 13 12 38 38 H 1.09004 * 109.47078 * 4.71821 * 16 15 14 39 39 H 1.08993 * 109.47364 * 244.71592 * 16 15 14 40 40 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 8 1.6620 2.0814 -1.2210 6 6 3.5649 1.4442 0.1257 7 1 3.9995 0.9053 -0.7162 8 6 3.9697 0.7602 1.4330 9 6 4.0673 2.8651 0.1263 10 8 3.2828 3.7856 0.0348 11 7 5.3882 3.1127 0.2276 12 6 5.8554 4.4342 0.2277 13 6 5.0630 5.5891 0.1296 14 6 5.8858 6.6616 0.1713 15 7 7.1520 6.2078 0.2824 16 6 8.3591 7.0346 0.3575 17 6 9.1352 6.6789 1.5994 18 1 8.7663 5.9132 2.2658 19 6 10.3160 7.3309 1.8849 20 7 10.7678 8.2595 1.0706 21 14 11.2783 6.8894 3.4239 22 1 12.5049 7.7234 3.4970 23 1 10.4375 7.1396 4.6222 24 1 11.6575 5.4545 3.3760 25 7 7.1098 4.8083 0.3194 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8898 31 1 2.0141 1.6542 -2.0139 32 1 3.6063 -0.2675 1.4329 33 1 5.0560 0.7610 1.5223 34 1 3.5351 1.2991 2.2749 35 1 6.0155 2.3765 0.3005 36 1 3.9869 5.6164 0.0413 37 1 5.5835 7.6973 0.1219 38 1 8.0770 8.0869 0.3944 39 1 8.9779 6.8549 -0.5216 40 1 10.2683 8.4886 0.2713 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900745113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:34 Heat of formation + Delta-G solvation = -21.387252 kcal Electronic energy + Delta-G solvation = -21764.310771 eV Core-core repulsion = 18387.601708 eV Total energy + Delta-G solvation = -3376.709063 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.83528 -39.79280 -37.73203 -34.81166 -34.04040 -33.52105 -32.27787 -30.69655 -29.36146 -26.40968 -26.26685 -24.61162 -22.99825 -21.89485 -21.00577 -20.27879 -19.43661 -17.24855 -17.18441 -16.80864 -16.43270 -15.72665 -15.44201 -14.96450 -14.70798 -14.41285 -13.88606 -13.76945 -13.60424 -13.18195 -12.86620 -12.70596 -12.39850 -12.27766 -12.20733 -12.19110 -11.84954 -11.71768 -11.21172 -11.15982 -10.91232 -10.81392 -10.41503 -10.17169 -10.16412 -9.98979 -9.46471 -9.00033 -8.58766 -8.18930 -7.50821 -6.58655 -4.32676 2.33055 2.71792 2.88020 3.36995 3.38649 3.57545 3.67259 3.75120 4.16348 4.23249 4.39764 4.43648 4.72415 4.75957 4.87291 4.90667 5.13983 5.15655 5.27814 5.38983 5.42405 5.48859 5.58250 5.64073 5.73337 5.77722 5.95693 5.96290 6.22554 6.43081 6.52582 6.61680 6.75204 7.37350 7.49616 7.50836 7.71546 7.83883 8.28253 8.33829 8.54911 8.62323 9.35574 10.78860 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035591 B = 0.003162 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.537453 B = 8851.938290 C = 9413.301408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.159 4.159 3 C 0.127 3.873 4 H 0.105 0.895 5 O -0.542 6.542 6 C -0.140 4.140 7 H 0.101 0.899 8 C -0.150 4.150 9 C 0.520 3.480 10 O -0.498 6.498 11 N -0.633 5.633 12 C 0.259 3.741 13 C -0.285 4.285 14 C 0.050 3.950 15 N -0.318 5.318 16 C 0.249 3.751 17 C -0.608 4.608 18 H 0.063 0.937 19 C 0.022 3.978 20 N -0.905 5.905 21 Si 1.077 2.923 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.285 1.285 25 N -0.304 5.304 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.367 0.633 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.409 0.591 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.046 0.954 39 H 0.034 0.966 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.307 -16.710 -2.478 23.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.196 4.196 3 C 0.068 3.932 4 H 0.123 0.877 5 O -0.345 6.345 6 C -0.162 4.162 7 H 0.119 0.881 8 C -0.207 4.207 9 C 0.305 3.695 10 O -0.369 6.369 11 N -0.282 5.282 12 C 0.006 3.994 13 C -0.316 4.316 14 C -0.100 4.100 15 N -0.100 5.100 16 C 0.131 3.869 17 C -0.646 4.646 18 H 0.081 0.919 19 C -0.182 4.182 20 N -0.540 5.540 21 Si 0.904 3.096 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.212 1.212 25 N -0.135 5.135 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.213 0.787 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.244 0.756 36 H 0.179 0.821 37 H 0.185 0.815 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.522 -15.579 -1.169 21.330 hybrid contribution -1.396 -0.851 -1.274 2.073 sum -15.918 -16.430 -2.444 23.007 Atomic orbital electron populations 1.21691 0.94910 1.01347 1.02660 1.22346 0.97388 0.96984 1.02925 1.21750 0.89932 0.92579 0.88987 0.87743 1.86752 1.76100 1.56803 1.14861 1.22122 0.99102 0.93436 1.01535 0.88105 1.21857 1.02407 1.00940 0.95500 1.20441 0.81067 0.91406 0.76541 1.90687 1.54760 1.45376 1.46098 1.42555 1.07983 1.05021 1.72601 1.19148 0.92020 0.85245 1.03003 1.21550 1.01347 0.89099 1.19592 1.22568 0.84970 1.00000 1.02445 1.48775 1.06799 1.02630 1.51797 1.19752 0.79647 0.88183 0.99295 1.22100 1.09612 1.24938 1.07932 0.91877 1.25929 0.95424 0.93516 1.03347 1.70850 1.40677 1.29519 1.12967 0.83418 0.76021 0.76121 0.74051 1.20507 1.21237 1.21150 1.77338 1.16058 0.92165 1.27919 0.92890 0.92625 0.91976 0.91597 0.90555 0.78739 0.90772 0.91506 0.91497 0.75633 0.82127 0.81532 0.93639 0.94803 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.81 37.16 0.36 -0.63 16 2 C -0.16 -0.98 5.40 -26.73 -0.14 -1.13 16 3 C 0.13 1.14 2.09 -26.73 -0.06 1.09 16 4 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 5 O -0.54 -5.85 11.77 -53.48 -0.63 -6.48 16 6 C -0.14 -1.22 2.50 -91.77 -0.23 -1.45 16 7 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 8 C -0.15 -1.06 8.74 37.16 0.32 -0.73 16 9 C 0.52 7.28 6.97 -10.98 -0.08 7.20 16 10 O -0.50 -8.79 12.41 -12.70 -0.16 -8.94 16 11 N -0.63 -9.72 5.34 -11.13 -0.06 -9.78 16 12 C 0.26 5.28 8.11 -154.38 -1.25 4.03 16 13 C -0.28 -5.79 9.61 -39.83 -0.38 -6.18 16 14 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 15 N -0.32 -7.57 3.67 -62.56 -0.23 -7.80 16 16 C 0.25 6.39 5.57 -5.19 -0.03 6.36 16 17 C -0.61 -17.22 9.24 -34.44 -0.32 -17.53 16 18 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 19 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 20 N -0.90 -26.46 13.65 55.43 0.76 -25.70 16 21 Si 1.08 24.97 29.90 -169.99 -5.08 19.89 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 25 N -0.30 -7.13 12.42 31.44 0.39 -6.74 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.47 7.82 -51.93 -0.41 0.06 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.39 6.17 -51.93 -0.32 0.07 16 31 H 0.37 2.60 9.05 45.56 0.41 3.01 16 32 H 0.07 0.36 6.32 -51.93 -0.33 0.04 16 33 H 0.07 0.46 7.56 -51.93 -0.39 0.07 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.41 5.10 8.24 -40.82 -0.34 4.77 16 36 H 0.16 3.21 5.92 -52.49 -0.31 2.90 16 37 H 0.17 2.80 8.06 -52.48 -0.42 2.38 16 38 H 0.05 1.13 7.94 -51.93 -0.41 0.71 16 39 H 0.03 0.90 8.00 -51.93 -0.42 0.49 16 40 H 0.27 7.64 7.22 -40.82 -0.29 7.35 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -34.97 334.35 -7.03 -42.01 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -4.97 Total: 6.12 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.09 Total: -7.62 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.86 Total: -50.01 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.79 Total: -15.43 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.89 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.97 -7.03 -42.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900745113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.620 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds