Wall clock time and date at job start Tue Mar 31 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47604 * 2 1 4 4 C 1.36943 * 119.99846 * 84.27292 * 3 2 1 5 5 H 1.07999 * 119.99904 * 28.84108 * 4 3 2 6 6 C 1.38809 * 119.99706 * 209.11638 * 4 3 2 7 7 N 1.31618 * 120.00334 * 18.63280 * 6 4 3 8 8 Si 1.86797 * 119.99733 * 198.63168 * 6 4 3 9 9 H 1.48503 * 109.47368 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47160 * 120.00179 * 8 6 4 11 11 H 1.48498 * 109.47041 * 239.99906 * 8 6 4 12 12 C 1.46498 * 120.00095 * 264.27653 * 3 2 1 13 13 H 1.09003 * 109.46860 * 183.52441 * 12 3 2 14 14 C 1.52998 * 109.47430 * 63.52157 * 12 3 2 15 15 C 1.52998 * 109.46760 * 303.51820 * 12 3 2 16 16 N 1.46499 * 109.47758 * 305.00230 * 15 12 3 17 17 C 1.34770 * 120.00144 * 180.02562 * 16 15 12 18 18 O 1.21500 * 120.00375 * 359.97438 * 17 16 15 19 19 C 1.48333 * 120.00087 * 180.02562 * 17 16 15 20 20 N 1.30988 * 126.93468 * 0.02562 * 19 17 16 21 21 O 1.20908 * 111.43462 * 179.97438 * 20 19 17 22 22 C 1.34011 * 111.84869 * 359.97438 * 21 20 19 23 23 C 1.35317 * 106.67139 * 359.74919 * 22 21 20 24 24 C 1.50695 * 128.04355 * 180.23706 * 23 22 21 25 25 H 1.08999 * 109.47057 * 59.99877 * 1 2 3 26 26 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46770 * 299.99864 * 1 2 3 28 28 H 1.09001 * 109.47350 * 239.99686 * 2 1 3 29 29 H 1.09001 * 109.46755 * 120.00568 * 2 1 3 30 30 H 0.96997 * 119.99939 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.46874 * 300.00271 * 14 12 3 32 32 H 1.08999 * 109.46541 * 59.99998 * 14 12 3 33 33 H 1.08991 * 109.47194 * 179.97438 * 14 12 3 34 34 H 1.09004 * 109.46866 * 65.00698 * 15 12 3 35 35 H 1.09006 * 109.47115 * 184.99975 * 15 12 3 36 36 H 0.97000 * 119.99579 * 359.97438 * 16 15 12 37 37 H 1.08004 * 126.66478 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.47161 * 270.16698 * 24 23 22 39 39 H 1.09001 * 109.46997 * 30.16044 * 24 23 22 40 40 H 1.08993 * 109.47380 * 150.16290 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1351 2.0661 1.1801 5 1 2.3293 1.5312 2.0980 6 6 1.9982 3.4473 1.1972 7 7 1.4075 4.0626 0.1948 8 14 2.6522 4.4327 2.6431 9 1 3.2675 3.5116 3.6322 10 1 3.6735 5.3980 2.1628 11 1 1.5352 5.1720 3.2840 12 6 2.3819 2.0295 -1.2624 13 1 2.7793 3.0239 -1.0588 14 6 1.1418 2.1479 -2.1506 15 6 3.4441 1.1927 -1.9781 16 7 4.5832 0.9789 -1.0820 17 6 5.6458 0.2641 -1.5016 18 8 5.6590 -0.2035 -2.6230 19 6 6.7989 0.0471 -0.5941 20 7 6.9272 0.4845 0.6339 21 8 7.9819 0.1432 1.1166 22 6 8.7118 -0.5821 0.2580 23 6 7.9857 -0.6840 -0.8792 24 6 8.3507 -1.4017 -2.1530 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3122 5.0279 0.2067 31 1 0.7445 1.1534 -2.3541 32 1 0.3853 2.7441 -1.6406 33 1 1.4122 2.6307 -3.0896 34 1 3.0183 0.2298 -2.2607 35 1 3.7790 1.7183 -2.8724 36 1 4.5728 1.3525 -0.1869 37 1 9.6880 -1.0069 0.4401 38 1 8.8806 -0.7180 -2.8162 39 1 8.9919 -2.2518 -1.9200 40 1 7.4438 -1.7544 -2.6440 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156214869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:06 Heat of formation + Delta-G solvation = 23.294091 kcal Electronic energy + Delta-G solvation = -22896.853150 eV Core-core repulsion = 19522.081615 eV Total energy + Delta-G solvation = -3374.771535 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.13256 -40.74221 -38.68899 -35.71234 -35.48144 -33.81568 -33.42997 -32.33315 -30.14233 -29.14989 -27.61162 -25.93552 -24.89224 -23.32752 -22.63710 -21.47959 -21.10107 -19.39273 -18.84680 -18.67573 -17.52968 -17.09255 -16.60354 -16.49109 -15.76271 -15.56890 -15.26227 -14.65261 -14.43549 -14.18909 -14.16042 -14.01896 -13.72175 -13.32163 -13.29073 -13.12796 -13.03800 -12.86492 -12.66480 -12.32812 -12.24171 -12.11538 -11.78209 -11.34371 -11.33642 -11.30703 -11.27063 -10.48976 -10.37596 -10.08640 -8.64032 -7.85651 -5.29115 0.13098 0.75595 1.43914 1.49615 1.57031 1.97553 2.07390 2.36796 2.51918 2.96818 3.29359 3.57619 3.65124 3.94629 4.11579 4.17610 4.39945 4.46576 4.49074 4.66724 4.78475 4.80884 4.84858 4.86198 4.86490 4.97182 4.99362 5.04947 5.13907 5.28869 5.32861 5.41084 5.56432 5.70831 5.72379 5.88822 6.40386 6.45944 6.96343 7.14507 7.20747 7.89661 8.38423 9.19192 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.005885 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.773767 B = 4757.011367 C = 5732.549790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.141 3.859 3 N -0.591 5.591 4 C -0.256 4.256 5 H 0.058 0.942 6 C -0.033 4.033 7 N -0.912 5.912 8 Si 0.947 3.053 9 H -0.273 1.273 10 H -0.294 1.294 11 H -0.296 1.296 12 C 0.181 3.819 13 H 0.071 0.929 14 C -0.131 4.131 15 C 0.112 3.888 16 N -0.691 5.691 17 C 0.586 3.414 18 O -0.559 6.559 19 C -0.061 4.061 20 N -0.355 5.355 21 O 0.132 5.868 22 C -0.040 4.040 23 C -0.171 4.171 24 C -0.075 4.075 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.029 0.971 28 H 0.049 0.951 29 H 0.033 0.967 30 H 0.248 0.752 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.411 0.589 37 H 0.280 0.720 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.757 -10.100 -2.463 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.015 3.985 3 N -0.313 5.313 4 C -0.387 4.387 5 H 0.076 0.924 6 C -0.230 4.230 7 N -0.557 5.557 8 Si 0.777 3.223 9 H -0.198 1.198 10 H -0.221 1.221 11 H -0.223 1.223 12 C 0.074 3.926 13 H 0.089 0.911 14 C -0.190 4.190 15 C -0.013 4.013 16 N -0.340 5.340 17 C 0.371 3.629 18 O -0.437 6.437 19 C -0.218 4.218 20 N -0.054 5.054 21 O 0.053 5.947 22 C -0.120 4.120 23 C -0.176 4.176 24 C -0.132 4.132 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.247 0.753 37 H 0.296 0.704 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.829 -9.516 -2.514 16.170 hybrid contribution 0.000 0.792 0.577 0.980 sum 12.829 -8.724 -1.937 15.635 Atomic orbital electron populations 1.22244 0.98625 0.99946 1.00631 1.20864 0.92748 0.86280 0.98566 1.44090 1.74174 1.10401 1.02631 1.19284 1.41915 0.89561 0.87917 0.92431 1.25520 0.99604 0.98566 0.99306 1.70136 1.44054 1.08085 1.33465 0.85519 0.77470 0.78896 0.80403 1.19781 1.22077 1.22294 1.20391 0.91788 0.95390 0.85042 0.91078 1.21940 0.99073 0.99928 0.98057 1.22027 0.86446 1.00459 0.92402 1.45911 1.17101 1.52036 1.18992 1.17238 0.81373 0.78738 0.85545 1.90694 1.81075 1.51871 1.20108 1.23585 0.99648 1.05289 0.93326 1.74306 1.02308 1.17992 1.10748 1.84758 1.20542 1.50869 1.38493 1.26754 1.00890 0.97050 0.87321 1.21721 0.92254 1.02794 1.00828 1.20213 1.02464 0.99799 0.90715 0.93671 0.92181 0.95199 0.93240 0.94837 0.94260 0.93722 0.93051 0.93411 0.92109 0.91784 0.75310 0.70419 0.90195 0.87532 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.94 10.02 71.98 0.72 -5.22 16 2 C 0.14 5.75 5.73 86.38 0.49 6.24 16 3 N -0.59 -27.42 1.84 -678.05 -1.25 -28.67 16 4 C -0.26 -13.33 9.50 84.03 0.80 -12.53 16 5 H 0.06 3.05 7.90 -2.91 -0.02 3.03 16 6 C -0.03 -1.74 4.84 84.86 0.41 -1.33 16 7 N -0.91 -50.20 10.24 21.65 0.22 -49.98 16 8 Si 0.95 44.13 29.59 68.60 2.03 46.16 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 11 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 12 C 0.18 8.01 1.93 44.99 0.09 8.10 16 13 H 0.07 3.65 5.93 -2.39 -0.01 3.64 16 14 C -0.13 -5.41 8.25 71.98 0.59 -4.82 16 15 C 0.11 4.40 4.85 86.38 0.42 4.82 16 16 N -0.69 -27.52 5.39 -465.50 -2.51 -30.03 16 17 C 0.59 22.35 7.85 86.93 0.68 23.03 16 18 O -0.56 -22.58 15.34 -3.72 -0.06 -22.64 16 19 C -0.06 -2.00 7.19 42.96 0.31 -1.69 16 20 N -0.36 -11.56 11.84 -49.51 -0.59 -12.15 16 21 O 0.13 3.19 11.18 71.93 0.80 3.99 16 22 C -0.04 -0.63 12.24 67.15 0.82 0.19 16 23 C -0.17 -3.97 6.34 -19.54 -0.12 -4.09 16 24 C -0.08 -1.40 10.01 71.23 0.71 -0.69 16 25 H 0.04 1.76 6.03 -2.39 -0.01 1.74 16 26 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 28 H 0.05 1.89 6.35 -2.39 -0.02 1.87 16 29 H 0.03 1.37 8.09 -2.39 -0.02 1.35 16 30 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 31 H 0.04 1.69 6.50 -2.39 -0.02 1.67 16 32 H 0.05 2.45 7.22 -2.39 -0.02 2.43 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 2.35 6.76 -2.38 -0.02 2.33 16 35 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.41 17.58 7.84 -92.71 -0.73 16.86 16 37 H 0.28 0.67 8.06 -2.91 -0.02 0.64 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 1.46 6.89 -2.39 -0.02 1.45 16 Total: -1.00 -64.76 330.22 4.92 -59.84 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.33 Total: 21.45 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 5.93 Total: 12.01 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -4.12 Total: -120.82 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.75 Total: -18.65 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -64.76 4.92 -59.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156214869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.134 kcal (2) G-P(sol) polarization free energy of solvation -64.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds