Wall clock time and date at job start Tue Mar 31 2020 05:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47048 * 2 1 4 4 C 1.36933 * 120.00178 * 275.73171 * 3 2 1 5 5 H 1.08003 * 119.99689 * 33.27026 * 4 3 2 6 6 C 1.38802 * 120.00107 * 213.27169 * 4 3 2 7 7 N 1.31621 * 120.00180 * 17.27117 * 6 4 3 8 8 Si 1.86803 * 120.00095 * 197.27173 * 6 4 3 9 9 H 1.48503 * 109.46850 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47370 * 119.99645 * 8 6 4 11 11 H 1.48504 * 109.47394 * 239.99865 * 8 6 4 12 12 C 1.46498 * 119.99699 * 95.73507 * 3 2 1 13 13 H 1.08998 * 109.46807 * 180.08391 * 12 3 2 14 14 C 1.52995 * 109.47395 * 60.08340 * 12 3 2 15 15 C 1.53003 * 109.47037 * 300.08303 * 12 3 2 16 16 N 1.46501 * 109.47258 * 304.99954 * 15 12 3 17 17 C 1.34771 * 120.00440 * 180.02562 * 16 15 12 18 18 O 1.21589 * 119.99582 * 0.02562 * 17 16 15 19 19 C 1.47515 * 120.00273 * 180.27658 * 17 16 15 20 20 O 1.34643 * 126.94024 * 359.75114 * 19 17 16 21 21 N 1.20893 * 111.46250 * 179.97438 * 20 19 17 22 22 C 1.30125 * 111.98430 * 359.97438 * 21 20 19 23 23 C 1.36827 * 126.94267 * 179.43276 * 19 17 16 24 24 C 1.50697 * 128.07522 * 0.02562 * 23 19 17 25 25 H 1.08999 * 109.47497 * 300.00029 * 1 2 3 26 26 H 1.08997 * 109.47052 * 59.99901 * 1 2 3 27 27 H 1.08997 * 109.47080 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47497 * 239.99971 * 2 1 3 29 29 H 1.08997 * 109.47052 * 120.00099 * 2 1 3 30 30 H 0.96996 * 119.99985 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47292 * 59.99835 * 14 12 3 32 32 H 1.08999 * 109.47242 * 179.97438 * 14 12 3 33 33 H 1.08998 * 109.47184 * 299.99819 * 14 12 3 34 34 H 1.08999 * 109.47146 * 185.00755 * 15 12 3 35 35 H 1.08994 * 109.47357 * 65.00146 * 15 12 3 36 36 H 0.97009 * 119.99820 * 0.02562 * 16 15 12 37 37 H 1.07999 * 126.70484 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.46872 * 89.99972 * 24 23 19 39 39 H 1.09006 * 109.46976 * 209.99384 * 24 23 19 40 40 H 1.08995 * 109.47341 * 329.99677 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1349 2.0663 -1.1799 5 1 1.4369 1.8811 -1.9830 6 6 3.1500 2.9986 -1.3438 7 7 4.1871 2.9918 -0.5333 8 14 3.0444 4.2632 -2.7146 9 1 1.7886 4.0592 -3.4806 10 1 3.0521 5.6285 -2.1304 11 1 4.2087 4.1070 -3.6231 12 6 2.3820 2.0296 1.2624 13 1 2.7190 3.0470 1.0644 14 6 3.5076 1.2413 1.9348 15 6 1.1629 2.0668 2.1863 16 7 0.0466 2.7174 1.4959 17 6 -1.1386 2.8640 2.1204 18 8 -1.2812 2.4567 3.2571 19 6 -2.2645 3.5137 1.4230 20 8 -2.2622 4.0127 0.1725 21 7 -3.3374 4.4826 -0.1183 22 6 -4.1950 4.3754 0.8545 23 6 -3.5239 3.7255 1.9141 24 6 -4.0674 3.3543 3.2698 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 4.8962 3.6435 -0.6476 31 1 4.3761 1.2147 1.2767 32 1 3.7785 1.7239 2.8739 33 1 3.1706 0.2238 2.1329 34 1 1.4079 2.6269 3.0887 35 1 0.8800 1.0493 2.4557 36 1 0.1605 3.0428 0.5891 37 1 -5.2207 4.7136 0.8510 38 1 -3.9012 4.1768 3.9655 39 1 -5.1363 3.1557 3.1907 40 1 -3.5580 2.4620 3.6336 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156161893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:00 Heat of formation + Delta-G solvation = 42.412349 kcal Electronic energy + Delta-G solvation = -23228.027246 eV Core-core repulsion = 19854.084741 eV Total energy + Delta-G solvation = -3373.942505 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.92967 -39.36796 -37.00973 -34.82252 -33.74064 -32.30885 -31.87379 -31.04522 -28.49347 -28.13036 -25.81815 -23.95358 -23.50846 -22.14759 -21.63313 -20.30276 -19.35461 -18.21212 -17.67280 -16.89883 -15.82549 -15.57015 -14.96755 -14.81945 -14.32146 -14.08396 -13.68516 -13.30628 -13.22446 -13.15868 -12.72332 -12.63798 -12.37759 -12.19517 -11.88247 -11.54591 -11.25830 -11.08118 -10.95408 -10.81356 -10.73732 -10.36899 -10.27745 -10.10605 -9.90142 -9.67173 -9.46567 -9.42820 -8.59887 -8.50183 -6.69135 -5.89227 -3.37938 0.91742 2.08608 2.80994 3.24769 3.32789 3.42894 3.45381 3.60877 4.16766 4.43017 4.62470 4.91025 5.05337 5.25469 5.35905 5.39873 5.55326 5.65278 5.80604 5.83573 6.02788 6.10034 6.15488 6.20486 6.33926 6.42445 6.50585 6.56017 6.64428 6.79589 6.86227 6.90053 7.14287 7.43569 7.53775 7.78049 7.81306 8.14992 8.38646 8.43561 9.15162 9.76094 10.32487 11.17452 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.006296 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.446599 B = 4445.965964 C = 5344.746723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.262 4.262 5 H 0.065 0.935 6 C 0.012 3.988 7 N -0.891 5.891 8 Si 0.894 3.106 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.175 3.825 13 H 0.102 0.898 14 C -0.144 4.144 15 C 0.100 3.900 16 N -0.681 5.681 17 C 0.593 3.407 18 O -0.530 6.530 19 C -0.078 4.078 20 O 0.122 5.878 21 N -0.346 5.346 22 C -0.020 4.020 23 C -0.134 4.134 24 C -0.082 4.082 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.033 0.967 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.254 0.746 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.418 0.582 37 H 0.195 0.805 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.511 0.172 6.039 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.392 4.392 5 H 0.083 0.917 6 C -0.188 4.188 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.200 1.200 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.067 3.933 13 H 0.119 0.881 14 C -0.203 4.203 15 C -0.025 4.025 16 N -0.331 5.331 17 C 0.376 3.624 18 O -0.409 6.409 19 C -0.144 4.144 20 O 0.049 5.951 21 N -0.045 5.045 22 C -0.198 4.198 23 C -0.139 4.139 24 C -0.139 4.139 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.256 0.744 37 H 0.212 0.788 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.474 0.487 5.575 12.766 hybrid contribution -0.220 0.677 -0.530 0.887 sum -11.694 1.164 5.045 12.788 Atomic orbital electron populations 1.22454 1.00084 0.99042 1.01474 1.20764 0.91606 0.87419 0.98829 1.43906 1.75961 1.08303 1.02263 1.19141 1.08600 1.18093 0.93367 0.91692 1.25140 0.94500 1.01289 0.97828 1.70009 1.07884 1.35908 1.39599 0.86355 0.77688 0.81614 0.81940 1.20014 1.21492 1.21727 1.20522 0.88742 0.99797 0.84210 0.88053 1.22013 1.01065 0.97925 0.99278 1.22345 0.87727 0.96448 0.96023 1.45973 1.10313 1.57402 1.19369 1.16574 0.81181 0.79495 0.85187 1.90791 1.82244 1.50922 1.16954 1.24291 0.98213 1.05053 0.86874 1.85032 1.27804 1.54624 1.27643 1.73785 0.92606 1.14343 1.23779 1.24953 1.02082 1.02889 0.89835 1.21588 0.92009 1.00988 0.99323 1.20269 1.00496 1.03322 0.89783 0.93235 0.93341 0.94782 0.94003 0.94440 0.93596 0.90190 0.94764 0.95074 0.92281 0.92203 0.74380 0.78786 0.90484 0.91127 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 9.87 37.16 0.37 -2.68 16 2 C 0.14 2.76 5.67 -4.04 -0.02 2.74 16 3 N -0.58 -12.81 1.85 -165.67 -0.31 -13.11 16 4 C -0.26 -6.47 9.26 -15.06 -0.14 -6.61 16 5 H 0.07 1.63 7.89 -52.48 -0.41 1.22 16 6 C 0.01 0.32 4.85 -17.43 -0.08 0.23 16 7 N -0.89 -23.40 10.60 55.49 0.59 -22.81 16 8 Si 0.89 20.50 29.59 -169.99 -5.03 15.47 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.17 3.62 1.92 -67.93 -0.13 3.48 16 13 H 0.10 2.40 6.04 -51.93 -0.31 2.09 16 14 C -0.14 -2.82 9.05 37.15 0.34 -2.48 16 15 C 0.10 1.81 4.34 -4.04 -0.02 1.79 16 16 N -0.68 -12.13 3.98 -61.36 -0.24 -12.37 16 17 C 0.59 10.21 7.58 -12.48 -0.09 10.11 16 18 O -0.53 -9.84 15.12 5.29 0.08 -9.76 16 19 C -0.08 -1.23 7.29 -36.31 -0.26 -1.49 16 20 O 0.12 2.00 11.04 15.55 0.17 2.17 16 21 N -0.35 -5.31 12.04 30.46 0.37 -4.94 16 22 C -0.02 -0.25 12.14 -17.13 -0.21 -0.45 16 23 C -0.13 -1.78 6.37 -103.99 -0.66 -2.44 16 24 C -0.08 -0.87 9.95 36.00 0.36 -0.52 16 25 H 0.05 0.89 4.99 -51.93 -0.26 0.63 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 29 H 0.04 0.70 6.45 -51.93 -0.33 0.37 16 30 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 31 H 0.08 1.81 7.39 -51.93 -0.38 1.42 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.03 0.56 6.67 -51.93 -0.35 0.22 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.09 7.05 -51.93 -0.37 0.73 16 36 H 0.42 7.88 7.72 -40.82 -0.32 7.56 16 37 H 0.20 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 1.11 6.74 -51.93 -0.35 0.76 16 LS Contribution 328.09 15.07 4.94 4.94 Total: -1.00 -27.01 328.09 -5.59 -32.60 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.60 Total: 6.12 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -0.56 Total: 1.68 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.40 Total: -53.23 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.25 Total: -7.59 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.01 -5.59 -32.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156161893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.017 kcal (2) G-P(sol) polarization free energy of solvation -27.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds