Wall clock time and date at job start Tue Mar 31 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47138 * 2 1 4 4 C 1.36939 * 119.99904 * 275.73105 * 3 2 1 5 5 H 1.07994 * 120.00272 * 33.27106 * 4 3 2 6 6 C 1.38816 * 119.99670 * 213.27139 * 4 3 2 7 7 N 1.31610 * 120.00422 * 17.26668 * 6 4 3 8 8 Si 1.86804 * 119.99562 * 197.26774 * 6 4 3 9 9 H 1.48499 * 109.47337 * 90.00125 * 8 6 4 10 10 H 1.48501 * 109.46941 * 209.99940 * 8 6 4 11 11 H 1.48503 * 109.47431 * 329.99960 * 8 6 4 12 12 C 1.46497 * 119.99970 * 95.73406 * 3 2 1 13 13 H 1.09008 * 109.47225 * 180.08270 * 12 3 2 14 14 C 1.53000 * 109.47240 * 60.08678 * 12 3 2 15 15 C 1.52995 * 109.47354 * 300.08577 * 12 3 2 16 16 N 1.46505 * 109.46728 * 305.00099 * 15 12 3 17 17 C 1.34776 * 119.99801 * 179.97438 * 16 15 12 18 18 O 1.21497 * 119.99986 * 359.97438 * 17 16 15 19 19 C 1.48329 * 119.99973 * 180.02562 * 17 16 15 20 20 C 1.42280 * 126.93757 * 179.71459 * 19 17 16 21 21 C 1.35323 * 103.91791 * 179.84836 * 20 19 17 22 22 C 1.50696 * 126.66070 * 180.10285 * 21 20 19 23 23 O 1.34019 * 106.66826 * 0.40422 * 21 20 19 24 24 N 1.20903 * 111.84732 * 359.71746 * 23 21 20 25 25 H 1.09001 * 109.46821 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46895 * 300.00342 * 1 2 3 27 27 H 1.08996 * 109.46512 * 60.00017 * 1 2 3 28 28 H 1.09006 * 109.47368 * 239.99688 * 2 1 3 29 29 H 1.08996 * 109.47184 * 120.00320 * 2 1 3 30 30 H 0.97004 * 120.00119 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.47376 * 179.97438 * 14 12 3 32 32 H 1.09000 * 109.46911 * 299.99651 * 14 12 3 33 33 H 1.09001 * 109.47542 * 59.99664 * 14 12 3 34 34 H 1.08999 * 109.47644 * 185.00224 * 15 12 3 35 35 H 1.08997 * 109.47137 * 64.99820 * 15 12 3 36 36 H 0.96995 * 120.00538 * 359.97438 * 16 15 12 37 37 H 1.07992 * 128.04024 * 359.97438 * 20 19 17 38 38 H 1.09005 * 109.46914 * 180.33414 * 22 21 20 39 39 H 1.09000 * 109.47651 * 300.32988 * 22 21 20 40 40 H 1.08995 * 109.47353 * 60.32987 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4371 1.8810 -1.9831 6 6 3.1502 2.9986 -1.3439 7 7 4.1871 2.9917 -0.5334 8 14 3.0446 4.2630 -2.7148 9 1 2.3489 5.4766 -2.2164 10 1 4.4140 4.6254 -3.1605 11 1 2.2870 3.6923 -3.8574 12 6 2.3820 2.0295 1.2624 13 1 2.7191 3.0471 1.0643 14 6 3.5078 1.2412 1.9348 15 6 1.1631 2.0668 2.1863 16 7 0.0468 2.7174 1.4958 17 6 -1.1388 2.8630 2.1201 18 8 -1.2818 2.4544 3.2553 19 6 -2.2692 3.5212 1.4208 20 6 -3.5773 3.7462 1.9335 21 6 -4.2200 4.3738 0.9215 22 6 -5.6494 4.8510 0.9222 23 8 -3.3404 4.4825 -0.0838 24 7 -2.2666 4.0078 0.2047 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.8967 3.6431 -0.6481 31 1 3.7787 1.7239 2.8739 32 1 3.1707 0.2237 2.1329 33 1 4.3762 1.2146 1.2766 34 1 1.4081 2.6268 3.0887 35 1 0.8802 1.0492 2.4557 36 1 0.1608 3.0433 0.5894 37 1 -3.9660 3.4801 2.9052 38 1 -5.8788 5.3127 -0.0383 39 1 -6.3153 4.0038 1.0862 40 1 -5.7882 5.5817 1.7189 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151720991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:04 Heat of formation + Delta-G solvation = 42.038561 kcal Electronic energy + Delta-G solvation = -22960.555072 eV Core-core repulsion = 19586.596359 eV Total energy + Delta-G solvation = -3373.958713 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.01105 -39.24439 -36.93038 -34.09963 -33.85931 -33.18727 -31.85999 -31.02019 -28.18638 -27.93437 -26.25583 -23.95077 -23.68010 -22.49633 -21.67543 -19.64253 -19.19582 -17.77992 -17.53514 -16.93696 -16.46885 -15.52407 -14.89715 -14.75598 -14.16906 -14.04757 -13.80994 -13.62657 -13.49700 -13.14144 -12.70293 -12.57826 -12.36075 -12.17415 -11.84803 -11.52401 -11.39318 -11.05637 -10.93825 -10.79676 -10.70925 -10.35156 -10.27647 -10.08207 -9.83930 -9.64244 -9.44543 -9.44224 -8.53930 -8.46533 -6.66850 -5.86811 -3.35419 1.25607 1.71906 2.95713 3.35142 3.41761 3.43008 3.44740 3.48778 4.15885 4.44654 4.59572 4.93043 5.08990 5.14129 5.27188 5.31573 5.39595 5.48479 5.62631 5.85801 5.91704 6.05150 6.14464 6.23419 6.36428 6.45609 6.53342 6.59658 6.67150 6.82081 6.91550 6.94866 7.16637 7.46464 7.56299 7.79974 7.91903 8.19255 8.44202 8.54443 9.17380 9.78402 10.34945 11.19889 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016200 B = 0.005902 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.966127 B = 4742.652490 C = 5694.197290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.583 5.583 4 C -0.262 4.262 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.176 3.824 13 H 0.101 0.899 14 C -0.143 4.143 15 C 0.099 3.901 16 N -0.681 5.681 17 C 0.586 3.414 18 O -0.544 6.544 19 C -0.021 4.021 20 C -0.186 4.186 21 C -0.045 4.045 22 C -0.071 4.071 23 O 0.121 5.879 24 N -0.322 5.322 25 H 0.033 0.967 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.254 0.746 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.418 0.582 37 H 0.178 0.822 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.733 2.098 4.033 15.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.304 5.304 4 C -0.391 4.391 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.203 1.203 12 C 0.068 3.932 13 H 0.119 0.881 14 C -0.203 4.203 15 C -0.026 4.026 16 N -0.331 5.331 17 C 0.369 3.631 18 O -0.422 6.422 19 C -0.180 4.180 20 C -0.209 4.209 21 C -0.108 4.108 22 C -0.129 4.129 23 O 0.045 5.955 24 N -0.023 5.023 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.256 0.744 37 H 0.195 0.805 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.629 1.932 3.881 14.302 hybrid contribution -0.331 0.653 -0.416 0.842 sum -13.960 2.585 3.465 14.614 Atomic orbital electron populations 1.22453 1.00141 0.98962 1.01463 1.20756 0.91569 0.87410 0.98802 1.43888 1.75950 1.08309 1.02273 1.19100 1.08522 1.18180 0.93329 0.91833 1.25136 0.94489 1.01252 0.97889 1.70000 1.07850 1.35919 1.39665 0.86387 0.76821 0.82028 0.82126 1.21311 1.21782 1.20336 1.20513 0.88758 0.99725 0.84205 0.88150 1.22015 1.01051 0.97921 0.99267 1.22320 0.87869 0.96396 0.95995 1.45920 1.10252 1.57551 1.19407 1.16937 0.81515 0.79364 0.85249 1.90741 1.82906 1.50920 1.17589 1.23685 0.97405 1.04724 0.92213 1.22391 0.92221 1.04079 1.02168 1.24477 0.95841 1.02340 0.88114 1.20325 0.85545 1.02340 1.04643 1.84818 1.15224 1.57981 1.37497 1.74296 1.01609 1.10718 1.15627 0.94784 0.93260 0.93443 0.93990 0.94436 0.93570 0.94766 0.95082 0.90170 0.92473 0.92364 0.74388 0.80476 0.89768 0.89135 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 9.87 37.16 0.37 -2.90 16 2 C 0.14 2.94 5.67 -4.04 -0.02 2.91 16 3 N -0.58 -13.53 1.85 -165.66 -0.31 -13.84 16 4 C -0.26 -6.74 9.26 -15.06 -0.14 -6.88 16 5 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 6 C 0.01 0.32 4.85 -17.43 -0.08 0.24 16 7 N -0.89 -24.10 10.60 55.49 0.59 -23.51 16 8 Si 0.90 21.14 29.59 -169.99 -5.03 16.11 16 9 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.18 3.86 1.92 -67.93 -0.13 3.73 16 13 H 0.10 2.51 6.04 -51.92 -0.31 2.20 16 14 C -0.14 -2.96 9.05 37.16 0.34 -2.62 16 15 C 0.10 1.98 4.34 -4.04 -0.02 1.96 16 16 N -0.68 -13.57 3.98 -61.10 -0.24 -13.81 16 17 C 0.59 11.37 7.61 -12.11 -0.09 11.28 16 18 O -0.54 -11.45 16.95 5.37 0.09 -11.35 16 19 C -0.02 -0.35 7.19 -82.52 -0.59 -0.95 16 20 C -0.19 -2.46 10.92 -39.07 -0.43 -2.89 16 21 C -0.04 -0.49 7.47 -35.35 -0.26 -0.76 16 22 C -0.07 -0.41 10.44 36.00 0.38 -0.03 16 23 O 0.12 1.71 11.18 17.24 0.19 1.90 16 24 N -0.32 -5.52 11.84 33.30 0.39 -5.13 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.97 4.99 -51.93 -0.26 0.71 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 29 H 0.04 0.74 6.45 -51.93 -0.33 0.41 16 30 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.03 0.59 6.67 -51.93 -0.35 0.24 16 33 H 0.08 1.88 7.40 -51.93 -0.38 1.49 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.16 7.05 -51.93 -0.37 0.80 16 36 H 0.42 8.89 7.66 -40.82 -0.31 8.57 16 37 H 0.18 1.98 8.06 -52.49 -0.42 1.56 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -29.37 331.50 -5.68 -35.04 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.67 Total: 6.50 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -0.69 Total: 3.10 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.43 Total: -56.29 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.28 Total: -9.46 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.37 -5.68 -35.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151720991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.082 kcal (2) G-P(sol) polarization free energy of solvation -29.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds