Wall clock time and date at job start Tue Mar 31 2020 05:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46857 * 2 1 4 4 N 1.46496 * 109.46881 * 119.99689 * 2 1 3 5 5 C 1.46503 * 120.00349 * 295.62715 * 4 2 1 6 6 C 1.50707 * 109.46915 * 269.99925 * 5 4 2 7 7 H 1.08004 * 119.99705 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00023 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00124 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00182 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47237 * 89.99560 * 10 8 6 12 12 H 1.48498 * 109.47387 * 209.99779 * 10 8 6 13 13 H 1.48508 * 109.46989 * 329.99938 * 10 8 6 14 14 C 1.34779 * 119.99873 * 115.62561 * 4 2 1 15 15 O 1.21283 * 119.99893 * 184.22644 * 14 4 2 16 16 C 1.50702 * 119.99874 * 4.22497 * 14 4 2 17 17 H 1.08996 * 109.46997 * 41.32758 * 16 14 4 18 18 O 1.42901 * 109.46542 * 161.32505 * 16 14 4 19 19 C 1.50695 * 109.46907 * 281.32283 * 16 14 4 20 20 C 1.39869 * 126.04405 * 277.64685 * 19 16 14 21 21 N 1.30831 * 108.20292 * 179.72494 * 20 19 16 22 22 N 1.40080 * 108.20955 * 0.24438 * 21 20 19 23 23 C 1.46494 * 126.04278 * 180.02562 * 22 21 20 24 24 C 1.34951 * 107.92497 * 359.97438 * 22 21 20 25 25 H 1.08997 * 109.47654 * 299.99842 * 1 2 3 26 26 H 1.08998 * 109.46854 * 60.00407 * 1 2 3 27 27 H 1.09007 * 109.46886 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47151 * 240.00041 * 2 1 3 29 29 H 1.08995 * 109.47262 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47435 * 300.00045 * 3 2 1 31 31 H 1.09009 * 109.47525 * 59.99611 * 3 2 1 32 32 H 1.08997 * 109.47032 * 29.99767 * 5 4 2 33 33 H 1.09001 * 109.47442 * 149.99997 * 5 4 2 34 34 H 0.97003 * 120.00363 * 180.02562 * 9 8 6 35 35 H 0.96699 * 114.00362 * 60.00262 * 18 16 14 36 36 H 1.08004 * 125.89623 * 359.97438 * 20 19 16 37 37 H 1.09000 * 109.47441 * 89.97096 * 23 22 21 38 38 H 1.09001 * 109.47345 * 209.97514 * 23 22 21 39 39 H 1.09004 * 109.46805 * 329.97222 * 23 22 21 40 40 H 1.07996 * 126.13430 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7451 -0.1366 2.5247 6 6 2.8593 0.7990 2.9176 7 1 3.6882 0.9641 2.2452 8 6 2.8205 1.4442 4.1354 9 7 3.7925 2.2610 4.4781 10 14 1.3872 1.1581 5.2988 11 1 1.6972 0.0149 6.1944 12 1 1.1602 2.3783 6.1141 13 1 0.1647 0.8536 4.5125 14 6 2.7188 -1.8355 1.0745 15 8 3.0570 -2.4477 2.0654 16 6 3.0819 -2.3551 -0.2927 17 1 3.3931 -1.5245 -0.9261 18 8 4.1536 -3.2932 -0.1765 19 6 1.8845 -3.0337 -0.9064 20 6 1.4687 -4.3469 -0.6637 21 7 0.3913 -4.5718 -1.3711 22 7 0.0902 -3.4090 -2.0917 23 6 -1.0385 -3.2310 -3.0085 24 6 1.0228 -2.4810 -1.7914 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 0.8023 0.4098 2.5036 33 1 1.6789 -0.9476 3.2499 34 1 3.7655 2.7147 5.3351 35 1 3.9468 -4.0604 0.3746 36 1 1.9511 -5.0521 -0.0030 37 1 -1.8995 -2.8547 -2.4562 38 1 -0.7658 -2.5179 -3.7865 39 1 -1.2900 -4.1883 -3.4652 40 1 1.0707 -1.4760 -2.1837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142685477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:58 Heat of formation + Delta-G solvation = 4.320793 kcal Electronic energy + Delta-G solvation = -23343.810431 eV Core-core repulsion = 19968.216152 eV Total energy + Delta-G solvation = -3375.594278 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.49752 -39.39301 -36.71826 -35.67269 -33.31716 -32.78910 -31.10912 -31.06860 -28.58389 -27.32430 -26.81729 -25.45780 -22.46104 -21.67715 -21.16234 -20.54501 -18.60600 -17.60669 -17.13257 -16.87070 -15.80617 -15.56893 -15.15666 -14.63295 -14.51690 -14.25416 -13.89906 -13.54629 -13.32081 -13.08555 -12.86532 -12.65152 -12.62817 -12.47079 -12.00354 -11.85346 -11.73894 -11.44129 -11.09379 -10.95001 -10.86001 -10.53144 -10.50150 -10.34984 -10.11463 -9.53753 -9.46184 -9.16889 -8.56827 -8.31068 -7.72053 -6.06801 -4.04410 1.72829 2.35380 2.61260 3.28988 3.30991 3.34993 3.37818 3.74943 4.32414 4.40683 4.60278 4.65553 4.85961 4.90292 5.02394 5.10521 5.12241 5.15333 5.26953 5.31451 5.43066 5.50333 5.68684 5.83740 5.95226 6.02309 6.17697 6.25491 6.46103 6.49171 6.74050 6.81313 6.94835 6.99186 7.34975 7.53323 7.62791 7.72545 8.24643 8.48903 8.90551 8.98860 9.53791 11.06313 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.005603 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.392387 B = 4996.492120 C = 5374.215338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 C -0.158 4.158 4 N -0.580 5.580 5 C 0.215 3.785 6 C -0.522 4.522 7 H 0.077 0.923 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.872 3.128 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.490 3.510 15 O -0.537 6.537 16 C 0.171 3.829 17 H 0.120 0.880 18 O -0.535 6.535 19 C -0.263 4.263 20 C 0.068 3.932 21 N -0.296 5.296 22 N -0.375 5.375 23 C 0.102 3.898 24 C 0.071 3.929 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.029 0.971 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.381 0.619 36 H 0.184 0.816 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.698 -7.149 -16.708 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 C -0.216 4.216 4 N -0.313 5.313 5 C 0.094 3.906 6 C -0.560 4.560 7 H 0.095 0.905 8 C -0.129 4.129 9 N -0.536 5.536 10 Si 0.699 3.301 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.276 3.724 15 O -0.415 6.415 16 C 0.107 3.893 17 H 0.138 0.862 18 O -0.339 6.339 19 C -0.275 4.275 20 C -0.119 4.119 21 N -0.117 5.117 22 N -0.157 5.157 23 C -0.040 4.040 24 C -0.075 4.075 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.230 0.770 36 H 0.200 0.800 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.203 -7.755 -16.829 21.153 hybrid contribution -0.432 0.368 1.302 1.420 sum -10.635 -7.387 -15.527 20.217 Atomic orbital electron populations 1.22200 0.95853 1.01633 1.02436 1.21135 0.93807 0.94507 0.87849 1.22150 1.02192 0.94951 1.02269 1.47959 1.52666 1.22666 1.07998 1.19626 0.96887 0.94419 0.79624 1.21333 1.06967 1.24342 1.03378 0.90458 1.24833 0.95826 0.94844 0.97446 1.69891 1.32149 1.29216 1.22313 0.86919 0.83388 0.77985 0.81791 1.19973 1.21154 1.19223 1.21067 0.78598 0.81441 0.91277 1.90660 1.53652 1.57959 1.39181 1.19970 0.84514 0.91547 0.93283 0.86241 1.86558 1.38190 1.36071 1.73125 1.20483 1.03235 0.96707 1.07090 1.23647 0.93705 0.96092 0.98424 1.77358 1.17466 1.05637 1.11215 1.48460 1.22321 1.09381 1.35522 1.21864 0.86565 1.03896 0.91649 1.22349 0.90835 0.95862 0.98483 0.91562 0.92103 0.92979 0.90693 0.91972 0.93193 0.90090 0.95276 0.94731 0.92634 0.77039 0.79956 0.90657 0.89394 0.89326 0.80556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.62 37.16 0.32 -1.79 16 2 C 0.13 1.97 2.55 -67.93 -0.17 1.80 16 3 C -0.16 -2.50 8.37 37.15 0.31 -2.18 16 4 N -0.58 -11.61 2.38 -167.47 -0.40 -12.01 16 5 C 0.21 5.17 3.57 -5.19 -0.02 5.15 16 6 C -0.52 -14.54 8.39 -34.44 -0.29 -14.83 16 7 H 0.08 2.36 7.79 -52.48 -0.41 1.95 16 8 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 9 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 10 Si 0.87 21.52 27.47 -169.99 -4.67 16.85 16 11 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 14 C 0.49 9.96 6.93 -10.98 -0.08 9.88 16 15 O -0.54 -13.07 15.88 -13.63 -0.22 -13.29 16 16 C 0.17 2.67 3.05 -29.04 -0.09 2.58 16 17 H 0.12 1.69 6.83 -51.93 -0.35 1.33 16 18 O -0.53 -8.56 13.02 -54.41 -0.71 -9.27 16 19 C -0.26 -3.54 4.87 -105.05 -0.51 -4.05 16 20 C 0.07 0.92 11.42 -17.37 -0.20 0.72 16 21 N -0.30 -4.03 12.57 30.62 0.39 -3.65 16 22 N -0.37 -4.11 4.01 -68.16 -0.27 -4.38 16 23 C 0.10 0.64 11.47 59.84 0.69 1.33 16 24 C 0.07 0.79 8.88 -17.22 -0.15 0.63 16 25 H 0.07 0.98 6.84 -51.93 -0.36 0.62 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.69 7.38 -51.92 -0.38 0.30 16 28 H 0.08 0.92 3.06 -51.93 -0.16 0.76 16 29 H 0.06 1.09 8.01 -51.93 -0.42 0.67 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.52 6.95 -51.92 -0.36 1.16 16 32 H 0.03 0.67 5.72 -51.93 -0.30 0.38 16 33 H 0.03 0.91 6.80 -51.93 -0.35 0.56 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.38 5.23 7.91 45.56 0.36 5.59 16 36 H 0.18 2.11 7.70 -52.48 -0.40 1.71 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.18 1.41 6.54 -52.49 -0.34 1.07 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -36.17 324.21 -5.27 -41.44 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.75 Total: 4.79 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -0.29 Total: 1.21 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.49 Total: -46.61 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.92 Total: -22.56 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -36.17 -5.27 -41.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142685477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.760 kcal (2) G-P(sol) polarization free energy of solvation -36.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds