Wall clock time and date at job start Tue Mar 31 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47141 * 2 1 4 4 C 1.53001 * 109.47093 * 120.00191 * 2 1 3 5 5 C 1.52994 * 109.47427 * 184.99951 * 4 2 1 6 6 C 1.52998 * 109.47362 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47028 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.46830 * 180.02562 * 7 6 5 9 9 C 1.36938 * 119.99597 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00580 * 0.02562 * 9 8 7 11 11 C 1.38812 * 119.99736 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00148 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99966 * 180.02562 * 11 9 8 14 14 H 1.48509 * 109.47103 * 60.00302 * 13 11 9 15 15 H 1.48493 * 109.47460 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47257 * 300.00667 * 13 11 9 17 17 N 1.46500 * 109.46817 * 239.99748 * 2 1 3 18 18 C 1.34774 * 119.99813 * 85.00294 * 17 2 1 19 19 O 1.21684 * 120.00427 * 359.97438 * 18 17 2 20 20 C 1.46722 * 119.99727 * 179.97438 * 18 17 2 21 21 C 1.36347 * 126.63972 * 180.02562 * 20 18 17 22 22 N 1.33695 * 107.44949 * 179.97438 * 21 20 18 23 23 C 1.30620 * 108.99740 * 359.97438 * 22 21 20 24 24 O 1.33665 * 109.15088 * 0.23595 * 23 22 21 25 25 H 1.09000 * 109.47141 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47145 * 300.00072 * 1 2 3 27 27 H 1.09004 * 109.47107 * 60.00019 * 1 2 3 28 28 H 1.09005 * 109.46694 * 304.99811 * 4 2 1 29 29 H 1.09002 * 109.47601 * 64.99427 * 4 2 1 30 30 H 1.08997 * 109.47079 * 299.99978 * 5 4 2 31 31 H 1.09010 * 109.46877 * 59.99389 * 5 4 2 32 32 H 1.08997 * 109.47316 * 300.00212 * 6 5 4 33 33 H 1.08998 * 109.46905 * 59.99942 * 6 5 4 34 34 H 1.08997 * 109.47206 * 300.00231 * 7 6 5 35 35 H 1.08998 * 109.47364 * 60.00175 * 7 6 5 36 36 H 0.96992 * 120.00357 * 359.97438 * 8 7 6 37 37 H 0.96999 * 119.99612 * 179.97438 * 12 11 9 38 38 H 0.97005 * 120.00213 * 264.99438 * 17 2 1 39 39 H 1.07996 * 126.27611 * 359.97438 * 21 20 18 40 40 H 1.08002 * 125.42040 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 6 4.0747 -1.3341 2.5633 7 6 5.5995 -1.2256 2.6281 8 7 6.0878 -1.9163 3.8242 9 6 7.4299 -1.9527 4.0939 10 1 8.1284 -1.4719 3.4250 11 6 7.8925 -2.6066 5.2275 12 7 7.0413 -3.1921 6.0430 13 14 9.7232 -2.6556 5.5958 14 1 10.2350 -1.2698 5.7472 15 1 9.9551 -3.4095 6.8540 16 1 10.4351 -3.3268 4.4787 17 7 2.0183 -0.6907 -1.1962 18 6 2.1470 -0.0183 -2.3571 19 8 1.8573 1.1622 -2.4119 20 6 2.6366 -0.7099 -3.5549 21 6 2.8184 -0.1655 -4.7917 22 7 3.2763 -1.1333 -5.5924 23 6 3.3826 -2.2389 -4.9051 24 8 2.9916 -2.0127 -3.6472 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -0.2617 2.1370 29 1 1.7516 -1.7716 1.2057 30 1 3.9994 -1.0729 0.4260 31 1 3.8532 0.4370 1.3573 32 1 3.6401 -0.8743 3.4508 33 1 3.7863 -2.3844 2.5200 34 1 6.0345 -1.6852 1.7406 35 1 5.8876 -0.1753 2.6715 36 1 5.4605 -2.3478 4.4251 37 1 7.3647 -3.6494 6.8349 38 1 2.2491 -1.6319 -1.1526 39 1 2.6277 0.8596 -5.0729 40 1 3.7273 -3.1862 -5.2928 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171953224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:46 Heat of formation + Delta-G solvation = -19.683124 kcal Electronic energy + Delta-G solvation = -21089.880385 eV Core-core repulsion = 17713.245219 eV Total energy + Delta-G solvation = -3376.635166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.80965 -40.05779 -37.12971 -35.48099 -35.17935 -33.33041 -31.93881 -30.72856 -30.05963 -27.49135 -24.92539 -24.07770 -23.13571 -22.21459 -21.26877 -20.87524 -20.68430 -18.87567 -17.27651 -17.21610 -17.01464 -16.61536 -15.17726 -15.13790 -14.79573 -14.69958 -14.51565 -14.03600 -13.80479 -13.56795 -13.17718 -13.00727 -12.96637 -12.45577 -11.92269 -11.81805 -11.53991 -11.34573 -11.28020 -11.04148 -10.80786 -10.74293 -10.57898 -10.45704 -10.32350 -10.02345 -9.69608 -9.61109 -9.33128 -8.85547 -6.90689 -5.75520 -3.04001 0.43786 2.04506 2.05431 2.75235 2.83374 3.44684 3.48621 3.50024 3.74345 4.35276 4.51657 4.53312 4.63685 4.80535 4.91040 5.09238 5.16143 5.19791 5.32478 5.38573 5.51738 5.56739 5.63971 5.72156 5.76715 5.82347 5.89698 6.04770 6.09215 6.27765 6.28479 6.37059 6.44667 6.88528 6.92411 6.95281 7.18893 7.68838 7.70376 8.44002 9.54612 10.13703 10.48344 11.47578 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018512 B = 0.002870 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.176097 B = 9753.159293 C =10836.024599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.093 0.907 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.240 4.240 10 H 0.069 0.931 11 C -0.015 4.015 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.708 5.708 18 C 0.609 3.391 19 O -0.517 6.517 20 C -0.109 4.109 21 C 0.051 3.949 22 N -0.496 5.496 23 C 0.202 3.798 24 O -0.190 6.190 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.015 0.985 35 H 0.017 0.983 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.406 0.594 39 H 0.197 0.803 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.623 2.785 -19.685 24.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.112 0.888 4 C -0.165 4.165 5 C -0.154 4.154 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.371 4.371 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.359 5.359 18 C 0.394 3.606 19 O -0.394 6.394 20 C -0.165 4.165 21 C -0.091 4.091 22 N -0.224 5.224 23 C -0.023 4.023 24 O -0.076 6.076 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.242 0.758 39 H 0.214 0.786 40 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -14.508 3.654 -20.272 25.195 hybrid contribution 0.880 -0.889 1.046 1.631 sum -13.629 2.764 -19.226 23.728 Atomic orbital electron populations 1.22190 0.94944 1.02330 1.02768 1.21184 0.94042 0.97834 0.83343 0.88849 1.21955 0.96976 1.01044 0.96547 1.21536 0.93869 1.01216 0.98735 1.21724 0.97294 1.00279 0.97039 1.20646 0.90981 0.95342 0.90563 1.42377 1.05330 1.64982 1.25198 1.19215 0.83932 1.28496 1.05482 0.91285 1.24747 0.97747 1.00942 0.97672 1.69651 1.32883 1.40741 1.15142 0.86252 0.85085 0.77499 0.77277 1.21247 1.21650 1.21268 1.46044 1.66047 1.14458 1.09311 1.16338 0.77743 0.85617 0.80913 1.90904 1.50680 1.14003 1.83822 1.23264 1.11759 0.82426 0.99016 1.23632 0.97143 1.00574 0.87796 1.70475 1.18185 0.99648 1.34080 1.28477 0.96056 1.00435 0.77289 1.84515 1.62382 1.27143 1.33535 0.92323 0.91116 0.92150 0.89837 0.91186 0.92200 0.91859 0.91974 0.92101 0.96674 0.96560 0.78344 0.93476 0.75841 0.78607 0.72711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.48 37.16 0.35 -0.97 16 2 C 0.14 1.27 2.57 -67.93 -0.17 1.10 16 3 H 0.09 0.99 7.58 -51.93 -0.39 0.59 16 4 C -0.13 -1.17 4.75 -26.73 -0.13 -1.30 16 5 C -0.12 -1.38 5.10 -26.73 -0.14 -1.52 16 6 C -0.13 -1.96 5.33 -26.73 -0.14 -2.11 16 7 C 0.15 3.13 6.26 -4.04 -0.03 3.11 16 8 N -0.73 -19.20 5.60 -59.91 -0.34 -19.54 16 9 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 12 N -0.94 -28.70 13.06 55.49 0.72 -27.97 16 13 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 17 N -0.71 -6.50 4.53 -55.10 -0.25 -6.74 16 18 C 0.61 6.69 7.75 -12.83 -0.10 6.59 16 19 O -0.52 -7.05 16.55 5.20 0.09 -6.96 16 20 C -0.11 -1.08 7.18 -36.84 -0.26 -1.35 16 21 C 0.05 0.50 11.66 -17.42 -0.20 0.29 16 22 N -0.50 -4.66 11.26 -14.67 -0.17 -4.82 16 23 C 0.20 1.34 13.21 52.25 0.69 2.03 16 24 O -0.19 -1.59 10.57 4.44 0.05 -1.54 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.71 7.75 -51.93 -0.40 0.31 16 31 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.38 10.41 7.67 -40.82 -0.31 10.10 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.41 3.16 8.40 -40.82 -0.34 2.82 16 39 H 0.20 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.26 0.36 8.06 -52.49 -0.42 -0.06 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -34.73 346.31 -6.15 -40.87 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.07 Total: 5.57 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -0.38 Total: -1.74 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.03 Total: -59.08 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.13 Total: -8.51 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.73 -6.15 -40.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171953224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.190 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds