Wall clock time and date at job start Tue Mar 31 2020 05:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47202 * 2 1 4 4 C 1.52996 * 109.47153 * 240.00401 * 2 1 3 5 5 C 1.52997 * 109.47131 * 174.99932 * 4 2 1 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.36935 * 120.00627 * 179.97438 * 8 7 6 10 10 H 1.08012 * 119.99691 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00809 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99595 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00541 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47144 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47272 * 119.99947 * 13 11 9 16 16 H 1.48504 * 109.47033 * 240.00010 * 13 11 9 17 17 N 1.46501 * 109.47432 * 119.99880 * 2 1 3 18 18 C 1.34774 * 119.99941 * 275.00459 * 17 2 1 19 19 O 1.21489 * 120.00083 * 359.97438 * 18 17 2 20 20 C 1.48334 * 119.99633 * 179.97438 * 18 17 2 21 21 C 1.42272 * 126.93510 * 179.97438 * 20 18 17 22 22 C 1.35315 * 103.91870 * 180.02562 * 21 20 18 23 23 O 1.34019 * 106.67231 * 0.02562 * 22 21 20 24 24 N 1.20907 * 111.83944 * 359.70735 * 23 22 21 25 25 H 1.09002 * 109.47186 * 299.99730 * 1 2 3 26 26 H 1.08997 * 109.47659 * 59.99575 * 1 2 3 27 27 H 1.09007 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47452 * 54.99933 * 4 2 1 29 29 H 1.09001 * 109.46997 * 294.99506 * 4 2 1 30 30 H 1.09001 * 109.47502 * 60.00153 * 5 4 2 31 31 H 1.09001 * 109.47289 * 299.99950 * 5 4 2 32 32 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 33 33 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 34 34 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 35 35 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 36 36 H 0.97006 * 119.99755 * 359.97438 * 8 7 6 37 37 H 0.97000 * 120.00324 * 180.02562 * 12 11 9 38 38 H 0.96999 * 119.99400 * 95.00175 * 17 2 1 39 39 H 1.07995 * 128.03991 * 0.02562 * 21 20 18 40 40 H 1.08005 * 126.66439 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3137 6 6 4.0748 -1.3349 -2.5627 7 6 5.5996 -1.2275 -2.6268 8 7 6.0881 -1.9190 -3.8223 9 6 7.4301 -1.9556 -4.0920 10 1 8.1286 -1.4741 -3.4234 11 6 7.8930 -2.6103 -5.2250 12 7 7.0418 -3.1966 -6.0401 13 14 9.7238 -2.6608 -5.5924 14 1 10.4622 -1.9328 -4.5294 15 1 10.1813 -4.0728 -5.6354 16 1 9.9832 -2.0162 -6.9049 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8584 1.1606 2.4116 20 6 2.6410 -0.7176 3.5683 21 6 2.8329 -0.1560 4.8614 22 6 3.2914 -1.1920 5.6014 23 8 3.3516 -2.2519 4.7834 24 7 2.9845 -1.9779 3.6645 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6053 -0.2616 -2.1370 29 1 1.7516 -1.7714 -1.2056 30 1 3.9994 -1.0727 -0.4260 31 1 3.8531 0.4371 -1.3573 32 1 3.7865 -2.3852 -2.5186 33 1 3.6402 -0.8757 -3.4505 34 1 5.8884 -0.1773 -2.6706 35 1 6.0339 -1.6869 -1.7388 36 1 5.4608 -2.3511 -4.4230 37 1 7.3651 -3.6545 -6.8317 38 1 2.2490 -1.6317 1.1525 39 1 2.6542 0.8607 5.1785 40 1 3.5579 -1.1689 6.6478 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169460156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:42 Heat of formation + Delta-G solvation = 18.281927 kcal Electronic energy + Delta-G solvation = -21069.871608 eV Core-core repulsion = 17694.882730 eV Total energy + Delta-G solvation = -3374.988878 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.45780 -40.06921 -37.08185 -35.29058 -34.38676 -33.30166 -32.32834 -31.35429 -30.24871 -27.45931 -25.43916 -24.12433 -23.37653 -22.21990 -21.14960 -20.76881 -20.62993 -18.84318 -18.11129 -17.23490 -16.99402 -16.47826 -15.24226 -15.05135 -14.96420 -14.64843 -14.12601 -13.98621 -13.74442 -13.55036 -13.15420 -12.97081 -12.94176 -12.41824 -12.07604 -11.78545 -11.50338 -11.28832 -11.02001 -10.83341 -10.81428 -10.70920 -10.52771 -10.39947 -10.28811 -10.18044 -9.95346 -9.65980 -9.36260 -8.84312 -6.88142 -5.73593 -3.01908 0.77867 1.31972 2.57965 2.80899 2.87148 3.45267 3.50606 3.53184 3.60746 4.24191 4.49411 4.63218 4.65168 4.82922 4.88950 4.95422 5.03818 5.23224 5.36722 5.42267 5.45075 5.55403 5.59896 5.67842 5.76271 5.86382 5.93120 6.08675 6.15344 6.31505 6.32860 6.40117 6.48033 6.91707 6.95624 7.09959 7.61038 7.73347 7.81244 8.45888 9.56593 10.15886 10.50592 11.49679 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018378 B = 0.002866 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.212536 B = 9766.781852 C =10862.642526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.093 0.907 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.237 4.237 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.705 5.705 18 C 0.600 3.400 19 O -0.524 6.524 20 C -0.030 4.030 21 C -0.186 4.186 22 C -0.059 4.059 23 O 0.124 5.876 24 N -0.329 5.329 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.408 0.592 39 H 0.181 0.819 40 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.314 5.032 23.155 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.111 0.889 4 C -0.165 4.165 5 C -0.154 4.154 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.219 1.219 17 N -0.357 5.357 18 C 0.383 3.617 19 O -0.399 6.399 20 C -0.189 4.189 21 C -0.208 4.208 22 C -0.139 4.139 23 O 0.047 5.953 24 N -0.029 5.029 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.243 0.757 39 H 0.199 0.801 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -14.345 4.946 22.246 26.928 hybrid contribution 0.896 0.097 0.029 0.902 sum -13.449 5.043 22.274 26.504 Atomic orbital electron populations 1.22185 0.95001 1.02320 1.02690 1.21170 0.94012 0.97792 0.83408 0.88942 1.21951 0.96981 1.01072 0.96510 1.21536 0.93891 1.01152 0.98777 1.21722 0.97276 1.00305 0.97013 1.20646 0.91002 0.95313 0.90568 1.42398 1.05357 1.64893 1.25256 1.19306 0.83931 1.28213 1.05421 0.91187 1.24751 0.97756 1.01006 0.97718 1.69675 1.32684 1.40851 1.15193 0.86103 0.85067 0.77224 0.77759 1.20553 1.21850 1.21858 1.46002 1.65932 1.14571 1.09163 1.16864 0.77652 0.85748 0.81403 1.90799 1.50104 1.14651 1.84337 1.23650 1.06670 0.91101 0.97505 1.22792 1.04421 1.02507 0.91094 1.26087 1.02920 0.85591 0.99330 1.84818 1.60709 1.35549 1.14177 1.74208 1.12511 1.16195 1.00021 0.92214 0.91134 0.92321 0.89848 0.91175 0.92193 0.91899 0.92080 0.91979 0.96564 0.96642 0.78345 0.93597 0.75698 0.80138 0.75840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.15 0.35 -1.11 16 2 C 0.14 1.42 2.57 -67.94 -0.17 1.25 16 3 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 4 C -0.13 -1.30 4.75 -26.73 -0.13 -1.42 16 5 C -0.12 -1.49 5.10 -26.73 -0.14 -1.63 16 6 C -0.13 -2.05 5.33 -26.73 -0.14 -2.20 16 7 C 0.15 3.23 6.26 -4.05 -0.03 3.20 16 8 N -0.74 -19.57 5.60 -59.91 -0.34 -19.91 16 9 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 10 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 12 N -0.93 -29.03 13.06 55.49 0.72 -28.31 16 13 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 16 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 17 N -0.70 -7.50 4.53 -54.60 -0.25 -7.75 16 18 C 0.60 7.31 7.81 -12.11 -0.09 7.22 16 19 O -0.52 -7.68 16.61 5.38 0.09 -7.59 16 20 C -0.03 -0.32 7.19 -82.53 -0.59 -0.91 16 21 C -0.19 -1.44 10.99 -39.07 -0.43 -1.87 16 22 C -0.06 -0.31 12.28 29.69 0.36 0.06 16 23 O 0.12 1.02 11.18 17.24 0.19 1.21 16 24 N -0.33 -3.47 11.84 33.29 0.39 -3.07 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.79 7.75 -51.93 -0.40 0.38 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.38 10.60 7.67 -40.82 -0.31 10.29 16 37 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.41 4.00 8.36 -40.82 -0.34 3.66 16 39 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.23 0.06 8.06 -52.48 -0.42 -0.36 16 LS Contribution 346.00 15.07 5.21 5.21 Total: -1.00 -34.86 346.00 -6.31 -41.17 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.07 Total: 6.18 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.25 Total: -5.09 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.54 Total: -59.04 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: 0.28 Total: -6.37 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.86 -6.31 -41.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169460156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.456 kcal (2) G-P(sol) polarization free energy of solvation -34.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds