Wall clock time and date at job start Tue Mar 31 2020 05:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46857 * 2 1 4 4 N 1.46496 * 109.46881 * 119.99689 * 2 1 3 5 5 C 1.46503 * 120.00349 * 295.62715 * 4 2 1 6 6 C 1.50707 * 109.46915 * 269.99925 * 5 4 2 7 7 H 1.08004 * 119.99705 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00023 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00124 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00182 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47237 * 89.99560 * 10 8 6 12 12 H 1.48498 * 109.47387 * 209.99779 * 10 8 6 13 13 H 1.48508 * 109.46989 * 329.99938 * 10 8 6 14 14 C 1.34779 * 119.99873 * 115.62561 * 4 2 1 15 15 O 1.21283 * 119.99893 * 184.22644 * 14 4 2 16 16 C 1.50702 * 119.99874 * 4.22497 * 14 4 2 17 17 H 1.08996 * 109.46997 * 41.32758 * 16 14 4 18 18 O 1.42901 * 109.46542 * 161.32505 * 16 14 4 19 19 C 1.50695 * 109.46907 * 281.32283 * 16 14 4 20 20 C 1.39869 * 126.04405 * 277.64685 * 19 16 14 21 21 N 1.30831 * 108.20292 * 179.72494 * 20 19 16 22 22 N 1.40080 * 108.20955 * 0.24438 * 21 20 19 23 23 C 1.46494 * 126.04278 * 180.02562 * 22 21 20 24 24 C 1.34951 * 107.92497 * 359.97438 * 22 21 20 25 25 H 1.08997 * 109.47654 * 299.99842 * 1 2 3 26 26 H 1.08998 * 109.46854 * 60.00407 * 1 2 3 27 27 H 1.09007 * 109.46886 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47151 * 240.00041 * 2 1 3 29 29 H 1.08995 * 109.47262 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47435 * 300.00045 * 3 2 1 31 31 H 1.09009 * 109.47525 * 59.99611 * 3 2 1 32 32 H 1.08997 * 109.47032 * 29.99767 * 5 4 2 33 33 H 1.09001 * 109.47442 * 149.99997 * 5 4 2 34 34 H 0.97003 * 120.00363 * 180.02562 * 9 8 6 35 35 H 0.96699 * 114.00362 * 60.00262 * 18 16 14 36 36 H 1.08004 * 125.89623 * 359.97438 * 20 19 16 37 37 H 1.09000 * 109.47441 * 89.97096 * 23 22 21 38 38 H 1.09001 * 109.47345 * 209.97514 * 23 22 21 39 39 H 1.09004 * 109.46805 * 329.97222 * 23 22 21 40 40 H 1.07996 * 126.13430 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7451 -0.1366 2.5247 6 6 2.8593 0.7990 2.9176 7 1 3.6882 0.9641 2.2452 8 6 2.8205 1.4442 4.1354 9 7 3.7925 2.2610 4.4781 10 14 1.3872 1.1581 5.2988 11 1 1.6972 0.0149 6.1944 12 1 1.1602 2.3783 6.1141 13 1 0.1647 0.8536 4.5125 14 6 2.7188 -1.8355 1.0745 15 8 3.0570 -2.4477 2.0654 16 6 3.0819 -2.3551 -0.2927 17 1 3.3931 -1.5245 -0.9261 18 8 4.1536 -3.2932 -0.1765 19 6 1.8845 -3.0337 -0.9064 20 6 1.4687 -4.3469 -0.6637 21 7 0.3913 -4.5718 -1.3711 22 7 0.0902 -3.4090 -2.0917 23 6 -1.0385 -3.2310 -3.0085 24 6 1.0228 -2.4810 -1.7914 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 0.8023 0.4098 2.5036 33 1 1.6789 -0.9476 3.2499 34 1 3.7655 2.7147 5.3351 35 1 3.9468 -4.0604 0.3746 36 1 1.9511 -5.0521 -0.0030 37 1 -1.8995 -2.8547 -2.4562 38 1 -0.7658 -2.5179 -3.7865 39 1 -1.2900 -4.1883 -3.4652 40 1 1.0707 -1.4760 -2.1837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142685477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:57 Heat of formation + Delta-G solvation = -23.547387 kcal Electronic energy + Delta-G solvation = -23345.018886 eV Core-core repulsion = 19968.216152 eV Total energy + Delta-G solvation = -3376.802733 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.46021 -40.84546 -38.08518 -37.12075 -34.88508 -34.09667 -32.65016 -32.21246 -30.18967 -28.41556 -27.92021 -26.62340 -24.30111 -22.94438 -22.10831 -21.59159 -20.05398 -19.05342 -18.68756 -18.44353 -17.26121 -16.46212 -16.34279 -16.12514 -15.93842 -15.58523 -15.01301 -14.89032 -14.81404 -14.46048 -13.97809 -13.82450 -13.61927 -13.48658 -13.42486 -13.30220 -13.15734 -12.86069 -12.62034 -12.40228 -12.31285 -12.14046 -11.93710 -11.69172 -11.58049 -11.53476 -10.79425 -10.61457 -10.37583 -9.46407 -9.32199 -8.29915 -6.32115 0.86594 1.30500 1.35039 1.42046 1.52363 1.65134 1.83106 2.29254 2.31751 3.03952 3.42897 3.51973 3.68518 3.79249 3.99067 4.06875 4.25517 4.28468 4.33834 4.39245 4.50854 4.71782 4.76746 4.80904 4.86696 4.90520 4.90948 4.99482 5.04685 5.08849 5.39863 5.49020 5.50773 5.62512 5.69606 6.07550 6.28674 6.51230 6.63634 6.68965 6.74576 7.24338 7.39029 8.86586 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.005603 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.392387 B = 4996.492120 C = 5374.215338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.125 3.875 3 C -0.153 4.153 4 N -0.585 5.585 5 C 0.226 3.774 6 C -0.517 4.517 7 H 0.036 0.964 8 C 0.013 3.987 9 N -0.944 5.944 10 Si 0.937 3.063 11 H -0.281 1.281 12 H -0.275 1.275 13 H -0.242 1.242 14 C 0.478 3.522 15 O -0.591 6.591 16 C 0.188 3.812 17 H 0.138 0.862 18 O -0.546 6.546 19 C -0.288 4.288 20 C 0.053 3.947 21 N -0.324 5.324 22 N -0.369 5.369 23 C 0.089 3.911 24 C 0.090 3.910 25 H 0.044 0.956 26 H 0.106 0.894 27 H 0.052 0.948 28 H 0.110 0.890 29 H 0.034 0.966 30 H 0.097 0.903 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.010 0.990 34 H 0.266 0.734 35 H 0.388 0.612 36 H 0.186 0.814 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.091 0.909 40 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.446 -6.909 -19.406 24.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 C -0.211 4.211 4 N -0.317 5.317 5 C 0.103 3.897 6 C -0.556 4.556 7 H 0.055 0.945 8 C -0.184 4.184 9 N -0.585 5.585 10 Si 0.761 3.239 11 H -0.207 1.207 12 H -0.201 1.201 13 H -0.165 1.165 14 C 0.266 3.734 15 O -0.472 6.472 16 C 0.124 3.876 17 H 0.156 0.844 18 O -0.352 6.352 19 C -0.301 4.301 20 C -0.132 4.132 21 N -0.146 5.146 22 N -0.150 5.150 23 C -0.050 4.050 24 C -0.058 4.058 25 H 0.063 0.937 26 H 0.125 0.875 27 H 0.071 0.929 28 H 0.128 0.872 29 H 0.053 0.947 30 H 0.116 0.884 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.075 0.925 35 H 0.238 0.762 36 H 0.203 0.797 37 H 0.105 0.895 38 H 0.141 0.859 39 H 0.110 0.890 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -12.994 -7.521 -19.590 24.681 hybrid contribution 0.450 0.305 2.022 2.094 sum -12.544 -7.217 -17.568 22.761 Atomic orbital electron populations 1.22161 0.93481 1.02032 1.03691 1.21557 0.95628 0.93691 0.86888 1.22099 1.00444 0.95775 1.02805 1.48085 1.52662 1.22843 1.08069 1.19231 0.95976 0.92754 0.81724 1.21492 1.06809 1.24615 1.02697 0.94531 1.25717 0.98757 0.94614 0.99358 1.70036 1.34547 1.30766 1.23127 0.85877 0.80774 0.77793 0.79487 1.20651 1.20068 1.16540 1.22136 0.77431 0.80993 0.92862 1.90617 1.55609 1.59560 1.41460 1.19851 0.85403 0.92045 0.90302 0.84442 1.86518 1.39006 1.36486 1.73190 1.20291 1.03676 0.96984 1.09129 1.23820 0.94007 0.96621 0.98755 1.77315 1.17685 1.07429 1.12153 1.48848 1.22816 1.08406 1.34909 1.22313 0.85597 1.05277 0.91840 1.22806 0.89376 0.96889 0.96753 0.93690 0.87492 0.92924 0.87228 0.94696 0.88434 0.93675 0.93566 0.97213 0.92476 0.76202 0.79722 0.89468 0.85895 0.88993 0.76866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 8.62 71.98 0.62 -2.76 16 2 C 0.12 3.40 2.55 44.99 0.11 3.52 16 3 C -0.15 -4.59 8.37 71.98 0.60 -3.99 16 4 N -0.59 -23.22 2.38 -802.13 -1.91 -25.13 16 5 C 0.23 10.96 3.57 85.63 0.31 11.27 16 6 C -0.52 -29.89 8.39 25.60 0.21 -29.67 16 7 H 0.04 2.35 7.79 -2.91 -0.02 2.33 16 8 C 0.01 0.78 5.47 84.65 0.46 1.25 16 9 N -0.94 -59.53 13.96 21.44 0.30 -59.23 16 10 Si 0.94 44.90 27.47 68.60 1.88 46.78 16 11 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.24 -10.50 6.54 99.48 0.65 -9.84 16 14 C 0.48 19.56 6.93 87.66 0.61 20.17 16 15 O -0.59 -29.92 15.88 15.30 0.24 -29.68 16 16 C 0.19 5.65 3.05 29.10 0.09 5.74 16 17 H 0.14 3.55 6.83 -2.39 -0.02 3.53 16 18 O -0.55 -17.46 13.02 -130.64 -1.70 -19.16 16 19 C -0.29 -7.15 4.87 -20.14 -0.10 -7.24 16 20 C 0.05 1.39 11.42 85.24 0.97 2.37 16 21 N -0.32 -8.25 12.57 -57.02 -0.72 -8.96 16 22 N -0.37 -6.71 4.01 -369.57 -1.48 -8.19 16 23 C 0.09 0.72 11.47 127.77 1.47 2.18 16 24 C 0.09 1.60 8.88 83.54 0.74 2.35 16 25 H 0.04 1.19 6.84 -2.39 -0.02 1.17 16 26 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.16 7.38 -2.38 -0.02 1.14 16 28 H 0.11 2.22 3.06 -2.39 -0.01 2.21 16 29 H 0.03 1.21 8.01 -2.39 -0.02 1.19 16 30 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.04 1.67 6.95 -2.38 -0.02 1.65 16 32 H 0.05 2.09 5.72 -2.39 -0.01 2.08 16 33 H 0.01 0.53 6.80 -2.39 -0.02 0.51 16 34 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 35 H 0.39 11.00 7.91 -74.06 -0.59 10.42 16 36 H 0.19 4.37 7.70 -2.91 -0.02 4.35 16 37 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.21 2.01 6.54 -2.91 -0.02 1.99 16 Total: -1.00 -84.14 324.21 3.14 -81.00 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.42 Total: 17.40 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 6.10 Total: 5.17 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -3.81 Total: -101.52 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -1.46 Total: -48.84 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -84.14 3.14 -81.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142685477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.456 kcal (2) G-P(sol) polarization free energy of solvation -84.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds