Wall clock time and date at job start Tue Mar 31 2020 05:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47604 * 2 1 4 4 C 1.36943 * 119.99846 * 84.27292 * 3 2 1 5 5 H 1.07999 * 119.99904 * 28.84108 * 4 3 2 6 6 C 1.38809 * 119.99706 * 209.11638 * 4 3 2 7 7 N 1.31618 * 120.00334 * 18.63280 * 6 4 3 8 8 Si 1.86797 * 119.99733 * 198.63168 * 6 4 3 9 9 H 1.48503 * 109.47368 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47160 * 120.00179 * 8 6 4 11 11 H 1.48498 * 109.47041 * 239.99906 * 8 6 4 12 12 C 1.46498 * 120.00095 * 264.27653 * 3 2 1 13 13 H 1.09003 * 109.46860 * 183.52441 * 12 3 2 14 14 C 1.52998 * 109.47430 * 63.52157 * 12 3 2 15 15 C 1.52998 * 109.46760 * 303.51820 * 12 3 2 16 16 N 1.46499 * 109.47758 * 305.00230 * 15 12 3 17 17 C 1.34770 * 120.00144 * 180.02562 * 16 15 12 18 18 O 1.21500 * 120.00375 * 359.97438 * 17 16 15 19 19 C 1.48333 * 120.00087 * 180.02562 * 17 16 15 20 20 N 1.30988 * 126.93468 * 0.02562 * 19 17 16 21 21 O 1.20908 * 111.43462 * 179.97438 * 20 19 17 22 22 C 1.34011 * 111.84869 * 359.97438 * 21 20 19 23 23 C 1.35317 * 106.67139 * 359.74919 * 22 21 20 24 24 C 1.50695 * 128.04355 * 180.23706 * 23 22 21 25 25 H 1.08999 * 109.47057 * 59.99877 * 1 2 3 26 26 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46770 * 299.99864 * 1 2 3 28 28 H 1.09001 * 109.47350 * 239.99686 * 2 1 3 29 29 H 1.09001 * 109.46755 * 120.00568 * 2 1 3 30 30 H 0.96997 * 119.99939 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.46874 * 300.00271 * 14 12 3 32 32 H 1.08999 * 109.46541 * 59.99998 * 14 12 3 33 33 H 1.08991 * 109.47194 * 179.97438 * 14 12 3 34 34 H 1.09004 * 109.46866 * 65.00698 * 15 12 3 35 35 H 1.09006 * 109.47115 * 184.99975 * 15 12 3 36 36 H 0.97000 * 119.99579 * 359.97438 * 16 15 12 37 37 H 1.08004 * 126.66478 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.47161 * 270.16698 * 24 23 22 39 39 H 1.09001 * 109.46997 * 30.16044 * 24 23 22 40 40 H 1.08993 * 109.47380 * 150.16290 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1351 2.0661 1.1801 5 1 2.3293 1.5312 2.0980 6 6 1.9982 3.4473 1.1972 7 7 1.4075 4.0626 0.1948 8 14 2.6522 4.4327 2.6431 9 1 3.2675 3.5116 3.6322 10 1 3.6735 5.3980 2.1628 11 1 1.5352 5.1720 3.2840 12 6 2.3819 2.0295 -1.2624 13 1 2.7793 3.0239 -1.0588 14 6 1.1418 2.1479 -2.1506 15 6 3.4441 1.1927 -1.9781 16 7 4.5832 0.9789 -1.0820 17 6 5.6458 0.2641 -1.5016 18 8 5.6590 -0.2035 -2.6230 19 6 6.7989 0.0471 -0.5941 20 7 6.9272 0.4845 0.6339 21 8 7.9819 0.1432 1.1166 22 6 8.7118 -0.5821 0.2580 23 6 7.9857 -0.6840 -0.8792 24 6 8.3507 -1.4017 -2.1530 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3122 5.0279 0.2067 31 1 0.7445 1.1534 -2.3541 32 1 0.3853 2.7441 -1.6406 33 1 1.4122 2.6307 -3.0896 34 1 3.0183 0.2298 -2.2607 35 1 3.7790 1.7183 -2.8724 36 1 4.5728 1.3525 -0.1869 37 1 9.6880 -1.0069 0.4401 38 1 8.8806 -0.7180 -2.8162 39 1 8.9919 -2.2518 -1.9200 40 1 7.4438 -1.7544 -2.6440 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156214869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:07 Heat of formation + Delta-G solvation = 41.462522 kcal Electronic energy + Delta-G solvation = -22896.065308 eV Core-core repulsion = 19522.081615 eV Total energy + Delta-G solvation = -3373.983692 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.03465 -39.23795 -36.96342 -34.65174 -33.91585 -32.32815 -31.83776 -30.71995 -28.32368 -28.22562 -26.12564 -24.10256 -23.48173 -21.66329 -21.57814 -20.17176 -19.37079 -18.05718 -17.72433 -16.93878 -16.24794 -15.51310 -14.93173 -14.69057 -14.29765 -14.08929 -13.66762 -13.38716 -13.29520 -13.13981 -12.73370 -12.41283 -12.37253 -11.93995 -11.62136 -11.43789 -11.32244 -11.29082 -11.02617 -10.80105 -10.51154 -10.26525 -10.19438 -9.91647 -9.79968 -9.59460 -9.51326 -9.46698 -8.56658 -8.47926 -6.74127 -5.86111 -3.29324 1.27003 1.70182 3.10609 3.34459 3.42180 3.44154 3.46409 3.46643 4.13043 4.45747 4.71339 4.86285 5.08074 5.29601 5.37057 5.48653 5.56581 5.62019 5.75995 5.86485 6.07724 6.12553 6.19286 6.29087 6.42744 6.48613 6.54417 6.68927 6.70154 6.77162 6.94236 6.99243 7.26931 7.50193 7.60271 7.79990 7.90177 8.17331 8.41067 8.52760 9.16982 9.79181 10.32997 11.21127 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.005885 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.773767 B = 4757.011367 C = 5732.549790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 N -0.583 5.583 4 C -0.256 4.256 5 H 0.067 0.933 6 C 0.007 3.993 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.291 1.291 12 C 0.176 3.824 13 H 0.104 0.896 14 C -0.142 4.142 15 C 0.100 3.900 16 N -0.684 5.684 17 C 0.587 3.413 18 O -0.541 6.541 19 C -0.026 4.026 20 N -0.321 5.321 21 O 0.123 5.877 22 C -0.077 4.077 23 C -0.153 4.153 24 C -0.079 4.079 25 H 0.050 0.950 26 H 0.027 0.973 27 H 0.052 0.948 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.253 0.747 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.030 0.970 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.418 0.582 37 H 0.220 0.780 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.697 -8.499 -2.649 14.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 N -0.305 5.305 4 C -0.386 4.386 5 H 0.084 0.916 6 C -0.192 4.192 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.218 1.218 12 C 0.069 3.931 13 H 0.121 0.879 14 C -0.202 4.202 15 C -0.025 4.025 16 N -0.334 5.334 17 C 0.370 3.630 18 O -0.419 6.419 19 C -0.185 4.185 20 N -0.021 5.021 21 O 0.047 5.953 22 C -0.158 4.158 23 C -0.158 4.158 24 C -0.136 4.136 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.255 0.745 37 H 0.237 0.763 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.789 -7.900 -2.685 13.639 hybrid contribution 0.540 0.378 0.611 0.899 sum 11.329 -7.522 -2.074 13.756 Atomic orbital electron populations 1.22388 0.99687 0.98359 1.02122 1.20795 0.91997 0.87571 0.98092 1.44014 1.73761 1.09758 1.02961 1.19199 1.42821 0.89280 0.87274 0.91557 1.25023 0.98882 0.97824 0.97449 1.70018 1.42973 1.08463 1.32275 0.86332 0.78443 0.80239 0.82459 1.20150 1.21581 1.21811 1.20536 0.90906 0.96661 0.85042 0.87856 1.22112 1.00472 0.99591 0.97983 1.22253 0.86828 1.00852 0.92596 1.45891 1.16639 1.51458 1.19439 1.16923 0.81089 0.79614 0.85342 1.90719 1.80572 1.51314 1.19292 1.23644 0.98893 1.02963 0.93046 1.74298 1.00647 1.16670 1.10446 1.84806 1.21199 1.51135 1.38155 1.25739 1.00293 1.00126 0.89624 1.21358 0.93154 1.02391 0.98879 1.20186 1.03085 0.98622 0.91755 0.93127 0.95349 0.92870 0.94510 0.94592 0.93682 0.95116 0.89994 0.95108 0.92430 0.92301 0.74476 0.76334 0.90743 0.91298 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 10.02 37.16 0.37 -2.88 16 2 C 0.14 2.93 5.73 -4.04 -0.02 2.90 16 3 N -0.58 -13.40 1.84 -165.67 -0.30 -13.70 16 4 C -0.26 -6.56 9.50 -15.06 -0.14 -6.70 16 5 H 0.07 1.73 7.90 -52.49 -0.41 1.32 16 6 C 0.01 0.20 4.84 -17.43 -0.08 0.11 16 7 N -0.89 -24.02 10.24 55.49 0.57 -23.45 16 8 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 C 0.18 3.85 1.93 -67.93 -0.13 3.72 16 13 H 0.10 2.58 5.93 -51.93 -0.31 2.27 16 14 C -0.14 -2.95 8.25 37.16 0.31 -2.64 16 15 C 0.10 1.96 4.85 -4.04 -0.02 1.94 16 16 N -0.68 -13.41 5.39 -61.09 -0.33 -13.74 16 17 C 0.59 11.09 7.85 -12.11 -0.10 11.00 16 18 O -0.54 -10.88 15.34 5.37 0.08 -10.80 16 19 C -0.03 -0.43 7.19 -82.52 -0.59 -1.02 16 20 N -0.32 -5.33 11.84 33.30 0.39 -4.93 16 21 O 0.12 1.63 11.18 17.26 0.19 1.83 16 22 C -0.08 -0.77 12.24 29.69 0.36 -0.40 16 23 C -0.15 -1.96 6.34 -104.12 -0.66 -2.62 16 24 C -0.08 -0.84 10.01 36.00 0.36 -0.48 16 25 H 0.05 1.01 6.03 -51.93 -0.31 0.70 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.04 0.72 6.35 -51.93 -0.33 0.39 16 29 H 0.04 0.75 8.09 -51.93 -0.42 0.33 16 30 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 31 H 0.03 0.59 6.50 -51.93 -0.34 0.25 16 32 H 0.08 1.94 7.22 -51.93 -0.37 1.56 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 1.13 6.76 -51.93 -0.35 0.78 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.42 8.70 7.84 -40.82 -0.32 8.38 16 37 H 0.22 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 1.12 6.89 -51.93 -0.36 0.76 16 LS Contribution 330.22 15.07 4.98 4.98 Total: -1.00 -28.90 330.22 -5.42 -34.32 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.62 Total: 6.53 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.35 Total: 2.92 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.33 Total: -55.83 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.28 Total: -8.97 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.90 -5.42 -34.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156214869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.784 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds