Wall clock time and date at job start Tue Mar 31 2020 05:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47122 * 2 1 4 4 C 1.52997 * 109.47006 * 119.99686 * 2 1 3 5 5 N 1.46503 * 109.47168 * 175.00387 * 4 2 1 6 6 N 1.40120 * 126.16479 * 95.27916 * 5 4 2 7 7 H 0.96993 * 125.91588 * 0.04301 * 6 5 4 8 8 C 1.36602 * 108.17524 * 180.16412 * 6 5 4 9 9 C 1.50703 * 125.77476 * 179.84107 * 8 6 5 10 10 C 1.50697 * 109.47010 * 274.72143 * 9 8 6 11 11 O 1.21293 * 120.00417 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99909 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99829 * 359.97438 * 12 10 9 14 14 C 1.37096 * 119.99535 * 179.97438 * 12 10 9 15 15 H 1.07996 * 120.00500 * 24.39547 * 14 12 10 16 16 C 1.38955 * 119.99464 * 204.39355 * 14 12 10 17 17 N 1.31406 * 119.99952 * 12.64062 * 16 14 12 18 18 Si 1.86803 * 119.99962 * 192.64263 * 16 14 12 19 19 H 1.48505 * 109.46891 * 59.99576 * 18 16 14 20 20 H 1.48496 * 109.47369 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47072 * 300.00172 * 18 16 14 22 22 C 1.34825 * 108.45391 * 359.58071 * 8 6 5 23 23 C 1.34872 * 126.16121 * 274.97825 * 5 4 2 24 24 O 1.21780 * 126.19394 * 359.97438 * 23 5 4 25 25 H 1.08995 * 109.46798 * 300.00226 * 1 2 3 26 26 H 1.08999 * 109.46760 * 60.00484 * 1 2 3 27 27 H 1.08997 * 109.46614 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47501 * 239.99895 * 2 1 3 29 29 H 1.09004 * 109.47575 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.46954 * 299.99872 * 3 2 1 31 31 H 1.09000 * 109.47532 * 59.99706 * 3 2 1 32 32 H 1.08993 * 109.47120 * 55.00062 * 4 2 1 33 33 H 1.09005 * 109.47259 * 294.99888 * 4 2 1 34 34 H 1.09000 * 109.47577 * 154.71823 * 9 8 6 35 35 H 1.09007 * 109.47045 * 34.71475 * 9 8 6 36 36 H 1.08994 * 109.47036 * 85.86724 * 13 12 10 37 37 H 1.08999 * 109.46664 * 205.86415 * 13 12 10 38 38 H 1.09001 * 109.47464 * 325.86104 * 13 12 10 39 39 H 0.97006 * 119.99946 * 180.02562 * 17 16 14 40 40 H 1.08003 * 125.95950 * 180.28946 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8262 1.1907 6 7 4.4168 0.0532 1.7819 7 1 4.1949 0.8402 2.3037 8 6 5.6771 -0.3880 1.4940 9 6 6.9615 0.2667 1.9331 10 6 7.3329 1.3507 0.9544 11 8 6.6246 1.5699 -0.0055 12 7 8.4522 2.0769 1.1458 13 6 9.3074 1.8126 2.3055 14 6 8.7903 3.0627 0.2551 15 1 8.0264 3.5310 -0.3478 16 6 10.1159 3.4593 0.1280 17 7 11.0725 2.7361 0.6653 18 14 10.5382 5.0207 -0.8065 19 1 9.8773 6.1808 -0.1564 20 1 12.0097 5.2206 -0.7971 21 1 10.0632 4.9022 -2.2085 22 6 5.5776 -1.5115 0.7554 23 6 4.2041 -1.7901 0.5627 24 8 3.7411 -2.7304 -0.0576 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8935 -0.5138 -0.8899 29 1 3.1301 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6054 -1.7197 1.2952 33 1 1.7517 -0.1582 2.1370 34 1 7.7559 -0.4788 1.9683 35 1 6.8274 0.7018 2.9236 36 1 10.0084 1.0133 2.0654 37 1 9.8605 2.7160 2.5624 38 1 8.6895 1.5119 3.1517 39 1 11.9979 3.0132 0.5770 40 1 6.4026 -2.0970 0.3773 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931238949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:49 Heat of formation + Delta-G solvation = -17.517819 kcal Electronic energy + Delta-G solvation = -22379.016999 eV Core-core repulsion = 19002.475727 eV Total energy + Delta-G solvation = -3376.541272 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.61582 -40.29000 -38.11590 -37.49733 -36.59940 -34.02393 -33.45945 -30.94527 -30.63349 -28.14701 -28.06495 -26.89399 -25.87918 -22.39867 -22.20797 -21.10477 -20.61119 -18.96876 -18.82403 -17.91641 -16.98726 -16.77057 -16.52695 -16.27267 -16.11625 -15.76293 -15.44657 -14.88865 -14.59464 -14.39853 -14.12144 -13.90104 -13.74641 -13.35337 -13.24745 -13.16490 -13.06378 -12.94154 -12.83350 -12.61140 -12.37744 -12.24363 -12.13520 -11.99624 -11.78321 -10.96699 -10.87962 -10.47678 -10.04989 -9.62288 -8.89320 -8.31746 -5.95991 0.54472 0.80125 1.40143 1.43439 1.52440 2.04443 2.20239 2.32484 2.82936 3.11859 3.15670 3.57480 3.69130 3.78667 4.02569 4.07709 4.21974 4.25994 4.42204 4.54334 4.58379 4.60967 4.70978 4.76387 4.85617 4.93599 4.96250 5.03291 5.12944 5.15769 5.27294 5.32013 5.39311 5.48064 5.49027 6.12290 6.17172 6.50603 6.61719 7.20041 7.25906 7.50443 8.05053 8.70402 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024456 B = 0.004071 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.641386 B = 6875.875406 C = 7522.343108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.116 4.116 3 C -0.146 4.146 4 C 0.133 3.867 5 N -0.408 5.408 6 N -0.468 5.468 7 H 0.453 0.547 8 C 0.242 3.758 9 C -0.069 4.069 10 C 0.442 3.558 11 O -0.626 6.626 12 N -0.458 5.458 13 C 0.113 3.887 14 C -0.342 4.342 15 H 0.069 0.931 16 C 0.001 3.999 17 N -0.893 5.893 18 Si 0.982 3.018 19 H -0.265 1.265 20 H -0.272 1.272 21 H -0.282 1.282 22 C -0.380 4.380 23 C 0.517 3.483 24 O -0.612 6.612 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.041 0.959 29 H 0.029 0.971 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.124 0.876 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.273 0.727 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.119 -1.420 10.171 16.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 C -0.203 4.203 4 C 0.014 3.986 5 N -0.228 5.228 6 N -0.190 5.190 7 H 0.301 0.699 8 C 0.121 3.879 9 C -0.110 4.110 10 C 0.231 3.769 11 O -0.513 6.513 12 N -0.177 5.177 13 C -0.030 4.030 14 C -0.470 4.470 15 H 0.087 0.913 16 C -0.201 4.201 17 N -0.532 5.532 18 Si 0.806 3.194 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.208 1.208 22 C -0.410 4.410 23 C 0.317 3.683 24 O -0.498 6.498 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.142 0.858 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.798 -1.727 9.475 16.827 hybrid contribution 0.664 1.005 -0.846 1.472 sum -13.134 -0.722 8.629 15.731 Atomic orbital electron populations 1.21710 0.91427 1.02778 1.03369 1.21555 0.98205 0.96352 0.97431 1.21833 0.99929 0.95611 1.02970 1.22127 0.72809 1.03508 1.00144 1.48446 1.03349 1.21107 1.49904 1.43895 0.99151 1.24900 1.51056 0.69850 1.20315 0.85330 0.91049 0.91184 1.20514 0.92445 0.97617 1.00421 1.20621 0.84080 0.84405 0.87841 1.90570 1.54470 1.71568 1.34720 1.43780 1.21132 1.30208 1.22578 1.21563 0.93613 1.01696 0.86100 1.19510 0.93102 1.14049 1.20367 0.91265 1.25978 0.94769 1.01353 0.98001 1.70035 1.00497 1.37681 1.44957 0.85166 0.77414 0.78491 0.78303 1.19033 1.19664 1.20768 1.21683 0.97048 1.05680 1.16610 1.17129 0.88559 0.82078 0.80577 1.90753 1.77987 1.33469 1.47556 0.90156 0.92003 0.91870 0.94012 0.95220 0.92565 0.90183 0.88212 0.85824 0.84327 0.83719 0.93685 0.92576 0.90078 0.91742 0.83058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.19 71.98 0.66 -1.36 16 2 C -0.12 -2.56 3.13 -10.79 -0.03 -2.60 16 3 C -0.15 -3.35 9.08 71.98 0.65 -2.70 16 4 C 0.13 2.78 5.75 86.38 0.50 3.27 16 5 N -0.41 -11.80 3.14 -472.12 -1.48 -13.28 16 6 N -0.47 -12.00 6.74 -47.38 -0.32 -12.32 16 7 H 0.45 8.34 8.96 -213.32 -1.91 6.43 16 8 C 0.24 7.42 5.70 41.03 0.23 7.65 16 9 C -0.07 -1.94 4.84 29.10 0.14 -1.80 16 10 C 0.44 19.06 7.62 87.66 0.67 19.72 16 11 O -0.63 -33.01 15.75 -3.07 -0.05 -33.06 16 12 N -0.46 -21.36 3.01 -658.90 -1.98 -23.34 16 13 C 0.11 4.29 8.44 127.77 1.08 5.37 16 14 C -0.34 -18.43 9.24 84.04 0.78 -17.66 16 15 H 0.07 4.03 7.45 -2.91 -0.02 4.01 16 16 C 0.00 0.07 5.04 84.93 0.43 0.49 16 17 N -0.89 -45.32 10.83 21.66 0.23 -45.08 16 18 Si 0.98 41.17 29.57 68.60 2.03 43.20 16 19 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 22 C -0.38 -13.83 10.73 22.28 0.24 -13.60 16 23 C 0.52 19.93 7.95 85.02 0.68 20.60 16 24 O -0.61 -27.88 17.92 -4.60 -0.08 -27.96 16 25 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.03 0.89 7.23 -2.39 -0.02 0.87 16 30 H 0.06 1.28 8.14 -2.38 -0.02 1.27 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.14 3.41 8.11 -2.39 -0.02 3.39 16 35 H 0.15 2.71 7.41 -2.38 -0.02 2.69 16 36 H 0.04 1.78 7.83 -2.39 -0.02 1.76 16 37 H 0.06 2.34 6.80 -2.39 -0.02 2.33 16 38 H 0.08 2.14 6.61 -2.39 -0.02 2.13 16 39 H 0.27 13.10 8.31 -92.70 -0.77 12.33 16 40 H 0.15 5.46 8.06 -2.91 -0.02 5.44 16 Total: -1.00 -78.09 336.89 3.50 -74.59 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -0.87 Total: 19.85 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 6.02 Total: 17.41 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -3.55 Total: -94.03 kcal Atomic # 8 Polarization: -60.89 SS G_CDS: -0.13 Total: -61.02 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -78.09 3.50 -74.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931238949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.074 kcal (2) G-P(sol) polarization free energy of solvation -78.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds