Wall clock time and date at job start Tue Mar 31 2020 05:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47202 * 2 1 4 4 C 1.52996 * 109.47153 * 240.00401 * 2 1 3 5 5 C 1.52997 * 109.47131 * 174.99932 * 4 2 1 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.36935 * 120.00627 * 179.97438 * 8 7 6 10 10 H 1.08012 * 119.99691 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00809 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99595 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00541 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47144 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47272 * 119.99947 * 13 11 9 16 16 H 1.48504 * 109.47033 * 240.00010 * 13 11 9 17 17 N 1.46501 * 109.47432 * 119.99880 * 2 1 3 18 18 C 1.34774 * 119.99941 * 275.00459 * 17 2 1 19 19 O 1.21489 * 120.00083 * 359.97438 * 18 17 2 20 20 C 1.48334 * 119.99633 * 179.97438 * 18 17 2 21 21 C 1.42272 * 126.93510 * 179.97438 * 20 18 17 22 22 C 1.35315 * 103.91870 * 180.02562 * 21 20 18 23 23 O 1.34019 * 106.67231 * 0.02562 * 22 21 20 24 24 N 1.20907 * 111.83944 * 359.70735 * 23 22 21 25 25 H 1.09002 * 109.47186 * 299.99730 * 1 2 3 26 26 H 1.08997 * 109.47659 * 59.99575 * 1 2 3 27 27 H 1.09007 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47452 * 54.99933 * 4 2 1 29 29 H 1.09001 * 109.46997 * 294.99506 * 4 2 1 30 30 H 1.09001 * 109.47502 * 60.00153 * 5 4 2 31 31 H 1.09001 * 109.47289 * 299.99950 * 5 4 2 32 32 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 33 33 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 34 34 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 35 35 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 36 36 H 0.97006 * 119.99755 * 359.97438 * 8 7 6 37 37 H 0.97000 * 120.00324 * 180.02562 * 12 11 9 38 38 H 0.96999 * 119.99400 * 95.00175 * 17 2 1 39 39 H 1.07995 * 128.03991 * 0.02562 * 21 20 18 40 40 H 1.08005 * 126.66439 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3137 6 6 4.0748 -1.3349 -2.5627 7 6 5.5996 -1.2275 -2.6268 8 7 6.0881 -1.9190 -3.8223 9 6 7.4301 -1.9556 -4.0920 10 1 8.1286 -1.4741 -3.4234 11 6 7.8930 -2.6103 -5.2250 12 7 7.0418 -3.1966 -6.0401 13 14 9.7238 -2.6608 -5.5924 14 1 10.4622 -1.9328 -4.5294 15 1 10.1813 -4.0728 -5.6354 16 1 9.9832 -2.0162 -6.9049 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8584 1.1606 2.4116 20 6 2.6410 -0.7176 3.5683 21 6 2.8329 -0.1560 4.8614 22 6 3.2914 -1.1920 5.6014 23 8 3.3516 -2.2519 4.7834 24 7 2.9845 -1.9779 3.6645 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6053 -0.2616 -2.1370 29 1 1.7516 -1.7714 -1.2056 30 1 3.9994 -1.0727 -0.4260 31 1 3.8531 0.4371 -1.3573 32 1 3.7865 -2.3852 -2.5186 33 1 3.6402 -0.8757 -3.4505 34 1 5.8884 -0.1773 -2.6706 35 1 6.0339 -1.6869 -1.7388 36 1 5.4608 -2.3511 -4.4230 37 1 7.3651 -3.6545 -6.8317 38 1 2.2490 -1.6317 1.1525 39 1 2.6542 0.8607 5.1785 40 1 3.5579 -1.1689 6.6478 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169460156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:42 Heat of formation + Delta-G solvation = -6.145019 kcal Electronic energy + Delta-G solvation = -21070.930840 eV Core-core repulsion = 17694.882730 eV Total energy + Delta-G solvation = -3376.048110 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.11794 -40.97806 -38.15539 -36.90744 -35.12297 -34.79854 -33.22842 -32.62880 -31.57622 -28.87081 -26.34084 -25.78349 -24.00117 -23.70606 -22.15883 -21.99776 -21.55963 -19.50489 -19.14557 -18.79154 -18.01800 -17.35393 -16.71377 -16.35626 -16.08735 -15.70366 -15.38651 -15.29470 -14.92306 -14.63620 -14.28223 -14.19126 -14.13177 -13.32253 -13.10020 -12.92966 -12.89477 -12.74153 -12.50989 -12.36058 -12.13235 -11.92537 -11.88645 -11.60460 -11.54296 -11.46145 -11.39671 -10.97695 -10.73125 -10.26575 -9.04654 -7.99025 -5.28780 0.06850 0.78139 1.45194 1.46611 1.56993 1.81948 2.01801 2.32302 2.53376 2.89114 3.34309 3.51682 3.68868 3.95004 3.99100 4.03276 4.09749 4.25878 4.29372 4.35095 4.55075 4.59245 4.65186 4.69966 4.82017 4.87217 4.93175 4.95137 4.98201 5.03188 5.21138 5.26088 5.33942 5.42441 5.46801 5.48342 6.23998 6.24397 6.87709 7.06403 7.29523 8.05243 8.29389 9.24903 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018378 B = 0.002866 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.212536 B = 9766.781852 C =10862.642526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 H 0.078 0.922 4 C -0.117 4.117 5 C -0.106 4.106 6 C -0.112 4.112 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.251 4.251 10 H 0.073 0.927 11 C -0.076 4.076 12 N -0.970 5.970 13 Si 0.977 3.023 14 H -0.267 1.267 15 H -0.290 1.290 16 H -0.290 1.290 17 N -0.700 5.700 18 C 0.596 3.404 19 O -0.558 6.558 20 C -0.058 4.058 21 C -0.206 4.206 22 C -0.026 4.026 23 O 0.124 5.876 24 N -0.353 5.353 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.015 0.985 35 H 0.014 0.986 36 H 0.374 0.626 37 H 0.253 0.747 38 H 0.412 0.588 39 H 0.192 0.808 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.151 4.943 24.681 28.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.038 3.962 3 H 0.096 0.904 4 C -0.155 4.155 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.022 3.978 8 N -0.392 5.392 9 C -0.383 4.383 10 H 0.091 0.909 11 C -0.269 4.269 12 N -0.620 5.620 13 Si 0.805 3.195 14 H -0.191 1.191 15 H -0.217 1.217 16 H -0.217 1.217 17 N -0.351 5.351 18 C 0.380 3.620 19 O -0.435 6.435 20 C -0.216 4.216 21 C -0.229 4.229 22 C -0.106 4.106 23 O 0.047 5.953 24 N -0.052 5.052 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.033 0.967 35 H 0.032 0.968 36 H 0.206 0.794 37 H 0.062 0.938 38 H 0.248 0.752 39 H 0.209 0.791 40 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -14.191 4.859 23.786 28.121 hybrid contribution 0.851 0.129 -0.342 0.926 sum -13.340 4.988 23.444 27.431 Atomic orbital electron populations 1.22127 0.93732 1.02939 1.02752 1.21156 0.94942 0.96951 0.83178 0.90402 1.21865 0.94700 1.01935 0.96980 1.21432 0.95880 1.00358 0.96763 1.21593 0.93790 1.00868 0.98735 1.20842 0.94228 0.94331 0.88399 1.42631 1.04602 1.65317 1.26628 1.19694 0.85280 1.27808 1.05508 0.90926 1.25631 1.02425 1.01077 0.97726 1.69825 1.34711 1.41850 1.15646 0.85024 0.79645 0.77149 0.77639 1.19138 1.21663 1.21700 1.46037 1.65345 1.14700 1.09044 1.17141 0.77185 0.85501 0.82141 1.90766 1.51782 1.15969 1.84986 1.23700 1.08051 0.91743 0.98072 1.23079 1.05646 1.03844 0.90338 1.26989 0.99715 0.83462 1.00440 1.84777 1.60046 1.36522 1.13957 1.74209 1.13541 1.16213 1.01282 0.93547 0.89670 0.91387 0.88586 0.90084 0.92474 0.92147 0.92053 0.91925 0.96726 0.96845 0.79370 0.93823 0.75204 0.79125 0.70688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.48 71.98 0.68 -1.95 16 2 C 0.14 2.78 2.57 44.99 0.12 2.89 16 3 H 0.08 1.79 7.58 -2.38 -0.02 1.77 16 4 C -0.12 -2.20 4.75 30.59 0.15 -2.06 16 5 C -0.11 -2.65 5.10 30.60 0.16 -2.49 16 6 C -0.11 -3.59 5.33 30.60 0.16 -3.43 16 7 C 0.15 6.28 6.26 86.38 0.54 6.82 16 8 N -0.75 -40.19 5.60 -343.46 -1.92 -42.11 16 9 C -0.25 -14.69 9.99 84.03 0.84 -13.86 16 10 H 0.07 4.11 7.83 -2.90 -0.02 4.09 16 11 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 12 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 13 Si 0.98 47.14 29.55 68.60 2.03 49.16 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 16 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 17 N -0.70 -14.82 4.53 -444.96 -2.01 -16.83 16 18 C 0.60 14.79 7.81 86.93 0.68 15.47 16 19 O -0.56 -16.80 16.61 -3.68 -0.06 -16.86 16 20 C -0.06 -1.23 7.19 42.96 0.31 -0.92 16 21 C -0.21 -2.94 10.99 22.60 0.25 -2.69 16 22 C -0.03 -0.20 12.28 67.14 0.82 0.63 16 23 O 0.12 1.84 11.18 71.85 0.80 2.64 16 24 N -0.35 -7.23 11.84 -49.51 -0.59 -7.82 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.46 7.75 -2.39 -0.02 1.44 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.37 21.02 7.67 -92.70 -0.71 20.31 16 37 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.41 7.97 8.36 -92.71 -0.78 7.19 16 39 H 0.19 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.28 -1.19 8.06 -2.91 -0.02 -1.21 16 Total: -1.00 -76.03 346.00 3.26 -72.76 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -0.44 Total: 25.11 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 5.17 Total: -5.65 kcal Atomic # 7 Polarization: -122.92 SS G_CDS: -4.24 Total: -127.16 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.74 Total: -14.22 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -76.03 3.26 -72.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169460156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.619 kcal (2) G-P(sol) polarization free energy of solvation -76.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds