Wall clock time and date at job start Tue Mar 31 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42898 * 114.00195 * 2 1 4 4 O 1.42895 * 109.47420 * 80.63193 * 3 2 1 5 5 C 1.42900 * 114.00269 * 283.49019 * 4 3 2 6 6 C 1.50705 * 109.47421 * 200.63513 * 3 2 1 7 7 N 1.31948 * 120.04836 * 18.03513 * 6 3 2 8 8 C 1.32251 * 120.08531 * 179.97438 * 7 6 3 9 9 C 1.38207 * 120.18530 * 359.97438 * 8 7 6 10 10 N 1.32214 * 120.10653 * 359.97438 * 9 8 7 11 11 C 1.32684 * 119.91503 * 0.02562 * 10 9 8 12 12 N 1.38999 * 120.09481 * 179.97438 * 11 10 9 13 13 C 1.46495 * 120.00078 * 354.42889 * 12 11 10 14 14 C 1.52998 * 109.47013 * 179.97438 * 13 12 11 15 15 C 1.53007 * 109.47288 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.46989 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00324 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99343 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00274 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99548 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47209 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46889 * 120.00189 * 20 18 16 23 23 H 1.48498 * 109.46958 * 239.99904 * 20 18 16 24 24 H 1.08994 * 109.47171 * 63.63216 * 1 2 3 25 25 H 1.09005 * 109.46999 * 183.63381 * 1 2 3 26 26 H 1.09003 * 109.47049 * 303.62864 * 1 2 3 27 27 H 1.09003 * 109.46874 * 320.62974 * 3 2 1 28 28 H 1.08997 * 109.47287 * 198.30690 * 5 4 3 29 29 H 1.09003 * 109.46565 * 318.31141 * 5 4 3 30 30 H 1.08999 * 109.47199 * 78.30755 * 5 4 3 31 31 H 1.08002 * 119.90483 * 180.02562 * 8 7 6 32 32 H 1.08002 * 119.94240 * 179.72311 * 9 8 7 33 33 H 0.96999 * 119.99702 * 174.42507 * 12 11 10 34 34 H 1.08999 * 109.46809 * 299.99449 * 13 12 11 35 35 H 1.09001 * 109.47386 * 59.99896 * 13 12 11 36 36 H 1.08999 * 109.47072 * 299.99519 * 14 13 12 37 37 H 1.09004 * 109.47418 * 59.99970 * 14 13 12 38 38 H 1.09000 * 109.46617 * 300.00368 * 15 14 13 39 39 H 1.09004 * 109.46679 * 59.99807 * 15 14 13 40 40 H 0.97003 * 120.00032 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 2.0036 1.8298 1.3292 5 6 0.7249 2.2970 1.7635 6 6 3.4292 1.2235 -0.5007 7 7 3.8306 0.1651 -1.1788 8 6 5.0756 0.0927 -1.6190 9 6 5.9612 1.1245 -1.3716 10 7 5.5667 2.1890 -0.6938 11 6 4.3186 2.2659 -0.2503 12 7 3.9000 3.3830 0.4631 13 6 4.8659 4.4208 0.8319 14 6 4.1513 5.5311 1.6050 15 6 5.1603 6.6147 1.9907 16 6 4.4562 7.7086 2.7516 17 1 3.3954 7.6377 2.9414 18 6 5.1667 8.7992 3.2063 19 7 6.4586 8.8852 2.9755 20 14 4.2942 10.1548 4.1500 21 1 2.8526 9.8214 4.2759 22 1 4.8929 10.2800 5.5033 23 1 4.4438 11.4402 3.4217 24 1 -0.3633 0.4564 -0.9207 25 1 -0.3633 -1.0256 0.0651 26 1 -0.3633 0.5691 0.8557 27 1 1.4322 1.9605 -0.6519 28 1 0.8517 2.9594 2.6198 29 1 0.2420 2.8410 0.9517 30 1 0.1056 1.4471 2.0501 31 1 5.4009 -0.7748 -2.1740 32 1 6.9783 1.0593 -1.7290 33 1 2.9683 3.4754 0.7167 34 1 5.6454 3.9859 1.4574 35 1 5.3141 4.8373 -0.0702 36 1 3.3721 5.9660 0.9791 37 1 3.7029 5.1150 2.5071 38 1 5.9393 6.1795 2.6167 39 1 5.6091 7.0309 1.0887 40 1 6.9585 9.6524 3.2957 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427834.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:40 Heat of formation + Delta-G solvation = -38.042604 kcal Electronic energy + Delta-G solvation = -22021.051311 eV Core-core repulsion = 18643.620018 eV Total energy + Delta-G solvation = -3377.431293 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.13407 -39.23431 -36.78107 -36.05487 -34.08350 -33.60870 -31.97409 -30.12689 -28.41609 -26.66790 -26.17683 -25.79752 -23.77149 -22.71276 -22.10097 -20.44463 -18.21084 -17.64505 -17.30969 -17.11419 -16.73098 -16.25250 -15.27158 -15.05727 -14.67524 -14.58283 -14.51029 -14.24573 -14.02669 -13.71301 -13.53923 -12.75972 -12.30996 -12.23265 -12.00981 -11.81576 -11.68380 -11.34252 -11.14502 -10.90596 -10.71143 -10.56366 -10.42280 -10.06636 -10.01065 -9.71107 -9.53374 -9.14176 -8.94095 -8.38669 -7.66616 -6.03170 -4.06039 0.90836 1.42207 3.02344 3.28676 3.36066 3.38764 3.41905 3.43786 3.86635 4.32541 4.39369 4.43589 4.49604 4.69727 4.82068 4.92263 5.03538 5.15867 5.17158 5.28419 5.32813 5.34954 5.39964 5.57772 5.73421 5.79924 6.17828 6.20949 6.61107 6.64453 6.70987 6.76319 6.95883 7.19362 7.25097 7.62728 7.75606 7.76554 7.95836 8.13318 8.37234 9.00696 9.58154 11.08164 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.003728 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.846555 B = 7509.245570 C = 8802.029900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.366 6.366 3 C 0.310 3.690 4 O -0.385 6.385 5 C 0.015 3.985 6 C 0.001 3.999 7 N -0.368 5.368 8 C -0.041 4.041 9 C 0.119 3.881 10 N -0.501 5.501 11 C 0.392 3.608 12 N -0.693 5.693 13 C 0.124 3.876 14 C -0.121 4.121 15 C 0.025 3.975 16 C -0.521 4.521 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.043 0.957 25 H 0.090 0.910 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.411 0.589 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.780 -17.250 -8.426 21.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.285 6.285 3 C 0.214 3.786 4 O -0.305 6.305 5 C -0.080 4.080 6 C -0.150 4.150 7 N -0.083 5.083 8 C -0.203 4.203 9 C -0.044 4.044 10 N -0.225 5.225 11 C 0.150 3.850 12 N -0.326 5.326 13 C 0.001 3.999 14 C -0.159 4.159 15 C -0.012 4.012 16 C -0.560 4.560 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.182 0.818 32 H 0.186 0.814 33 H 0.252 0.748 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.257 -17.097 -8.189 21.097 hybrid contribution -1.090 1.005 0.498 1.564 sum -10.348 -16.092 -7.691 20.620 Atomic orbital electron populations 1.23177 0.81304 1.03635 1.00398 1.88180 1.19269 1.27463 1.93575 1.21345 0.90009 0.83682 0.83594 1.88079 1.31316 1.78905 1.32182 1.23189 0.85002 0.99137 1.00704 1.20441 0.95222 0.93241 1.06052 1.67828 1.16262 1.20524 1.03698 1.23243 0.89898 1.01512 1.05634 1.23592 1.00852 0.88490 0.91438 1.68203 1.14349 1.25777 1.14168 1.19049 0.89528 0.87653 0.88806 1.45265 1.12769 1.18741 1.55844 1.21666 0.91449 0.87438 0.99395 1.21889 1.00075 0.95639 0.98319 1.19020 0.93678 0.91783 0.96755 1.21239 0.94983 1.04596 1.35158 0.92640 1.25026 0.94850 0.98317 0.96255 1.69972 1.06712 1.30166 1.46403 0.86537 0.79778 0.81960 0.79715 1.19784 1.20983 1.20998 0.93828 0.89174 0.93014 0.91255 0.88598 0.93300 0.92678 0.81754 0.81417 0.74795 0.91879 0.91735 0.92958 0.92708 0.96239 0.96275 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 10.67 101.05 1.08 1.17 16 2 O -0.37 -4.77 10.13 -59.04 -0.60 -5.37 16 3 C 0.31 4.02 2.83 36.01 0.10 4.12 16 4 O -0.39 -5.01 7.90 -59.04 -0.47 -5.47 16 5 C 0.02 0.14 9.88 101.05 1.00 1.14 16 6 C 0.00 0.02 6.54 -82.15 -0.54 -0.52 16 7 N -0.37 -5.40 9.87 -9.12 -0.09 -5.49 16 8 C -0.04 -0.49 11.21 -17.38 -0.19 -0.68 16 9 C 0.12 1.44 11.22 -17.40 -0.20 1.24 16 10 N -0.50 -7.87 9.74 -12.24 -0.12 -7.99 16 11 C 0.39 6.24 7.35 -154.72 -1.14 5.11 16 12 N -0.69 -10.99 5.27 -60.31 -0.32 -11.30 16 13 C 0.12 2.21 5.72 -4.05 -0.02 2.19 16 14 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 15 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 16 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 20 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.37 4.54 -51.93 -0.24 0.14 16 27 H 0.07 0.75 7.56 -51.93 -0.39 0.36 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.35 7.73 -51.93 -0.40 -0.05 16 30 H 0.05 0.43 5.88 -51.93 -0.31 0.12 16 31 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.41 5.92 5.71 -40.82 -0.23 5.69 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -33.57 334.15 -7.20 -40.78 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.76 Total: 0.99 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -0.60 Total: -1.60 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.21 Total: -50.73 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -1.06 Total: -10.84 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.57 -7.20 -40.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427834.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.732 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds