Wall clock time and date at job start Tue Mar 31 2020 05:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47122 * 2 1 4 4 C 1.52997 * 109.47006 * 119.99686 * 2 1 3 5 5 N 1.46503 * 109.47168 * 175.00387 * 4 2 1 6 6 N 1.40120 * 126.16479 * 95.27916 * 5 4 2 7 7 H 0.96993 * 125.91588 * 0.04301 * 6 5 4 8 8 C 1.36602 * 108.17524 * 180.16412 * 6 5 4 9 9 C 1.50703 * 125.77476 * 179.84107 * 8 6 5 10 10 C 1.50697 * 109.47010 * 274.72143 * 9 8 6 11 11 O 1.21293 * 120.00417 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99909 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99829 * 359.97438 * 12 10 9 14 14 C 1.37096 * 119.99535 * 179.97438 * 12 10 9 15 15 H 1.07996 * 120.00500 * 24.39547 * 14 12 10 16 16 C 1.38955 * 119.99464 * 204.39355 * 14 12 10 17 17 N 1.31406 * 119.99952 * 12.64062 * 16 14 12 18 18 Si 1.86803 * 119.99962 * 192.64263 * 16 14 12 19 19 H 1.48505 * 109.46891 * 59.99576 * 18 16 14 20 20 H 1.48496 * 109.47369 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47072 * 300.00172 * 18 16 14 22 22 C 1.34825 * 108.45391 * 359.58071 * 8 6 5 23 23 C 1.34872 * 126.16121 * 274.97825 * 5 4 2 24 24 O 1.21780 * 126.19394 * 359.97438 * 23 5 4 25 25 H 1.08995 * 109.46798 * 300.00226 * 1 2 3 26 26 H 1.08999 * 109.46760 * 60.00484 * 1 2 3 27 27 H 1.08997 * 109.46614 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47501 * 239.99895 * 2 1 3 29 29 H 1.09004 * 109.47575 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.46954 * 299.99872 * 3 2 1 31 31 H 1.09000 * 109.47532 * 59.99706 * 3 2 1 32 32 H 1.08993 * 109.47120 * 55.00062 * 4 2 1 33 33 H 1.09005 * 109.47259 * 294.99888 * 4 2 1 34 34 H 1.09000 * 109.47577 * 154.71823 * 9 8 6 35 35 H 1.09007 * 109.47045 * 34.71475 * 9 8 6 36 36 H 1.08994 * 109.47036 * 85.86724 * 13 12 10 37 37 H 1.08999 * 109.46664 * 205.86415 * 13 12 10 38 38 H 1.09001 * 109.47464 * 325.86104 * 13 12 10 39 39 H 0.97006 * 119.99946 * 180.02562 * 17 16 14 40 40 H 1.08003 * 125.95950 * 180.28946 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8262 1.1907 6 7 4.4168 0.0532 1.7819 7 1 4.1949 0.8402 2.3037 8 6 5.6771 -0.3880 1.4940 9 6 6.9615 0.2667 1.9331 10 6 7.3329 1.3507 0.9544 11 8 6.6246 1.5699 -0.0055 12 7 8.4522 2.0769 1.1458 13 6 9.3074 1.8126 2.3055 14 6 8.7903 3.0627 0.2551 15 1 8.0264 3.5310 -0.3478 16 6 10.1159 3.4593 0.1280 17 7 11.0725 2.7361 0.6653 18 14 10.5382 5.0207 -0.8065 19 1 9.8773 6.1808 -0.1564 20 1 12.0097 5.2206 -0.7971 21 1 10.0632 4.9022 -2.2085 22 6 5.5776 -1.5115 0.7554 23 6 4.2041 -1.7901 0.5627 24 8 3.7411 -2.7304 -0.0576 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8935 -0.5138 -0.8899 29 1 3.1301 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6054 -1.7197 1.2952 33 1 1.7517 -0.1582 2.1370 34 1 7.7559 -0.4788 1.9683 35 1 6.8274 0.7018 2.9236 36 1 10.0084 1.0133 2.0654 37 1 9.8605 2.7160 2.5624 38 1 8.6895 1.5119 3.1517 39 1 11.9979 3.0132 0.5770 40 1 6.4026 -2.0970 0.3773 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931238949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:50 Heat of formation + Delta-G solvation = 5.379305 kcal Electronic energy + Delta-G solvation = -22378.024105 eV Core-core repulsion = 19002.475727 eV Total energy + Delta-G solvation = -3375.548378 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30651 -38.56111 -36.65517 -36.49084 -34.77217 -32.64759 -31.69058 -29.62786 -29.29894 -27.25701 -26.42172 -25.61161 -24.21648 -21.11637 -20.89381 -19.94031 -19.08223 -17.71595 -16.97617 -16.25856 -15.63420 -15.46842 -15.17965 -14.76281 -14.55870 -14.27238 -13.89632 -13.81001 -13.33508 -13.05383 -12.70450 -12.51559 -12.43636 -12.24125 -12.12573 -11.86812 -11.58418 -11.35650 -11.33214 -11.30142 -11.06847 -10.91486 -10.86338 -10.46017 -10.34494 -9.43774 -9.07965 -8.97852 -8.48837 -7.75987 -7.54406 -6.40484 -3.97273 1.82830 2.03701 3.13732 3.20722 3.23986 3.64389 3.74940 4.01547 4.08559 4.59985 4.68822 4.70620 4.93120 4.96339 5.02713 5.11496 5.32125 5.39624 5.47694 5.51680 5.67727 5.71016 5.76730 5.79970 5.86138 5.96389 6.14001 6.18981 6.21657 6.28174 6.36197 6.70704 6.74366 7.10302 7.46412 7.49328 7.76229 8.03654 8.38215 8.63793 9.09096 9.31000 9.85302 10.64280 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024456 B = 0.004071 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.641386 B = 6875.875406 C = 7522.343108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C -0.151 4.151 4 C 0.142 3.858 5 N -0.417 5.417 6 N -0.490 5.490 7 H 0.436 0.564 8 C 0.233 3.767 9 C -0.084 4.084 10 C 0.446 3.554 11 O -0.578 6.578 12 N -0.441 5.441 13 C 0.108 3.892 14 C -0.309 4.309 15 H 0.098 0.902 16 C 0.033 3.967 17 N -0.880 5.880 18 Si 0.926 3.074 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.272 1.272 22 C -0.348 4.348 23 C 0.537 3.463 24 O -0.567 6.567 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.026 0.974 39 H 0.269 0.731 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.269 -2.359 7.763 14.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.138 4.138 3 C -0.208 4.208 4 C 0.020 3.980 5 N -0.239 5.239 6 N -0.212 5.212 7 H 0.280 0.720 8 C 0.115 3.885 9 C -0.126 4.126 10 C 0.232 3.768 11 O -0.462 6.462 12 N -0.160 5.160 13 C -0.036 4.036 14 C -0.437 4.437 15 H 0.115 0.885 16 C -0.171 4.171 17 N -0.519 5.519 18 Si 0.753 3.247 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.378 4.378 23 C 0.336 3.664 24 O -0.448 6.448 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.045 0.955 39 H 0.079 0.921 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.928 -2.709 7.001 14.949 hybrid contribution 0.441 1.269 -0.101 1.348 sum -12.487 -1.439 6.900 14.339 Atomic orbital electron populations 1.21757 0.94197 1.01984 1.02092 1.21609 0.96000 0.97228 0.98996 1.21875 1.02423 0.94958 1.01561 1.21731 0.75206 1.02478 0.98536 1.48387 1.02073 1.22081 1.51391 1.43831 0.99801 1.25135 1.52395 0.71954 1.20315 0.84337 0.91810 0.92018 1.20563 0.92391 0.99346 1.00297 1.19663 0.85428 0.84177 0.87504 1.90590 1.53181 1.70110 1.32304 1.43540 1.20241 1.30300 1.21942 1.21544 0.93325 1.02992 0.85762 1.19582 0.93084 1.12078 1.18912 0.88459 1.25345 0.95223 0.99075 0.97421 1.69969 1.00320 1.36920 1.44663 0.85994 0.77206 0.81372 0.80127 1.19924 1.20880 1.19720 1.21581 0.97111 1.04141 1.15008 1.16964 0.87815 0.81559 0.80013 1.90803 1.77194 1.31481 1.45346 0.92608 0.92118 0.92365 0.90060 0.91567 0.92408 0.93087 0.88520 0.90043 0.86554 0.88619 0.92667 0.90557 0.95512 0.92060 0.82607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.19 37.16 0.34 -0.89 16 2 C -0.12 -1.37 3.13 -90.62 -0.28 -1.65 16 3 C -0.15 -1.82 9.08 37.16 0.34 -1.48 16 4 C 0.14 1.61 5.75 -4.04 -0.02 1.59 16 5 N -0.42 -6.23 3.14 -63.24 -0.20 -6.43 16 6 N -0.49 -6.81 6.74 33.67 0.23 -6.59 16 7 H 0.44 4.76 8.96 -182.59 -1.64 3.12 16 8 C 0.23 3.76 5.70 -81.68 -0.47 3.30 16 9 C -0.08 -1.31 4.84 -29.03 -0.14 -1.45 16 10 C 0.45 9.82 7.62 -10.98 -0.08 9.73 16 11 O -0.58 -15.01 15.75 5.55 0.09 -14.92 16 12 N -0.44 -10.43 3.01 -122.20 -0.37 -10.79 16 13 C 0.11 2.15 8.44 59.84 0.51 2.66 16 14 C -0.31 -8.20 9.24 -14.93 -0.14 -8.34 16 15 H 0.10 2.72 7.45 -52.49 -0.39 2.33 16 16 C 0.03 0.84 5.04 -17.47 -0.09 0.75 16 17 N -0.88 -22.49 10.83 55.50 0.60 -21.88 16 18 Si 0.93 20.08 29.57 -169.99 -5.03 15.05 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 C -0.35 -6.29 10.73 -39.56 -0.42 -6.72 16 23 C 0.54 10.16 7.95 -14.99 -0.12 10.04 16 24 O -0.57 -12.38 17.92 5.12 0.09 -12.29 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.01 7.23 -51.93 -0.38 0.64 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.12 1.64 8.11 -51.93 -0.42 1.22 16 35 H 0.10 1.17 7.41 -51.93 -0.38 0.78 16 36 H 0.05 1.14 7.83 -51.93 -0.41 0.73 16 37 H 0.08 1.65 6.80 -51.93 -0.35 1.29 16 38 H 0.03 0.41 6.61 -51.93 -0.34 0.07 16 39 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 40 H 0.16 2.72 8.06 -52.48 -0.42 2.30 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -33.70 336.89 -7.34 -41.04 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.25 Total: 4.21 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -0.58 Total: 7.54 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.26 Total: -45.70 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: 0.18 Total: -27.21 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.70 -7.34 -41.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931238949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.418 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds