Wall clock time and date at job start Tue Mar 31 2020 05:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52994 * 109.47417 * 2 1 4 4 C 1.53003 * 109.47158 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.46841 * 179.90306 * 4 3 2 6 6 C 1.46902 * 111.00340 * 288.81041 * 5 4 3 7 7 C 1.50696 * 109.47358 * 160.33465 * 6 5 4 8 8 H 1.08006 * 120.00104 * 4.64098 * 7 6 5 9 9 C 1.37878 * 120.00417 * 184.63313 * 7 6 5 10 10 N 1.31516 * 119.99532 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00270 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47354 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47123 * 120.00109 * 11 9 7 14 14 H 1.48501 * 109.47531 * 240.00139 * 11 9 7 15 15 C 1.46906 * 110.99713 * 164.86278 * 5 4 3 16 16 C 1.50699 * 109.47127 * 293.95385 * 15 5 4 17 17 C 1.39013 * 120.84711 * 269.72167 * 16 15 5 18 18 O 1.35543 * 120.47401 * 359.97438 * 17 16 15 19 19 N 1.32969 * 119.04842 * 179.76671 * 17 16 15 20 20 C 1.31758 * 120.86234 * 0.51675 * 19 17 16 21 21 N 1.31759 * 121.87396 * 359.73523 * 20 19 17 22 22 C 1.32972 * 120.86092 * 359.97438 * 21 20 19 23 23 O 1.35537 * 120.47361 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47290 * 300.00051 * 1 2 3 25 25 H 1.09000 * 109.47161 * 59.99822 * 1 2 3 26 26 H 1.09002 * 109.47639 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47290 * 239.99949 * 2 1 3 28 28 H 1.09000 * 109.47161 * 120.00177 * 2 1 3 29 29 H 1.09002 * 109.47023 * 60.00274 * 3 2 1 30 30 H 1.09000 * 109.47100 * 300.00215 * 3 2 1 31 31 H 1.08998 * 109.47015 * 59.90521 * 4 3 2 32 32 H 1.08999 * 109.47553 * 299.90341 * 4 3 2 33 33 H 1.08996 * 109.47710 * 280.34632 * 6 5 4 34 34 H 1.09009 * 109.46593 * 40.34137 * 6 5 4 35 35 H 0.96997 * 119.99720 * 179.97438 * 10 9 7 36 36 H 1.08996 * 109.47394 * 53.95570 * 15 5 4 37 37 H 1.08999 * 109.47173 * 173.95140 * 15 5 4 38 38 H 0.96701 * 113.99708 * 90.00274 * 18 17 16 39 39 H 1.07999 * 119.06295 * 179.70938 * 20 19 17 40 40 H 0.96697 * 113.99984 * 270.02487 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 7 4.0597 2.8273 -0.0030 6 6 3.8177 3.4692 -1.3020 7 6 3.8706 4.9665 -1.1402 8 1 4.1383 5.3975 -0.1868 9 6 3.5775 5.7863 -2.2094 10 7 3.2512 5.2614 -3.3703 11 14 3.6438 7.6423 -2.0090 12 1 4.0344 7.9761 -0.6157 13 1 4.6431 8.2065 -2.9514 14 1 2.3071 8.2198 -2.3006 15 6 5.4835 2.8829 0.3545 16 6 5.6598 2.4427 1.7849 17 6 5.6135 3.3638 2.8250 18 8 5.4087 4.6791 2.5698 19 7 5.7689 2.9354 4.0742 20 6 5.9745 1.6594 4.3305 21 7 6.0299 0.7573 3.3718 22 6 5.8782 1.1060 2.0976 23 8 5.9372 0.1715 1.1176 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9329 0.9272 -0.8900 32 1 3.9337 0.9299 0.8899 33 1 4.5823 3.1531 -2.0116 34 1 2.8350 3.1784 -1.6735 35 1 3.0446 5.8381 -4.1223 36 1 6.0489 2.2212 -0.3016 37 1 5.8470 3.9042 0.2412 38 1 4.4772 4.9384 2.5653 39 1 6.1015 1.3441 5.3556 40 1 6.8258 0.0273 0.7646 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140475215.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:09 Heat of formation + Delta-G solvation = -64.096513 kcal Electronic energy + Delta-G solvation = -22853.189229 eV Core-core repulsion = 19474.628153 eV Total energy + Delta-G solvation = -3378.561075 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.41704 -39.24921 -38.92256 -37.86339 -35.69484 -34.67801 -33.56830 -32.74799 -30.23235 -28.85856 -26.80009 -25.04217 -24.49547 -24.04250 -22.12052 -21.39316 -20.64492 -19.51599 -18.94889 -18.38363 -17.05865 -16.90406 -16.57764 -16.30360 -16.24860 -15.44099 -15.39884 -15.28828 -14.55329 -14.46086 -14.14201 -13.89181 -13.73253 -13.39802 -13.25671 -13.09642 -12.74513 -12.63894 -12.49972 -12.18875 -12.10876 -11.75618 -11.69950 -11.46799 -11.38992 -11.29228 -11.19616 -10.58138 -10.47291 -10.27756 -9.05015 -8.15975 -6.24379 -0.25393 -0.22862 1.42623 1.44521 1.56862 2.30329 2.33389 2.43110 2.62415 3.15990 3.30753 3.34489 3.65342 3.78955 4.02329 4.12674 4.22003 4.29581 4.35045 4.46163 4.61424 4.75080 4.82362 4.83611 4.94684 4.97575 5.10105 5.15657 5.19902 5.26877 5.30162 5.41253 5.48504 5.70638 5.78454 6.10943 6.34640 6.43715 6.51100 6.60453 6.91404 6.96299 7.44804 8.94935 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.006678 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.392703 B = 4191.825488 C = 5736.570236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.109 4.109 4 C 0.063 3.937 5 N -0.531 5.531 6 C 0.209 3.791 7 C -0.511 4.511 8 H 0.069 0.931 9 C 0.002 3.998 10 N -0.936 5.936 11 Si 0.962 3.038 12 H -0.260 1.260 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.122 3.878 16 C -0.216 4.216 17 C 0.385 3.615 18 O -0.480 6.480 19 N -0.560 5.560 20 C 0.337 3.663 21 N -0.555 5.555 22 C 0.381 3.619 23 O -0.475 6.475 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.016 0.984 32 H 0.076 0.924 33 H -0.040 1.040 34 H 0.014 0.986 35 H 0.262 0.738 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.425 0.575 39 H 0.245 0.755 40 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 -9.871 12.133 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.147 4.147 4 C -0.065 4.065 5 N -0.255 5.255 6 C 0.083 3.917 7 C -0.550 4.550 8 H 0.087 0.913 9 C -0.195 4.195 10 N -0.578 5.578 11 Si 0.788 3.212 12 H -0.183 1.183 13 H -0.210 1.210 14 H -0.209 1.209 15 C -0.007 4.007 16 C -0.223 4.223 17 C 0.199 3.801 18 O -0.291 6.291 19 N -0.287 5.287 20 C 0.050 3.950 21 N -0.282 5.282 22 C 0.194 3.806 23 O -0.286 6.286 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.095 0.905 33 H -0.022 1.022 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.288 0.712 39 H 0.260 0.740 40 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 2.943 -9.810 13.135 16.656 hybrid contribution 0.281 0.928 -2.146 2.355 sum 3.223 -8.882 10.990 14.493 Atomic orbital electron populations 1.21736 0.94885 1.02218 1.01644 1.21426 0.96658 0.95282 1.01906 1.21541 0.94744 0.97260 1.01136 1.22104 0.95500 0.89033 0.99822 1.62129 1.15032 1.15960 1.32394 1.19429 0.94211 0.93940 0.84123 1.21511 1.45015 0.91544 0.96902 0.91297 1.25830 0.95165 1.03624 0.94900 1.70090 1.48509 1.36836 1.02315 0.85434 0.77437 0.79735 0.78629 1.18340 1.21001 1.20852 1.20465 0.89945 1.01233 0.89048 1.21857 1.08114 0.93561 0.98805 1.19276 0.89147 0.84863 0.86804 1.84572 1.33910 1.19019 1.91551 1.68119 1.17949 1.20250 1.22385 1.25397 0.87989 0.81650 0.99954 1.68118 1.18763 1.40642 1.00650 1.19165 0.89634 0.85136 0.86659 1.84736 1.36536 1.57746 1.49565 0.92640 0.93493 0.91156 0.92303 0.91583 0.92504 0.94090 0.96577 0.90544 1.02226 0.96800 0.92934 0.94208 0.90304 0.71151 0.73964 0.71227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.91 71.98 0.71 -2.83 16 2 C -0.11 -3.15 5.93 30.59 0.18 -2.97 16 3 C -0.11 -3.78 5.27 30.59 0.16 -3.61 16 4 C 0.06 2.29 4.32 86.30 0.37 2.67 16 5 N -0.53 -21.77 4.38 -905.35 -3.96 -25.73 16 6 C 0.21 10.67 4.59 85.56 0.39 11.06 16 7 C -0.51 -27.66 8.61 25.60 0.22 -27.44 16 8 H 0.07 3.59 7.66 -2.91 -0.02 3.57 16 9 C 0.00 0.13 5.46 84.65 0.46 0.60 16 10 N -0.94 -55.46 13.29 21.45 0.28 -55.18 16 11 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 12 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 15 C 0.12 4.44 4.61 85.56 0.39 4.84 16 16 C -0.22 -6.67 4.97 -19.49 -0.10 -6.77 16 17 C 0.39 11.85 7.80 84.71 0.66 12.51 16 18 O -0.48 -15.03 12.74 -88.48 -1.13 -16.16 16 19 N -0.56 -15.38 10.46 -313.01 -3.27 -18.65 16 20 C 0.34 7.51 12.28 180.91 2.22 9.73 16 21 N -0.56 -13.98 10.46 -313.02 -3.27 -17.25 16 22 C 0.38 10.34 6.58 84.70 0.56 10.89 16 23 O -0.47 -11.21 10.98 -88.41 -0.97 -12.18 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.04 1.65 6.49 -2.39 -0.02 1.63 16 31 H 0.02 0.61 8.06 -2.39 -0.02 0.59 16 32 H 0.08 2.60 4.59 -2.39 -0.01 2.58 16 33 H -0.04 -2.23 8.00 -2.39 -0.02 -2.25 16 34 H 0.01 0.78 6.19 -2.38 -0.01 0.76 16 35 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.04 1.39 7.60 -2.39 -0.02 1.37 16 37 H 0.08 3.22 6.80 -2.39 -0.02 3.20 16 38 H 0.43 11.06 9.06 -74.06 -0.67 10.39 16 39 H 0.24 3.03 8.06 -2.91 -0.02 3.01 16 40 H 0.42 5.81 9.06 -74.06 -0.67 5.14 16 Total: -1.00 -68.02 332.24 -4.32 -72.34 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -0.27 Total: 18.57 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 6.24 Total: 8.69 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -10.23 Total: -116.81 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -2.10 Total: -28.34 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -68.02 -4.32 -72.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140475215.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.247 kcal (2) G-P(sol) polarization free energy of solvation -68.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds