Wall clock time and date at job start Tue Mar 31 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47029 * 2 1 4 4 C 1.53004 * 109.47142 * 119.99861 * 2 1 3 5 5 C 1.52995 * 109.47087 * 185.00257 * 4 2 1 6 6 C 1.53002 * 109.47024 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47059 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.46769 * 180.02562 * 7 6 5 9 9 C 1.36934 * 119.99501 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00236 * 359.97438 * 9 8 7 11 11 C 1.38817 * 119.99763 * 179.97438 * 9 8 7 12 12 N 1.31614 * 119.99973 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99897 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47494 * 90.00140 * 13 11 9 15 15 H 1.48505 * 109.46973 * 210.00228 * 13 11 9 16 16 H 1.48499 * 109.47342 * 330.00069 * 13 11 9 17 17 N 1.46494 * 109.47639 * 239.99820 * 2 1 3 18 18 C 1.34773 * 120.00117 * 84.99553 * 17 2 1 19 19 O 1.21618 * 119.99820 * 0.02562 * 18 17 2 20 20 C 1.47424 * 120.00363 * 180.02562 * 18 17 2 21 21 C 1.36093 * 126.44905 * 180.02562 * 20 18 17 22 22 O 1.34258 * 106.94734 * 179.77808 * 21 20 18 23 23 C 1.34052 * 108.22713 * 0.39036 * 22 21 20 24 24 N 1.29935 * 109.24422 * 359.59928 * 23 22 21 25 25 H 1.08997 * 109.47171 * 60.00604 * 1 2 3 26 26 H 1.09004 * 109.47029 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47182 * 299.99981 * 1 2 3 28 28 H 1.09001 * 109.46641 * 305.00426 * 4 2 1 29 29 H 1.08998 * 109.47057 * 65.00275 * 4 2 1 30 30 H 1.08994 * 109.47533 * 299.99977 * 5 4 2 31 31 H 1.08998 * 109.47158 * 60.00079 * 5 4 2 32 32 H 1.08993 * 109.47498 * 300.00032 * 6 5 4 33 33 H 1.08998 * 109.46778 * 60.00227 * 6 5 4 34 34 H 1.09001 * 109.46895 * 299.99948 * 7 6 5 35 35 H 1.08998 * 109.47222 * 60.00400 * 7 6 5 36 36 H 0.96997 * 119.99779 * 359.97438 * 8 7 6 37 37 H 0.96996 * 120.00084 * 180.02562 * 12 11 9 38 38 H 0.97007 * 120.00100 * 265.00779 * 17 2 1 39 39 H 1.07994 * 126.52592 * 0.02562 * 21 20 18 40 40 H 1.08002 * 125.38147 * 179.87136 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0747 -1.3339 2.5634 7 6 5.5995 -1.2253 2.6282 8 7 6.0878 -1.9160 3.8244 9 6 7.4298 -1.9513 4.0947 10 1 8.1282 -1.4705 3.4258 11 6 7.8924 -2.6052 5.2284 12 7 9.1823 -2.6397 5.4879 13 14 6.6843 -3.4363 6.3857 14 1 6.4797 -4.8442 5.9602 15 1 7.2258 -3.4106 7.7683 16 1 5.3870 -2.7145 6.3487 17 7 2.0184 -0.6906 -1.1961 18 6 2.1471 -0.0183 -2.3570 19 8 1.8582 1.1618 -2.4116 20 6 2.6381 -0.7134 -3.5609 21 6 2.8181 -0.1659 -4.7938 22 8 3.2808 -1.1416 -5.5915 23 6 3.3749 -2.2659 -4.8675 24 7 2.9963 -2.0232 -3.6485 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6053 -0.2617 2.1370 29 1 1.7517 -1.7715 1.2056 30 1 3.9995 -1.0727 0.4261 31 1 3.8531 0.4370 1.3574 32 1 3.6401 -0.8741 3.4508 33 1 3.7864 -2.3842 2.5201 34 1 6.0345 -1.6850 1.7407 35 1 5.8875 -0.1750 2.6717 36 1 5.4604 -2.3474 4.4253 37 1 9.5056 -3.0969 6.2799 38 1 2.2491 -1.6318 -1.1525 39 1 2.6288 0.8593 -5.0756 40 1 3.7162 -3.2214 -5.2377 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169748830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:52 Heat of formation + Delta-G solvation = -18.319936 kcal Electronic energy + Delta-G solvation = -21097.002797 eV Core-core repulsion = 17720.426743 eV Total energy + Delta-G solvation = -3376.576054 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.80836 -39.94544 -37.07314 -35.42133 -35.25077 -33.26150 -31.66139 -30.85303 -30.33191 -27.75281 -25.00701 -24.01336 -23.14562 -21.88490 -21.08205 -20.87838 -20.66766 -18.82261 -17.47381 -17.12377 -16.95997 -16.47661 -15.50192 -15.19282 -14.99033 -14.59692 -14.37948 -14.07416 -13.96429 -13.52282 -13.34191 -13.01738 -12.71194 -12.43245 -11.90707 -11.79840 -11.63661 -11.44465 -11.26884 -11.14832 -10.85643 -10.82373 -10.45992 -10.36178 -10.29948 -10.07467 -9.62009 -9.55774 -9.25414 -8.85731 -7.18929 -5.73705 -3.08685 0.74168 1.66713 2.27864 2.86463 3.02769 3.39557 3.42360 3.46941 3.64976 4.40873 4.43989 4.56326 4.62095 4.84604 4.94200 5.10417 5.19795 5.21683 5.32595 5.36351 5.51175 5.56850 5.59244 5.64735 5.68957 5.83131 5.88832 6.04304 6.10330 6.16275 6.21901 6.32453 6.40209 6.81667 6.85444 6.96629 7.32189 7.91024 8.03662 8.45785 9.25398 9.97896 10.18465 11.45009 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019427 B = 0.002959 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.921809 B = 9460.801652 C =10402.052224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.129 4.129 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.243 4.243 10 H 0.089 0.911 11 C 0.002 3.998 12 N -0.936 5.936 13 Si 0.886 3.114 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 N -0.703 5.703 18 C 0.603 3.397 19 O -0.539 6.539 20 C -0.075 4.075 21 C 0.016 3.984 22 O -0.200 6.200 23 C 0.181 3.819 24 N -0.466 5.466 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.410 0.590 39 H 0.230 0.770 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.313 2.751 -21.461 29.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.109 0.891 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.167 4.167 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.373 4.373 10 H 0.107 0.893 11 C -0.194 4.194 12 N -0.584 5.584 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.203 1.203 17 N -0.354 5.354 18 C 0.388 3.612 19 O -0.417 6.417 20 C -0.195 4.195 21 C -0.059 4.059 22 O -0.085 6.085 23 C -0.048 4.048 24 N -0.195 5.195 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.246 0.754 39 H 0.246 0.754 40 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -19.281 3.192 -21.011 28.695 hybrid contribution -0.505 -0.765 0.404 1.002 sum -19.786 2.427 -20.607 28.671 Atomic orbital electron populations 1.22180 0.95167 1.02215 1.02582 1.21121 0.93902 0.97781 0.83622 0.89064 1.21942 0.96881 1.01036 0.96631 1.21519 0.93983 1.01222 0.98615 1.21773 0.97270 1.00322 0.97340 1.20632 0.90807 0.95671 0.89983 1.42741 1.05241 1.66306 1.26084 1.19096 0.82299 1.29187 1.06737 0.89292 1.24688 0.95640 1.00793 0.98263 1.69705 1.11737 1.48364 1.28635 0.86509 0.80953 0.79804 0.81057 1.21089 1.21737 1.20333 1.45912 1.65815 1.14676 1.08990 1.16740 0.77230 0.85487 0.81730 1.90828 1.51252 1.14817 1.84792 1.21842 1.10278 0.91131 0.96234 1.25330 0.97327 0.94477 0.88721 1.84459 1.63429 1.19034 1.41556 1.28180 0.99960 0.91410 0.85224 1.70779 1.14626 1.14234 1.19863 0.92218 0.92402 0.91329 0.90070 0.91247 0.91854 0.91784 0.92102 0.92135 0.95730 0.95750 0.80736 0.93096 0.75435 0.75353 0.72845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.48 37.16 0.35 -1.06 16 2 C 0.14 1.37 2.57 -67.93 -0.17 1.19 16 3 H 0.09 1.03 7.58 -51.93 -0.39 0.63 16 4 C -0.13 -1.22 4.75 -26.73 -0.13 -1.35 16 5 C -0.12 -1.40 5.10 -26.73 -0.14 -1.54 16 6 C -0.13 -1.96 5.33 -26.73 -0.14 -2.10 16 7 C 0.16 3.14 6.26 -4.04 -0.03 3.12 16 8 N -0.76 -18.85 5.41 -59.90 -0.32 -19.17 16 9 C -0.24 -7.16 10.47 -15.06 -0.16 -7.32 16 10 H 0.09 2.80 8.06 -52.49 -0.42 2.37 16 11 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 12 N -0.94 -30.09 13.97 55.49 0.78 -29.31 16 13 Si 0.89 22.57 27.73 -169.99 -4.71 17.85 16 14 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 16 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 17 N -0.70 -7.25 4.53 -54.88 -0.25 -7.49 16 18 C 0.60 7.09 7.78 -12.52 -0.10 6.99 16 19 O -0.54 -7.60 16.55 5.26 0.09 -7.51 16 20 C -0.08 -0.77 6.99 -83.02 -0.58 -1.35 16 21 C 0.02 0.12 11.95 29.96 0.36 0.48 16 22 O -0.20 -1.40 10.73 6.50 0.07 -1.33 16 23 C 0.18 1.13 13.19 51.96 0.69 1.82 16 24 N -0.47 -4.41 11.06 -11.48 -0.13 -4.54 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.79 7.75 -51.93 -0.40 0.39 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.36 8.64 5.53 -40.82 -0.23 8.42 16 37 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 38 H 0.41 3.93 8.33 -40.82 -0.34 3.59 16 39 H 0.23 1.18 8.06 -52.49 -0.42 0.75 16 40 H 0.26 0.33 8.06 -52.49 -0.42 -0.09 16 LS Contribution 343.19 15.07 5.17 5.17 Total: -1.00 -36.17 343.19 -5.48 -41.64 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.03 Total: 5.86 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -0.14 Total: -1.17 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: 0.08 Total: -60.52 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.16 Total: -8.84 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.17 -5.48 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169748830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.324 kcal (2) G-P(sol) polarization free energy of solvation -36.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds