Wall clock time and date at job start Tue Mar 31 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45201 * 109.46840 * 2 1 4 4 C 1.34228 * 116.99580 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99684 * 179.97438 * 4 3 2 7 7 N 1.46897 * 109.47087 * 174.30253 * 6 4 3 8 8 C 1.46903 * 111.00149 * 287.79348 * 7 6 4 9 9 C 1.50700 * 109.47057 * 294.70469 * 8 7 6 10 10 H 1.08004 * 119.99726 * 5.34985 * 9 8 7 11 11 C 1.37874 * 119.99802 * 185.35139 * 9 8 7 12 12 N 1.31513 * 120.00396 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99877 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46759 * 60.00212 * 13 11 9 15 15 H 1.48500 * 109.47383 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47204 * 300.00335 * 13 11 9 17 17 C 1.46900 * 110.99980 * 163.83921 * 7 6 4 18 18 C 1.50707 * 109.47008 * 190.00004 * 17 7 6 19 19 N 1.30498 * 125.65084 * 274.69008 * 18 17 7 20 20 C 1.34131 * 109.25706 * 180.26742 * 19 18 17 21 21 C 1.34676 * 108.01914 * 359.97438 * 20 19 18 22 22 C 1.50702 * 126.58813 * 179.97438 * 21 20 19 23 23 N 1.35043 * 125.64848 * 94.99787 * 18 17 7 24 24 H 0.97005 * 126.40071 * 359.75661 * 23 18 17 25 25 H 1.09001 * 109.47285 * 300.00068 * 1 2 3 26 26 H 1.08998 * 109.46975 * 60.00345 * 1 2 3 27 27 H 1.09001 * 109.46851 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47285 * 239.99932 * 2 1 3 29 29 H 1.08998 * 109.46975 * 119.99655 * 2 1 3 30 30 H 1.08999 * 109.46905 * 54.30365 * 6 4 3 31 31 H 1.08998 * 109.47008 * 294.29976 * 6 4 3 32 32 H 1.09001 * 109.47296 * 54.70563 * 8 7 6 33 33 H 1.09005 * 109.47192 * 174.70167 * 8 7 6 34 34 H 0.96998 * 120.00099 * 179.97438 * 12 11 9 35 35 H 1.08999 * 109.47175 * 70.00119 * 17 7 6 36 36 H 1.09000 * 109.47147 * 309.99474 * 17 7 6 37 37 H 1.07996 * 125.99067 * 180.02562 * 20 19 18 38 38 H 1.08998 * 109.46882 * 270.04070 * 22 21 20 39 39 H 1.08994 * 109.47040 * 30.04438 * 22 21 20 40 40 H 1.09002 * 109.46471 * 150.04547 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 7 5.3814 2.8633 0.1358 8 6 5.7630 2.4684 1.4983 9 6 5.3503 3.5458 2.4678 10 1 4.7784 4.3939 2.1212 11 6 5.7030 3.4489 3.7971 12 7 6.3991 2.4160 4.2193 13 14 5.1921 4.7848 4.9987 14 1 3.7107 4.8850 5.0269 15 1 5.6918 4.4475 6.3559 16 1 5.7680 6.0843 4.5685 17 6 6.0106 4.1367 -0.2389 18 6 7.5040 3.9532 -0.3238 19 7 8.3383 4.0335 0.6765 20 6 9.5853 3.8209 0.2306 21 6 9.5213 3.6000 -1.0963 22 6 10.6804 3.3160 -2.0167 23 7 8.2013 3.6843 -1.4486 24 1 7.8351 3.5718 -2.3398 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.5057 3.5026 0.8334 31 1 3.6684 3.4346 -0.9378 32 1 5.2646 1.5347 1.7591 33 1 6.8431 2.3297 1.5474 34 1 6.6475 2.3481 5.1544 35 1 5.7794 4.8913 0.5129 36 1 5.6286 4.4596 -1.2074 37 1 10.4832 3.8253 0.8307 38 1 11.0697 4.2547 -2.4109 39 1 11.4657 2.8007 -1.4636 40 1 10.3441 2.6873 -2.8411 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138938282.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:19 Heat of formation + Delta-G solvation = -46.305957 kcal Electronic energy + Delta-G solvation = -22404.635863 eV Core-core repulsion = 19026.846243 eV Total energy + Delta-G solvation = -3377.789619 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.87232 -41.39492 -38.58788 -37.21559 -34.51188 -33.59776 -32.83990 -32.51650 -29.96840 -29.46102 -26.99685 -25.73347 -24.31337 -23.06440 -21.87656 -21.58678 -21.09143 -18.99653 -18.37155 -17.98766 -17.65690 -16.99857 -16.67440 -16.48696 -15.76919 -15.48231 -15.04746 -14.90942 -14.63725 -14.36089 -14.10124 -13.66537 -13.56193 -13.47042 -13.19948 -13.14365 -12.94477 -12.78321 -12.66885 -12.53079 -12.45283 -12.32986 -11.95135 -11.67861 -11.46182 -11.29829 -10.79277 -10.59259 -10.45574 -9.22723 -8.93561 -8.05057 -6.21021 1.14322 1.34985 1.38905 1.43604 1.48832 1.72115 2.31110 2.37088 2.44410 3.24205 3.42755 3.81663 3.91782 4.02087 4.13156 4.15195 4.25290 4.34127 4.37398 4.42920 4.54933 4.65931 4.78981 4.85333 4.87446 4.95293 5.04215 5.14077 5.16827 5.25884 5.44729 5.46814 5.54386 5.86250 5.93986 5.99435 6.21020 6.32392 6.71850 6.94360 6.95845 7.43712 7.48471 9.00551 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011128 B = 0.006400 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.543700 B = 4374.264199 C = 6328.978191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.363 6.363 4 C 0.465 3.535 5 O -0.530 6.530 6 C 0.067 3.933 7 N -0.532 5.532 8 C 0.212 3.788 9 C -0.541 4.541 10 H 0.067 0.933 11 C 0.013 3.987 12 N -0.929 5.929 13 Si 0.954 3.046 14 H -0.263 1.263 15 H -0.290 1.290 16 H -0.271 1.271 17 C 0.146 3.854 18 C 0.212 3.788 19 N -0.511 5.511 20 C -0.074 4.074 21 C -0.018 4.018 22 C -0.066 4.066 23 N -0.548 5.548 24 H 0.430 0.570 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.150 0.850 32 H -0.013 1.013 33 H 0.013 0.987 34 H 0.258 0.742 35 H 0.062 0.938 36 H 0.123 0.877 37 H 0.166 0.834 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 2.171 -16.222 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 O -0.280 6.280 4 C 0.309 3.691 5 O -0.418 6.418 6 C -0.062 4.062 7 N -0.257 5.257 8 C 0.086 3.914 9 C -0.580 4.580 10 H 0.085 0.915 11 C -0.186 4.186 12 N -0.569 5.569 13 Si 0.779 3.221 14 H -0.188 1.188 15 H -0.216 1.216 16 H -0.196 1.196 17 C 0.017 3.983 18 C -0.053 4.053 19 N -0.230 5.230 20 C -0.222 4.222 21 C -0.135 4.135 22 C -0.124 4.124 23 N -0.154 5.154 24 H 0.270 0.730 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.119 0.881 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.168 0.832 32 H 0.005 0.995 33 H 0.031 0.969 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.141 0.859 37 H 0.183 0.817 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.058 1.577 -15.548 16.146 hybrid contribution 0.036 0.314 0.854 0.911 sum -4.022 1.890 -14.694 15.351 Atomic orbital electron populations 1.21799 0.89755 1.04367 1.03838 1.23235 0.97444 0.79628 1.01861 1.86473 1.23922 1.33389 1.84249 1.24083 0.80400 0.93308 0.71345 1.90626 1.61154 1.44270 1.45754 1.21587 0.89069 0.89594 1.05956 1.62070 1.06027 1.29383 1.28244 1.19297 0.95606 0.93644 0.82869 1.21795 1.34447 1.07588 0.94129 0.91465 1.25756 0.94869 0.97498 1.00496 1.70118 1.39448 1.31436 1.15880 0.85682 0.78890 0.79724 0.77780 1.18771 1.21627 1.19637 1.20327 0.84319 0.91193 1.02411 1.23024 0.95938 1.04551 0.81758 1.70373 1.01702 1.19909 1.31049 1.22458 0.95826 1.10453 0.93482 1.21771 0.86187 1.08877 0.96646 1.20298 0.92071 1.03106 0.96911 1.43053 1.06595 1.54487 1.11256 0.72952 0.91712 0.90410 0.88142 0.91111 0.93163 0.89849 0.83219 0.99536 0.96857 0.93314 0.92010 0.85947 0.81654 0.89211 0.89390 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 10.29 71.98 0.74 -1.81 16 2 C 0.05 1.42 6.19 71.98 0.45 1.86 16 3 O -0.36 -11.93 10.22 -51.40 -0.53 -12.45 16 4 C 0.47 18.12 7.53 71.24 0.54 18.66 16 5 O -0.53 -24.91 14.91 21.97 0.33 -24.59 16 6 C 0.07 2.34 5.43 85.56 0.46 2.80 16 7 N -0.53 -22.62 4.29 -909.92 -3.91 -26.52 16 8 C 0.21 11.87 4.59 85.56 0.39 12.26 16 9 C -0.54 -30.51 7.33 25.60 0.19 -30.32 16 10 H 0.07 3.52 5.97 -2.91 -0.02 3.50 16 11 C 0.01 0.75 5.46 84.65 0.46 1.21 16 12 N -0.93 -59.72 13.29 21.45 0.28 -59.43 16 13 Si 0.95 46.04 29.54 68.60 2.03 48.06 16 14 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 15 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 16 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 17 C 0.15 5.29 5.36 85.56 0.46 5.75 16 18 C 0.21 8.34 6.90 138.13 0.95 9.29 16 19 N -0.51 -24.07 10.26 -188.12 -1.93 -26.00 16 20 C -0.07 -2.88 11.79 83.52 0.98 -1.90 16 21 C -0.02 -0.52 7.24 40.95 0.30 -0.23 16 22 C -0.07 -1.19 10.44 71.24 0.74 -0.44 16 23 N -0.55 -16.35 6.15 -174.59 -1.07 -17.42 16 24 H 0.43 9.12 8.96 -92.70 -0.83 8.29 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 29 H 0.05 1.54 8.13 -2.39 -0.02 1.52 16 30 H 0.08 3.11 6.46 -2.39 -0.02 3.09 16 31 H 0.15 3.58 7.80 -2.39 -0.02 3.57 16 32 H -0.01 -0.86 6.58 -2.39 -0.02 -0.87 16 33 H 0.01 0.85 6.61 -2.38 -0.02 0.84 16 34 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 35 H 0.06 2.50 6.31 -2.39 -0.02 2.49 16 36 H 0.12 3.01 7.86 -2.39 -0.02 2.99 16 37 H 0.17 5.81 8.06 -2.91 -0.02 5.78 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -84.26 336.56 2.10 -82.16 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.22 Total: 19.05 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 6.67 Total: 17.14 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -6.62 Total: -129.38 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.20 Total: -37.04 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -84.26 2.10 -82.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138938282.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.857 kcal (2) G-P(sol) polarization free energy of solvation -84.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds