Wall clock time and date at job start Tue Mar 31 2020 05:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47293 * 2 1 4 4 C 1.50702 * 109.46815 * 119.99658 * 2 1 3 5 5 C 1.35315 * 126.66451 * 120.28146 * 4 2 1 6 6 C 1.42270 * 103.92336 * 180.08740 * 5 4 2 7 7 C 1.48326 * 126.94185 * 179.90952 * 6 5 4 8 8 O 1.21494 * 119.99985 * 359.71397 * 7 6 5 9 9 N 1.34784 * 120.00252 * 179.71394 * 7 6 5 10 10 C 1.46493 * 119.99864 * 179.72903 * 9 7 6 11 11 C 1.53001 * 109.47084 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47182 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.46744 * 179.97438 * 12 11 10 14 14 C 1.36936 * 119.99659 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00168 * 359.97438 * 14 13 12 16 16 C 1.38817 * 120.00011 * 180.02562 * 14 13 12 17 17 N 1.31617 * 120.00186 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00084 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46916 * 59.99999 * 18 16 14 20 20 H 1.48500 * 109.46770 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46938 * 299.99671 * 18 16 14 22 22 N 1.30992 * 106.12221 * 359.65502 * 6 5 4 23 23 O 1.20902 * 111.43743 * 0.22153 * 22 6 5 24 24 H 1.09008 * 109.46889 * 300.00789 * 1 2 3 25 25 H 1.09001 * 109.46847 * 59.99750 * 1 2 3 26 26 H 1.08989 * 109.47482 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47317 * 239.99544 * 2 1 3 28 28 H 1.09002 * 109.46952 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46694 * 299.99792 * 3 2 1 30 30 H 1.09002 * 109.47140 * 59.99850 * 3 2 1 31 31 H 1.08002 * 128.04093 * 359.97438 * 5 4 2 32 32 H 0.97000 * 119.99339 * 0.02562 * 9 7 6 33 33 H 1.09007 * 109.47196 * 299.99538 * 10 9 7 34 34 H 1.09006 * 109.47678 * 59.99732 * 10 9 7 35 35 H 1.09007 * 109.46593 * 299.99743 * 11 10 9 36 36 H 1.08993 * 109.47372 * 59.99485 * 11 10 9 37 37 H 1.08993 * 109.47057 * 299.99535 * 12 11 10 38 38 H 1.09001 * 109.47095 * 59.99863 * 12 11 10 39 39 H 0.96998 * 120.00761 * 0.02562 * 13 12 11 40 40 H 0.96993 * 120.00385 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8176 -1.8118 1.2637 6 6 2.9917 -2.0664 2.6526 7 6 3.7722 -3.1686 3.2659 8 8 4.3427 -3.9754 2.5590 9 7 3.8485 -3.2752 4.6073 10 6 4.6144 -4.3672 5.2129 11 6 4.5394 -4.2587 6.7372 12 6 5.3388 -5.3996 7.3698 13 7 5.2674 -5.2952 8.8293 14 6 5.9121 -6.2140 9.6137 15 1 6.4729 -7.0158 9.1565 16 6 5.8441 -6.1154 10.9967 17 7 5.1603 -5.1386 11.5541 18 14 6.7230 -7.3692 12.0669 19 1 8.1788 -7.3345 11.7759 20 1 6.4957 -7.0444 13.4980 21 1 6.1925 -8.7257 11.7774 22 7 2.3282 -1.1276 3.2805 23 8 1.7926 -0.3707 2.5046 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.2176 -2.3693 0.4297 32 1 3.3926 -2.6312 5.1716 33 1 4.1970 -5.3231 4.8962 34 1 5.6548 -4.3017 4.8944 35 1 4.9565 -3.3028 7.0543 36 1 3.4990 -4.3244 7.0554 37 1 4.9213 -6.3552 7.0527 38 1 6.3793 -5.3342 7.0516 39 1 4.7635 -4.5753 9.2401 40 1 5.1124 -5.0700 12.5204 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163469081.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:22 Heat of formation + Delta-G solvation = 17.970332 kcal Electronic energy + Delta-G solvation = -20686.807375 eV Core-core repulsion = 17311.804985 eV Total energy + Delta-G solvation = -3375.002390 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.40188 -39.70859 -36.59416 -36.11825 -34.46915 -34.19011 -32.02196 -31.06415 -29.58866 -27.72623 -26.11517 -24.45182 -23.54677 -22.79928 -21.96214 -21.22496 -19.80011 -18.07558 -17.71431 -17.18765 -16.79804 -16.11423 -15.70893 -15.53911 -14.85842 -14.57082 -14.39315 -13.96914 -13.88053 -13.78730 -13.27684 -13.02652 -12.74396 -12.52761 -12.21764 -11.94350 -11.83773 -11.68727 -11.40822 -11.00222 -10.93248 -10.83047 -10.75116 -10.62178 -10.39769 -10.07260 -9.82279 -9.70772 -9.19639 -8.87441 -6.93645 -5.76616 -3.05868 0.83525 1.35559 2.55313 2.81926 2.98357 3.45095 3.48938 3.50353 3.69171 3.99705 4.32175 4.47998 4.58926 4.60959 4.73911 4.93797 5.02595 5.09052 5.11189 5.26826 5.26982 5.31372 5.41095 5.54542 5.57295 5.59168 5.67051 5.70237 5.89909 6.02379 6.16786 6.30603 6.31061 6.77445 6.81768 7.24088 7.69770 7.70608 7.93382 8.42162 9.53115 10.10105 10.44803 11.46287 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.049296 B = 0.002201 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.863485 B =12718.243694 C =13084.429037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.012 4.012 3 C -0.152 4.152 4 C -0.027 4.027 5 C -0.181 4.181 6 C -0.023 4.023 7 C 0.595 3.405 8 O -0.524 6.524 9 N -0.710 5.710 10 C 0.122 3.878 11 C -0.139 4.139 12 C 0.157 3.843 13 N -0.734 5.734 14 C -0.241 4.241 15 H 0.071 0.929 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.910 3.090 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.286 1.286 22 N -0.331 5.331 23 O 0.126 5.874 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.181 0.819 32 H 0.408 0.592 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.608 13.611 -26.298 31.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 C -0.209 4.209 4 C -0.091 4.091 5 C -0.204 4.204 6 C -0.182 4.182 7 C 0.379 3.621 8 O -0.399 6.399 9 N -0.361 5.361 10 C -0.001 4.001 11 C -0.177 4.177 12 C 0.029 3.971 13 N -0.378 5.378 14 C -0.372 4.372 15 H 0.089 0.911 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 N -0.031 5.031 23 O 0.050 5.950 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.124 0.876 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.198 0.802 32 H 0.243 0.757 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.217 0.783 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.233 13.085 -25.389 30.017 hybrid contribution 0.350 -0.505 0.429 0.749 sum -8.883 12.580 -24.960 29.328 Atomic orbital electron populations 1.21909 0.92926 1.02911 1.03199 1.19834 0.96896 0.96207 0.90159 1.21910 1.01774 0.94065 1.03199 1.24515 1.00073 0.97245 0.87219 1.22445 1.02642 0.98704 0.96579 1.23546 1.03124 0.98597 0.92965 1.16870 0.80006 0.82755 0.82501 1.90806 1.45732 1.41592 1.61760 1.45967 1.52696 1.31616 1.05810 1.21484 0.96147 0.89125 0.93387 1.21962 1.02186 1.01365 0.92183 1.20512 0.96353 0.94353 0.85892 1.42329 1.62327 1.34018 0.99127 1.19203 1.24450 1.05359 0.88229 0.91116 1.24768 1.00904 0.98770 0.96648 1.69648 1.45626 1.33073 1.09953 0.86228 0.79316 0.80796 0.79613 1.21218 1.21663 1.21226 1.74207 1.09418 1.02622 1.16874 1.84758 1.54200 1.42478 1.13602 0.91606 0.91122 0.91952 0.87649 0.91954 0.91114 0.91611 0.80206 0.75740 0.90847 0.90811 0.91127 0.91137 0.95978 0.95978 0.78266 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.18 37.16 0.34 -0.25 16 2 C -0.01 -0.05 3.34 -91.77 -0.31 -0.36 16 3 C -0.15 -0.59 9.18 37.16 0.34 -0.25 16 4 C -0.03 -0.22 5.98 -35.35 -0.21 -0.43 16 5 C -0.18 -1.74 10.91 -39.08 -0.43 -2.17 16 6 C -0.02 -0.28 7.19 -82.53 -0.59 -0.88 16 7 C 0.60 8.52 7.85 -12.11 -0.10 8.43 16 8 O -0.52 -8.84 16.95 5.37 0.09 -8.75 16 9 N -0.71 -9.46 5.55 -61.09 -0.34 -9.80 16 10 C 0.12 1.73 5.67 -4.04 -0.02 1.70 16 11 C -0.14 -2.21 5.44 -26.73 -0.15 -2.35 16 12 C 0.16 3.18 6.26 -4.04 -0.03 3.16 16 13 N -0.73 -18.98 5.60 -59.91 -0.34 -19.32 16 14 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 15 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 16 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -28.65 13.06 55.49 0.72 -27.92 16 18 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 N -0.33 -3.94 11.84 33.29 0.39 -3.55 16 23 O 0.13 1.25 11.18 17.24 0.19 1.44 16 24 H 0.06 0.29 8.14 -51.92 -0.42 -0.14 16 25 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.11 0.32 8.12 -51.93 -0.42 -0.11 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.18 1.43 8.06 -52.49 -0.42 1.00 16 32 H 0.41 4.91 8.23 -40.82 -0.34 4.57 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.38 10.34 7.67 -40.82 -0.31 10.03 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -33.57 347.47 -6.56 -40.13 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.11 Total: 5.83 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.39 Total: -0.98 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: 0.44 Total: -60.59 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.28 Total: -7.31 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.57 -6.56 -40.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163469081.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.101 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds