Wall clock time and date at job start Tue Mar 31 2020 05:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 O 1.34257 * 126.52238 * 60.02690 * 4 2 1 6 6 C 1.34049 * 108.22518 * 180.02562 * 5 4 2 7 7 N 1.29939 * 109.24565 * 359.97438 * 6 5 4 8 8 C 1.36077 * 108.47339 * 359.73874 * 7 6 5 9 9 C 1.47413 * 126.44657 * 180.30089 * 8 7 6 10 10 O 1.21613 * 119.99646 * 180.14337 * 9 8 7 11 11 N 1.34779 * 120.00488 * 0.14149 * 9 8 7 12 12 C 1.46492 * 120.00059 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47107 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47326 * 180.02562 * 13 12 11 15 15 N 1.46501 * 109.47129 * 179.97438 * 14 13 12 16 16 C 1.36943 * 119.99953 * 179.97438 * 15 14 13 17 17 H 1.07992 * 119.99845 * 0.02562 * 16 15 14 18 18 C 1.38806 * 119.99839 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00170 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 120.00263 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46911 * 89.99742 * 20 18 16 22 22 H 1.48497 * 109.47101 * 210.00116 * 20 18 16 23 23 H 1.48500 * 109.46874 * 329.99876 * 20 18 16 24 24 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 25 25 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 27 27 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 28 28 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 29 29 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 30 30 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 31 31 H 1.08001 * 125.38296 * 180.02562 * 6 5 4 32 32 H 0.97004 * 119.99669 * 0.02562 * 11 9 8 33 33 H 1.09003 * 109.47682 * 299.99812 * 12 11 9 34 34 H 1.09003 * 109.47386 * 60.00437 * 12 11 9 35 35 H 1.09007 * 109.46804 * 299.99676 * 13 12 11 36 36 H 1.09003 * 109.47544 * 59.99447 * 13 12 11 37 37 H 1.09003 * 109.47162 * 299.99088 * 14 13 12 38 38 H 1.09003 * 109.47687 * 59.99579 * 14 13 12 39 39 H 0.96995 * 119.99974 * 359.97438 * 15 14 13 40 40 H 0.97000 * 120.00041 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.7904 -0.3674 -2.5058 6 6 2.4124 -1.2483 -3.3021 7 7 3.0317 -2.1249 -2.5696 8 6 2.8225 -1.8180 -1.2605 9 6 3.3497 -2.5496 -0.0944 10 8 3.0855 -2.1715 1.0309 11 7 4.1245 -3.6375 -0.2752 12 6 4.6488 -4.3642 0.8837 13 6 5.4913 -5.5482 0.4048 14 6 6.0384 -6.3075 1.6151 15 7 6.8445 -7.4416 1.1565 16 6 7.4408 -8.2710 2.0685 17 1 7.3164 -8.0894 3.1257 18 6 8.2042 -9.3458 1.6340 19 7 8.7769 -10.1434 2.5105 20 14 8.4187 -9.6604 -0.1949 21 1 9.6159 -8.9314 -0.6854 22 1 8.5950 -11.1161 -0.4294 23 1 7.2158 -9.1837 -0.9236 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9562 0.8901 30 1 3.1301 1.4425 0.0005 31 1 2.4014 -1.2317 -4.3819 32 1 4.3355 -3.9389 -1.1728 33 1 5.2686 -3.6960 1.4816 34 1 3.8193 -4.7294 1.4893 35 1 4.8717 -6.2166 -0.1933 36 1 6.3207 -5.1827 -0.2007 37 1 6.6578 -5.6395 2.2135 38 1 5.2087 -6.6731 2.2202 39 1 6.9559 -7.6049 0.2069 40 1 9.3101 -10.8947 2.2068 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170331701.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:47 Heat of formation + Delta-G solvation = -44.218963 kcal Electronic energy + Delta-G solvation = -21190.407664 eV Core-core repulsion = 17812.708543 eV Total energy + Delta-G solvation = -3377.699120 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.50152 -40.67360 -37.71414 -36.75953 -35.92456 -35.82178 -33.87217 -31.86383 -30.65249 -28.14207 -27.44500 -25.22831 -24.36333 -23.70567 -22.72367 -21.80663 -21.31801 -19.76539 -19.03330 -17.84853 -17.38903 -17.14670 -16.82339 -16.51479 -16.06567 -15.84278 -15.60198 -15.54771 -14.86283 -14.76976 -14.60159 -14.14456 -13.96532 -13.79400 -13.12567 -12.89906 -12.74304 -12.59941 -12.57421 -12.46130 -12.26534 -12.15839 -12.10859 -12.02000 -11.81249 -11.78441 -11.09529 -10.98793 -10.30490 -9.93139 -9.32645 -8.03931 -5.38883 0.00877 1.02417 1.38179 1.42747 1.50033 1.52254 2.04694 2.17253 2.48363 3.07088 3.27208 3.42971 3.52740 3.69822 3.94220 4.04208 4.05214 4.17609 4.21758 4.26039 4.51139 4.60529 4.67257 4.68919 4.70623 4.83962 4.84887 4.87426 5.05471 5.15873 5.19593 5.24291 5.26221 5.27222 5.38771 5.73998 6.19753 6.24181 6.55398 7.02113 7.06285 7.81095 8.01407 9.17506 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033971 B = 0.002702 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.025344 B =10359.376752 C =10981.732858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.035 4.035 3 C -0.141 4.141 4 C 0.056 3.944 5 O -0.194 6.194 6 C 0.196 3.804 7 N -0.494 5.494 8 C -0.105 4.105 9 C 0.596 3.404 10 O -0.562 6.562 11 N -0.703 5.703 12 C 0.131 3.869 13 C -0.124 4.124 14 C 0.156 3.844 15 N -0.759 5.759 16 C -0.241 4.241 17 H 0.055 0.945 18 C -0.067 4.067 19 N -0.985 5.985 20 Si 0.961 3.039 21 H -0.276 1.276 22 H -0.295 1.295 23 H -0.248 1.248 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.113 0.887 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.305 0.695 32 H 0.416 0.584 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.028 0.972 38 H 0.027 0.973 39 H 0.368 0.632 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.611 26.000 -15.066 35.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.053 4.053 3 C -0.199 4.199 4 C -0.001 4.001 5 O -0.081 6.081 6 C -0.033 4.033 7 N -0.222 5.222 8 C -0.223 4.223 9 C 0.383 3.617 10 O -0.442 6.442 11 N -0.354 5.354 12 C 0.007 3.993 13 C -0.162 4.162 14 C 0.029 3.971 15 N -0.406 5.406 16 C -0.372 4.372 17 H 0.073 0.927 18 C -0.258 4.258 19 N -0.635 5.635 20 Si 0.788 3.212 21 H -0.202 1.202 22 H -0.222 1.222 23 H -0.172 1.172 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.105 0.895 27 H 0.131 0.869 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.319 0.681 32 H 0.252 0.748 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.201 0.799 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.385 25.675 -14.273 34.655 hybrid contribution 0.386 -0.544 -0.866 1.093 sum -17.999 25.131 -15.139 34.420 Atomic orbital electron populations 1.21834 0.91659 1.02363 1.04000 1.20378 0.97945 0.97048 0.89949 1.21833 1.00973 0.93049 1.03996 1.24020 0.96126 0.94886 0.85097 1.84394 1.59127 1.48934 1.15599 1.29188 0.90520 0.83307 1.00278 1.70721 1.23075 1.27523 1.00905 1.21350 1.08105 1.00615 0.92257 1.16988 0.78088 0.80102 0.86550 1.90726 1.60730 1.68290 1.24502 1.45752 1.50274 1.28031 1.11306 1.21211 0.97592 0.92827 0.87642 1.21769 0.99907 0.96155 0.98346 1.20646 0.93202 0.87872 0.95384 1.42679 1.61133 1.32062 1.04691 1.19052 1.23019 1.05256 0.89856 0.92703 1.25606 0.99931 0.97572 1.02721 1.69899 1.39094 1.19443 1.35041 0.85319 0.78997 0.76802 0.80118 1.20225 1.22179 1.17247 0.91206 0.93191 0.89538 0.86910 0.91206 0.89538 0.93205 0.68058 0.74760 0.91196 0.91231 0.90302 0.90165 0.95353 0.95463 0.79851 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.18 71.98 0.66 -1.12 16 2 C -0.03 -0.58 3.24 -11.54 -0.04 -0.62 16 3 C -0.14 -1.79 9.18 71.98 0.66 -1.13 16 4 C 0.06 1.08 5.95 25.19 0.15 1.23 16 5 O -0.19 -2.85 10.73 0.39 0.00 -2.84 16 6 C 0.20 2.23 13.19 130.52 1.72 3.95 16 7 N -0.49 -9.57 11.06 -305.15 -3.37 -12.94 16 8 C -0.10 -2.43 6.99 40.40 0.28 -2.14 16 9 C 0.60 16.15 7.81 86.66 0.68 16.83 16 10 O -0.56 -17.66 14.47 -4.07 -0.06 -17.71 16 11 N -0.70 -17.21 5.55 -466.38 -2.59 -19.80 16 12 C 0.13 3.39 5.67 86.38 0.49 3.88 16 13 C -0.12 -3.41 5.44 30.59 0.17 -3.25 16 14 C 0.16 5.86 6.26 86.38 0.54 6.40 16 15 N -0.76 -35.86 5.41 -343.46 -1.86 -37.72 16 16 C -0.24 -14.07 10.47 84.03 0.88 -13.19 16 17 H 0.05 3.52 8.06 -2.91 -0.02 3.49 16 18 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 19 N -0.98 -64.02 13.97 21.65 0.30 -63.72 16 20 Si 0.96 45.50 27.74 68.60 1.90 47.41 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 23 H -0.25 -10.44 6.52 99.48 0.65 -9.79 16 24 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.11 2.45 5.52 -2.39 -0.01 2.44 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.30 -0.28 8.06 -2.91 -0.02 -0.30 16 32 H 0.42 8.99 8.20 -92.71 -0.76 8.23 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.37 16.22 5.53 -92.71 -0.51 15.71 16 40 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -76.80 339.91 0.71 -76.09 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -0.27 Total: 23.93 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 6.66 Total: 7.31 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -7.52 Total: -134.18 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.56 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.90 Total: 47.41 kcal Total: -76.80 0.71 -76.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170331701.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.866 kcal (2) G-P(sol) polarization free energy of solvation -76.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds