Wall clock time and date at job start Tue Mar 31 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47224 * 2 1 4 4 C 1.35595 * 117.00216 * 179.97438 * 3 2 1 5 5 N 1.32706 * 120.48649 * 359.97438 * 4 3 2 6 6 C 1.32457 * 120.70327 * 180.02562 * 5 4 3 7 7 N 1.38620 * 119.13961 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00450 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47383 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.46767 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46779 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00204 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99935 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00127 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99973 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47183 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47344 * 120.00071 * 15 13 11 18 18 H 1.48500 * 109.46657 * 239.99750 * 15 13 11 19 19 N 1.32391 * 121.72435 * 0.02562 * 6 5 4 20 20 C 1.32524 * 120.92363 * 359.70123 * 19 6 5 21 21 C 1.38557 * 119.20232 * 0.56701 * 20 19 6 22 22 O 1.36120 * 120.78889 * 179.71919 * 21 20 19 23 23 C 1.42905 * 116.99839 * 359.72627 * 22 21 20 24 24 H 1.09002 * 109.47317 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47159 * 300.00341 * 1 2 3 26 26 H 1.09004 * 109.47190 * 59.99366 * 1 2 3 27 27 H 1.09001 * 109.46901 * 240.00584 * 2 1 3 28 28 H 1.08997 * 109.47079 * 119.99990 * 2 1 3 29 29 H 0.97008 * 120.00157 * 0.02562 * 7 6 5 30 30 H 1.09003 * 109.47169 * 300.00659 * 8 7 6 31 31 H 1.09003 * 109.46612 * 60.00309 * 8 7 6 32 32 H 1.08997 * 109.47029 * 299.99924 * 9 8 7 33 33 H 1.09004 * 109.46789 * 60.00101 * 9 8 7 34 34 H 1.08997 * 109.47251 * 299.99748 * 10 9 8 35 35 H 1.08998 * 109.46762 * 60.00590 * 10 9 8 36 36 H 0.97002 * 120.00112 * 179.97438 * 14 13 11 37 37 H 1.08003 * 120.39940 * 180.31306 * 20 19 6 38 38 H 1.09001 * 109.47103 * 180.02562 * 23 22 21 39 39 H 1.09004 * 109.47054 * 299.99787 * 23 22 21 40 40 H 1.09000 * 109.47187 * 59.99843 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3506 1.5250 0.0005 5 7 4.1679 0.4795 0.0016 6 6 5.4817 0.6481 0.0026 7 7 6.3054 -0.4669 0.0042 8 6 7.7611 -0.3024 0.0059 9 6 8.4299 -1.6785 0.0068 10 6 9.9503 -1.5065 0.0092 11 6 10.6091 -2.8618 0.0107 12 1 10.0040 -3.7564 0.0096 13 6 11.9843 -2.9599 0.0136 14 7 12.7212 -1.8706 0.0145 15 14 12.8009 -4.6400 0.0147 16 1 11.7582 -5.6972 0.0128 17 1 13.6495 -4.7788 -1.1960 18 1 13.6444 -4.7794 1.2289 19 7 6.0289 1.8536 0.0032 20 6 5.2751 2.9436 -0.0032 21 6 3.8959 2.8118 0.0014 22 8 3.0910 3.9095 0.0008 23 6 3.7342 5.1856 0.0014 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 5.9178 -1.3562 0.0041 30 1 8.0655 0.2487 -0.8839 31 1 8.0632 0.2494 0.8961 32 1 8.1256 -2.2298 0.8964 33 1 8.1277 -2.2299 -0.8836 34 1 10.2550 -0.9550 -0.8802 35 1 10.2521 -0.9553 0.8998 36 1 13.6888 -1.9395 0.0168 37 1 5.7305 3.9229 -0.0078 38 1 2.9801 5.9726 0.0013 39 1 4.3559 5.2787 0.8919 40 1 4.3573 5.2788 -0.8881 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:59 Heat of formation + Delta-G solvation = -31.517323 kcal Electronic energy + Delta-G solvation = -21187.919451 eV Core-core repulsion = 17810.771115 eV Total energy + Delta-G solvation = -3377.148336 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33961 -38.77972 -38.57092 -36.02688 -33.56012 -33.29896 -31.99432 -31.19032 -29.44798 -27.58033 -26.40669 -24.63268 -23.59848 -22.61215 -22.18335 -20.42317 -18.82272 -18.27940 -17.89485 -16.76197 -16.42992 -16.32184 -15.68909 -15.06042 -14.76299 -14.50372 -14.36274 -14.19559 -14.13061 -13.71395 -13.08368 -12.86513 -12.37421 -12.25014 -12.08200 -11.87459 -11.78820 -11.55744 -11.22420 -11.18280 -10.93072 -10.70784 -10.55229 -10.35165 -9.87337 -9.49146 -9.21978 -9.21231 -9.11483 -8.37599 -7.53291 -6.02301 -4.04988 1.06842 1.28090 2.60415 3.02217 3.24228 3.29993 3.37625 3.41543 3.85791 4.11275 4.44180 4.56099 4.68621 4.78404 4.83566 4.87122 4.96970 5.14362 5.17027 5.29390 5.33808 5.44722 5.59056 5.71554 5.76635 5.80605 5.80723 6.18281 6.62103 6.64026 6.75418 6.78390 6.97131 7.15899 7.27654 7.62443 7.63787 7.76296 7.96913 8.37529 8.40223 9.01898 9.59306 11.09058 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025110 B = 0.002833 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.822351 B = 9879.922489 C =10953.087193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.292 6.292 4 C 0.391 3.609 5 N -0.598 5.598 6 C 0.577 3.423 7 N -0.690 5.690 8 C 0.135 3.865 9 C -0.122 4.122 10 C 0.025 3.975 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.553 5.553 20 C 0.140 3.860 21 C -0.067 4.067 22 O -0.304 6.304 23 C 0.025 3.975 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.412 0.588 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.174 0.826 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.246 10.617 -0.045 24.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.196 6.196 4 C 0.200 3.800 5 N -0.338 5.338 6 C 0.220 3.780 7 N -0.327 5.327 8 C 0.012 3.988 9 C -0.160 4.160 10 C -0.012 4.012 11 C -0.559 4.559 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.281 5.281 20 C -0.025 4.025 21 C -0.120 4.120 22 O -0.216 6.216 23 C -0.070 4.070 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.248 0.752 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.191 0.809 38 H 0.118 0.882 39 H 0.072 0.928 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.756 10.114 -0.041 23.993 hybrid contribution 0.178 -0.579 0.001 0.605 sum -21.579 9.536 -0.039 23.592 Atomic orbital electron populations 1.21813 0.92873 1.02886 1.03341 1.22684 0.94836 0.80906 1.02847 1.86323 1.15746 1.30668 1.86856 1.18957 0.84344 0.86634 0.90039 1.67536 1.04832 1.32560 1.28907 1.18953 0.83408 0.86966 0.88682 1.44561 1.05956 1.04386 1.77750 1.21644 0.75474 0.99675 1.02027 1.21914 0.99778 0.93356 1.00989 1.19018 0.87157 0.97379 0.97671 1.21249 0.91407 0.92592 1.50695 0.92596 1.25025 0.97582 0.96572 0.95294 1.69974 1.05209 1.27401 1.50754 0.86532 0.79463 0.84386 0.77593 1.19755 1.20999 1.21005 1.67931 1.39417 0.97127 1.23617 1.22920 0.87628 0.98142 0.93809 1.19301 0.91159 0.86600 1.14940 1.86157 1.32854 1.12110 1.90477 1.23047 0.99540 0.83277 1.01170 0.90228 0.91627 0.91632 0.91364 0.91363 0.75150 0.91720 0.91719 0.92697 0.92693 0.96222 0.96223 0.92995 0.80939 0.88214 0.92790 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.73 16 2 C 0.06 0.64 6.06 37.16 0.23 0.86 16 3 O -0.29 -3.86 9.97 -31.30 -0.31 -4.17 16 4 C 0.39 5.67 7.54 -16.61 -0.13 5.54 16 5 N -0.60 -9.06 9.40 -13.86 -0.13 -9.19 16 6 C 0.58 9.26 8.43 -322.67 -2.72 6.54 16 7 N -0.69 -10.78 5.71 -62.28 -0.36 -11.14 16 8 C 0.13 2.34 5.65 -4.04 -0.02 2.32 16 9 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 10 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 11 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 15 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 N -0.55 -8.71 9.58 -13.86 -0.13 -8.85 16 20 C 0.14 1.80 10.30 -17.14 -0.18 1.62 16 21 C -0.07 -0.89 6.74 -38.90 -0.26 -1.16 16 22 O -0.30 -3.61 10.36 -32.95 -0.34 -3.95 16 23 C 0.03 0.18 9.84 101.05 0.99 1.17 16 24 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 28 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 29 H 0.41 5.80 8.59 -40.82 -0.35 5.45 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.17 1.60 6.44 -52.48 -0.34 1.26 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.33 7.72 -51.93 -0.40 -0.07 16 40 H 0.05 0.33 7.70 -51.93 -0.40 -0.07 16 LS Contribution 342.96 15.07 5.17 5.17 Total: -1.00 -32.35 342.96 -8.89 -41.24 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.10 Total: -0.42 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -2.40 Total: 0.80 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.12 Total: -55.14 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.65 Total: -8.12 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.35 -8.89 -41.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.720 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds