Wall clock time and date at job start Tue Mar 31 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47138 * 2 1 4 4 C 1.36939 * 119.99904 * 275.73105 * 3 2 1 5 5 H 1.07994 * 120.00272 * 33.27106 * 4 3 2 6 6 C 1.38816 * 119.99670 * 213.27139 * 4 3 2 7 7 N 1.31610 * 120.00422 * 17.26668 * 6 4 3 8 8 Si 1.86804 * 119.99562 * 197.26774 * 6 4 3 9 9 H 1.48499 * 109.47337 * 90.00125 * 8 6 4 10 10 H 1.48501 * 109.46941 * 209.99940 * 8 6 4 11 11 H 1.48503 * 109.47431 * 329.99960 * 8 6 4 12 12 C 1.46497 * 119.99970 * 95.73406 * 3 2 1 13 13 H 1.09008 * 109.47225 * 180.08270 * 12 3 2 14 14 C 1.53000 * 109.47240 * 60.08678 * 12 3 2 15 15 C 1.52995 * 109.47354 * 300.08577 * 12 3 2 16 16 N 1.46505 * 109.46728 * 305.00099 * 15 12 3 17 17 C 1.34776 * 119.99801 * 179.97438 * 16 15 12 18 18 O 1.21497 * 119.99986 * 359.97438 * 17 16 15 19 19 C 1.48329 * 119.99973 * 180.02562 * 17 16 15 20 20 C 1.42280 * 126.93757 * 179.71459 * 19 17 16 21 21 C 1.35323 * 103.91791 * 179.84836 * 20 19 17 22 22 C 1.50696 * 126.66070 * 180.10285 * 21 20 19 23 23 O 1.34019 * 106.66826 * 0.40422 * 21 20 19 24 24 N 1.20903 * 111.84732 * 359.71746 * 23 21 20 25 25 H 1.09001 * 109.46821 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46895 * 300.00342 * 1 2 3 27 27 H 1.08996 * 109.46512 * 60.00017 * 1 2 3 28 28 H 1.09006 * 109.47368 * 239.99688 * 2 1 3 29 29 H 1.08996 * 109.47184 * 120.00320 * 2 1 3 30 30 H 0.97004 * 120.00119 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.47376 * 179.97438 * 14 12 3 32 32 H 1.09000 * 109.46911 * 299.99651 * 14 12 3 33 33 H 1.09001 * 109.47542 * 59.99664 * 14 12 3 34 34 H 1.08999 * 109.47644 * 185.00224 * 15 12 3 35 35 H 1.08997 * 109.47137 * 64.99820 * 15 12 3 36 36 H 0.96995 * 120.00538 * 359.97438 * 16 15 12 37 37 H 1.07992 * 128.04024 * 359.97438 * 20 19 17 38 38 H 1.09005 * 109.46914 * 180.33414 * 22 21 20 39 39 H 1.09000 * 109.47651 * 300.32988 * 22 21 20 40 40 H 1.08995 * 109.47353 * 60.32987 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4371 1.8810 -1.9831 6 6 3.1502 2.9986 -1.3439 7 7 4.1871 2.9917 -0.5334 8 14 3.0446 4.2630 -2.7148 9 1 2.3489 5.4766 -2.2164 10 1 4.4140 4.6254 -3.1605 11 1 2.2870 3.6923 -3.8574 12 6 2.3820 2.0295 1.2624 13 1 2.7191 3.0471 1.0643 14 6 3.5078 1.2412 1.9348 15 6 1.1631 2.0668 2.1863 16 7 0.0468 2.7174 1.4958 17 6 -1.1388 2.8630 2.1201 18 8 -1.2818 2.4544 3.2553 19 6 -2.2692 3.5212 1.4208 20 6 -3.5773 3.7462 1.9335 21 6 -4.2200 4.3738 0.9215 22 6 -5.6494 4.8510 0.9222 23 8 -3.3404 4.4825 -0.0838 24 7 -2.2666 4.0078 0.2047 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.8967 3.6431 -0.6481 31 1 3.7787 1.7239 2.8739 32 1 3.1707 0.2237 2.1329 33 1 4.3762 1.2146 1.2766 34 1 1.4081 2.6268 3.0887 35 1 0.8802 1.0492 2.4557 36 1 0.1608 3.0433 0.5894 37 1 -3.9660 3.4801 2.9052 38 1 -5.8788 5.3127 -0.0383 39 1 -6.3153 4.0038 1.0862 40 1 -5.7882 5.5817 1.7189 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151720991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:03 Heat of formation + Delta-G solvation = 24.319839 kcal Electronic energy + Delta-G solvation = -22961.323414 eV Core-core repulsion = 19586.596359 eV Total energy + Delta-G solvation = -3374.727055 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -46.15774 -40.80020 -38.66886 -35.45652 -35.15564 -34.29326 -33.74549 -32.68576 -30.00082 -28.68688 -27.78580 -25.84820 -25.05033 -23.68483 -23.34369 -21.17841 -20.83205 -18.96379 -18.88244 -18.48921 -17.85437 -17.14018 -16.63287 -16.51318 -15.75303 -15.57668 -15.11743 -14.71686 -14.43957 -14.37654 -14.05222 -13.95534 -13.86069 -13.56981 -13.29212 -13.25054 -12.84805 -12.76036 -12.61196 -12.50417 -12.35958 -12.09241 -11.92971 -11.55149 -11.42753 -11.39908 -11.22131 -10.47734 -10.38956 -10.09954 -8.57765 -7.86659 -5.36360 0.07613 0.68495 1.44726 1.48990 1.54701 1.91577 2.05445 2.17267 2.50437 2.94297 3.27559 3.55722 3.63324 3.95313 4.11051 4.20982 4.36200 4.39449 4.49576 4.60391 4.75697 4.79906 4.80481 4.84684 4.86761 4.89017 4.91775 5.00863 5.17345 5.25832 5.26711 5.33395 5.51631 5.64755 5.71331 5.84264 6.38690 6.47229 6.93405 7.09937 7.20614 7.88271 8.39528 9.17103 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016200 B = 0.005902 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.966127 B = 4742.652490 C = 5694.197290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 N -0.592 5.592 4 C -0.262 4.262 5 H 0.054 0.946 6 C -0.028 4.028 7 N -0.911 5.911 8 Si 0.948 3.052 9 H -0.290 1.290 10 H -0.295 1.295 11 H -0.275 1.275 12 C 0.180 3.820 13 H 0.068 0.932 14 C -0.133 4.133 15 C 0.111 3.889 16 N -0.685 5.685 17 C 0.588 3.412 18 O -0.564 6.564 19 C -0.051 4.051 20 C -0.198 4.198 21 C -0.019 4.019 22 C -0.070 4.070 23 O 0.125 5.875 24 N -0.355 5.355 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.032 0.968 28 H 0.033 0.967 29 H 0.050 0.950 30 H 0.250 0.750 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.411 0.589 37 H 0.196 0.804 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.139 2.257 4.350 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.014 3.986 3 N -0.314 5.314 4 C -0.393 4.393 5 H 0.072 0.928 6 C -0.226 4.226 7 N -0.555 5.555 8 Si 0.778 3.222 9 H -0.217 1.217 10 H -0.222 1.222 11 H -0.200 1.200 12 C 0.073 3.927 13 H 0.086 0.914 14 C -0.192 4.192 15 C -0.014 4.014 16 N -0.334 5.334 17 C 0.372 3.628 18 O -0.444 6.444 19 C -0.208 4.208 20 C -0.220 4.220 21 C -0.082 4.082 22 C -0.127 4.127 23 O 0.047 5.953 24 N -0.055 5.055 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.248 0.752 37 H 0.213 0.787 38 H 0.118 0.882 39 H 0.131 0.869 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.039 2.072 4.204 16.710 hybrid contribution 0.296 0.609 -0.519 0.853 sum -15.743 2.680 3.685 16.389 Atomic orbital electron populations 1.22269 0.98609 1.00282 1.00345 1.20832 0.92581 0.86152 0.98985 1.43998 1.76138 1.09266 1.01999 1.19174 1.07841 1.18335 0.93918 0.92786 1.25641 0.94498 1.02704 0.99719 1.70114 1.08222 1.36301 1.40852 0.85573 0.76279 0.80095 0.80277 1.21666 1.22175 1.19993 1.20380 0.89935 0.98103 0.84274 0.91367 1.21864 0.99304 0.98827 0.99249 1.22110 0.87128 0.96706 0.95499 1.45923 1.10689 1.57805 1.19020 1.17199 0.81717 0.78819 0.85030 1.90711 1.83346 1.51903 1.18398 1.23600 0.98140 1.06158 0.92924 1.22659 0.90796 1.04992 1.03597 1.25388 0.96984 0.99713 0.86090 1.20674 0.81888 1.03737 1.06431 1.84773 1.15024 1.57175 1.38341 1.74295 1.03235 1.11921 1.16019 0.92186 0.93937 0.94902 0.94830 0.93132 0.94112 0.92858 0.93563 0.93137 0.91852 0.92054 0.75241 0.78689 0.88224 0.86903 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.80 9.87 71.98 0.71 -5.09 16 2 C 0.14 5.75 5.67 86.38 0.49 6.24 16 3 N -0.59 -27.69 1.85 -678.04 -1.25 -28.94 16 4 C -0.26 -13.70 9.26 84.03 0.78 -12.92 16 5 H 0.05 2.89 7.89 -2.91 -0.02 2.87 16 6 C -0.03 -1.48 4.85 84.86 0.41 -1.07 16 7 N -0.91 -50.22 10.60 21.65 0.23 -49.99 16 8 Si 0.95 44.14 29.59 68.60 2.03 46.17 16 9 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 10 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 12 C 0.18 7.99 1.92 44.99 0.09 8.08 16 13 H 0.07 3.50 6.04 -2.38 -0.01 3.49 16 14 C -0.13 -5.45 9.05 71.98 0.65 -4.80 16 15 C 0.11 4.39 4.34 86.38 0.37 4.76 16 16 N -0.69 -27.57 3.98 -465.51 -1.86 -29.43 16 17 C 0.59 22.83 7.61 86.93 0.66 23.49 16 18 O -0.56 -23.59 16.95 -3.71 -0.06 -23.65 16 19 C -0.05 -1.71 7.19 42.96 0.31 -1.41 16 20 C -0.20 -4.88 10.92 22.60 0.25 -4.63 16 21 C -0.02 -0.36 7.47 25.01 0.19 -0.17 16 22 C -0.07 -0.51 10.44 71.23 0.74 0.23 16 23 O 0.12 3.34 11.18 71.85 0.80 4.14 16 24 N -0.36 -12.09 11.84 -49.51 -0.59 -12.68 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.04 1.63 4.99 -2.39 -0.01 1.62 16 27 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.03 1.42 8.09 -2.38 -0.02 1.40 16 29 H 0.05 1.94 6.45 -2.39 -0.02 1.92 16 30 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 31 H 0.05 1.93 8.14 -2.38 -0.02 1.92 16 32 H 0.05 1.71 6.67 -2.39 -0.02 1.70 16 33 H 0.05 2.37 7.40 -2.39 -0.02 2.35 16 34 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.06 2.40 7.05 -2.39 -0.02 2.38 16 36 H 0.41 17.88 7.66 -92.71 -0.71 17.17 16 37 H 0.20 3.93 8.06 -2.91 -0.02 3.91 16 38 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 39 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -64.35 331.50 5.30 -59.05 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.35 Total: 22.62 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 5.65 Total: 12.71 kcal Atomic # 7 Polarization: -117.58 SS G_CDS: -3.46 Total: -121.04 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.74 Total: -19.51 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -64.35 5.30 -59.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151720991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.369 kcal (2) G-P(sol) polarization free energy of solvation -64.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds