Wall clock time and date at job start Tue Mar 31 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45197 * 109.46535 * 2 1 4 4 C 1.34735 * 117.00013 * 179.97438 * 3 2 1 5 5 O 1.21495 * 119.99575 * 0.02562 * 4 3 2 6 6 C 1.47578 * 120.00302 * 180.02562 * 4 3 2 7 7 C 1.41545 * 126.52359 * 180.02562 * 6 4 3 8 8 C 1.35345 * 105.50387 * 179.97438 * 7 6 4 9 9 C 1.50703 * 126.38227 * 179.73404 * 8 7 6 10 10 N 1.46901 * 109.46897 * 95.00423 * 9 8 7 11 11 C 1.46903 * 111.00174 * 66.04883 * 10 9 8 12 12 C 1.46896 * 111.00000 * 190.00112 * 10 9 8 13 13 H 1.09001 * 109.47356 * 299.99797 * 12 10 9 14 14 C 1.52999 * 109.46969 * 59.99921 * 12 10 9 15 15 C 1.50706 * 109.47279 * 179.97438 * 12 10 9 16 16 H 1.07995 * 119.99444 * 359.97438 * 15 12 10 17 17 C 1.37873 * 119.99940 * 180.02562 * 15 12 10 18 18 N 1.31514 * 120.00161 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 119.99815 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.47104 * 59.99738 * 19 17 15 21 21 H 1.48500 * 109.47432 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47310 * 300.00181 * 19 17 15 23 23 N 1.35049 * 107.23949 * 0.02562 * 8 7 6 24 24 H 0.96999 * 124.87766 * 179.97438 * 23 8 7 25 25 N 1.28463 * 110.24468 * 359.97438 * 23 8 7 26 26 H 1.08993 * 109.47304 * 60.00071 * 1 2 3 27 27 H 1.08997 * 109.46709 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47183 * 299.99628 * 1 2 3 29 29 H 1.08997 * 109.47183 * 240.00372 * 2 1 3 30 30 H 1.08993 * 109.47304 * 119.99929 * 2 1 3 31 31 H 1.07997 * 127.25009 * 359.97438 * 7 6 4 32 32 H 1.09001 * 109.47480 * 215.00238 * 9 8 7 33 33 H 1.08993 * 109.46982 * 335.00392 * 9 8 7 34 34 H 1.08998 * 109.47168 * 59.99629 * 11 10 9 35 35 H 1.08993 * 109.47422 * 180.02562 * 11 10 9 36 36 H 1.09010 * 109.46671 * 300.00211 * 11 10 9 37 37 H 1.08999 * 109.47723 * 299.99866 * 14 12 10 38 38 H 1.09006 * 109.47283 * 60.00484 * 14 12 10 39 39 H 1.09001 * 109.47169 * 179.97438 * 14 12 10 40 40 H 0.96998 * 119.99873 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3496 1.5457 0.0005 5 8 4.0898 0.5822 0.0005 6 6 3.9136 2.9094 0.0011 7 6 5.2867 3.2532 0.0012 8 6 5.3209 4.6062 0.0013 9 6 6.5564 5.4691 0.0070 10 7 6.8951 5.8484 -1.3712 11 6 5.8623 6.7207 -1.9461 12 6 8.2167 6.4868 -1.4318 13 1 8.2156 7.3840 -0.8127 14 6 9.2778 5.5126 -0.9162 15 6 8.5291 6.8605 -2.8580 16 1 7.8173 6.6449 -3.6410 17 6 9.7242 7.4767 -3.1632 18 7 10.5912 7.7388 -2.2097 19 14 10.1117 7.9392 -4.9310 20 1 9.0822 8.8848 -5.4324 21 1 11.4477 8.5847 -4.9923 22 1 10.1130 6.7165 -5.7737 23 7 4.0416 5.0389 0.0018 24 1 3.7712 5.9704 0.0023 25 7 3.2344 4.0396 0.0015 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 6.1296 2.5780 0.0013 32 1 6.3695 6.3674 0.5955 33 1 7.3855 4.9137 0.4452 34 1 5.7759 7.6262 -1.3456 35 1 6.1377 6.9860 -2.9668 36 1 4.9065 6.1965 -1.9527 37 1 9.0521 5.2419 0.1152 38 1 9.2789 4.6155 -1.5354 39 1 10.2585 5.9861 -0.9616 40 1 11.4318 8.1727 -2.4244 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118265147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:52 Heat of formation + Delta-G solvation = -23.130906 kcal Electronic energy + Delta-G solvation = -21733.655009 eV Core-core repulsion = 18356.870335 eV Total energy + Delta-G solvation = -3376.784673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.83753 -41.26110 -38.79394 -37.69487 -35.00691 -33.33869 -32.68973 -32.31770 -30.88830 -28.52022 -26.58057 -26.30016 -24.94522 -23.63976 -22.39427 -21.58758 -21.30321 -18.95306 -18.59213 -17.94437 -17.73607 -17.42813 -17.15244 -16.61840 -15.94100 -15.46247 -15.22911 -14.93077 -14.74527 -14.60893 -14.18148 -14.00100 -13.62351 -13.32746 -12.95534 -12.93911 -12.86821 -12.67910 -12.58940 -12.51105 -12.13719 -12.04132 -11.95357 -11.88845 -11.71261 -11.53606 -10.89964 -10.59376 -10.50436 -10.09098 -8.97567 -8.10058 -6.20906 0.17391 0.95590 1.38695 1.43936 1.45752 1.52575 1.98126 2.02669 2.43714 3.18763 3.27330 3.41288 3.65574 3.95163 4.03248 4.08957 4.24417 4.37391 4.40744 4.48266 4.62127 4.67418 4.81561 4.87001 4.94360 5.00066 5.03964 5.08718 5.11548 5.23074 5.27498 5.37101 5.52522 5.72468 5.80643 5.91573 6.28933 6.33602 6.52699 6.67580 6.81038 6.92127 7.47945 8.95195 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032656 B = 0.003131 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.220541 B = 8940.095412 C = 8991.461784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.350 6.350 4 C 0.562 3.438 5 O -0.523 6.523 6 C -0.026 4.026 7 C -0.169 4.169 8 C 0.049 3.951 9 C 0.116 3.884 10 N -0.542 5.542 11 C 0.034 3.966 12 C 0.219 3.781 13 H -0.024 1.024 14 C -0.127 4.127 15 C -0.520 4.520 16 H 0.058 0.942 17 C 0.015 3.985 18 N -0.917 5.917 19 Si 0.954 3.046 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.275 1.275 23 N -0.356 5.356 24 H 0.459 0.541 25 N -0.235 5.235 26 H 0.066 0.934 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.167 0.833 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.024 0.976 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.039 0.961 38 H 0.030 0.970 39 H 0.060 0.940 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.947 -8.682 6.450 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.266 6.266 4 C 0.405 3.595 5 O -0.411 6.411 6 C -0.183 4.183 7 C -0.197 4.197 8 C -0.077 4.077 9 C -0.014 4.014 10 N -0.267 5.267 11 C -0.114 4.114 12 C 0.113 3.887 13 H -0.007 1.007 14 C -0.185 4.185 15 C -0.558 4.558 16 H 0.076 0.924 17 C -0.184 4.184 18 N -0.557 5.557 19 Si 0.780 3.220 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.201 1.201 23 N -0.075 5.075 24 H 0.307 0.693 25 N -0.074 5.074 26 H 0.085 0.915 27 H 0.123 0.877 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.184 0.816 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.643 -8.996 6.196 20.751 hybrid contribution 1.277 1.115 -0.499 1.767 sum -16.366 -7.882 5.697 19.037 Atomic orbital electron populations 1.21828 0.90207 1.04533 1.03647 1.23433 0.97228 0.78514 1.03080 1.86637 1.22240 1.34283 1.83427 1.19579 0.81002 0.87012 0.71918 1.90839 1.61227 1.41624 1.47390 1.20738 0.92375 0.90363 1.14806 1.21567 0.95733 0.94336 1.08028 1.21334 0.87162 0.94321 1.04857 1.20712 0.92313 0.97075 0.91261 1.62058 1.03529 1.44100 1.17060 1.22277 0.94072 0.94276 1.00784 1.19044 0.84261 0.90241 0.95166 1.00688 1.21726 1.01335 0.98309 0.97120 1.21388 1.02719 1.37890 0.93837 0.92407 1.25618 0.96144 0.95888 1.00770 1.69987 1.09251 1.42994 1.33445 0.85668 0.77208 0.78368 0.80706 1.19723 1.21105 1.20086 1.43540 1.03274 1.09456 1.51242 0.69270 1.73609 1.21734 0.94584 1.17435 0.91522 0.87673 0.91300 0.90938 0.90630 0.81587 0.92612 0.87573 0.95797 0.92033 0.91946 0.94221 0.95100 0.92115 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.29 71.98 0.74 -0.99 16 2 C 0.05 0.93 6.20 71.98 0.45 1.38 16 3 O -0.35 -9.04 10.23 -56.45 -0.58 -9.62 16 4 C 0.56 16.86 7.97 70.29 0.56 17.42 16 5 O -0.52 -17.48 16.72 19.85 0.33 -17.15 16 6 C -0.03 -0.78 7.17 42.42 0.30 -0.48 16 7 C -0.17 -5.06 10.73 22.42 0.24 -4.81 16 8 C 0.05 1.37 5.93 41.40 0.25 1.61 16 9 C 0.12 3.52 5.33 85.56 0.46 3.97 16 10 N -0.54 -20.89 4.61 -906.03 -4.18 -25.07 16 11 C 0.03 1.18 9.08 127.69 1.16 2.34 16 12 C 0.22 10.33 2.06 44.17 0.09 10.42 16 13 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 14 C -0.13 -5.80 8.76 71.98 0.63 -5.17 16 15 C -0.52 -27.27 7.88 25.60 0.20 -27.07 16 16 H 0.06 3.04 6.41 -2.91 -0.02 3.02 16 17 C 0.01 0.79 5.30 84.65 0.45 1.24 16 18 N -0.92 -50.85 11.32 21.45 0.24 -50.60 16 19 Si 0.95 42.59 29.54 68.60 2.03 44.61 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 23 N -0.36 -8.58 5.95 -47.93 -0.29 -8.86 16 24 H 0.46 8.07 8.77 -220.00 -1.93 6.14 16 25 N -0.23 -6.51 12.24 -48.22 -0.59 -7.10 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.17 4.86 8.06 -2.91 -0.02 4.84 16 32 H 0.06 1.53 8.12 -2.39 -0.02 1.51 16 33 H 0.11 3.24 5.83 -2.39 -0.01 3.23 16 34 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 2.40 6.10 -2.39 -0.01 2.39 16 36 H 0.06 1.81 6.42 -2.38 -0.02 1.79 16 37 H 0.04 1.53 6.20 -2.39 -0.01 1.51 16 38 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 40 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -63.54 334.03 1.62 -61.92 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -0.87 Total: 12.02 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 5.52 Total: -0.14 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -4.81 Total: -91.64 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.25 Total: -26.77 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -63.54 1.62 -61.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118265147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.789 kcal (2) G-P(sol) polarization free energy of solvation -63.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds