Wall clock time and date at job start Tue Mar 31 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47141 * 2 1 4 4 C 1.53001 * 109.47093 * 120.00191 * 2 1 3 5 5 C 1.52994 * 109.47427 * 184.99951 * 4 2 1 6 6 C 1.52998 * 109.47362 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47028 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.46830 * 180.02562 * 7 6 5 9 9 C 1.36938 * 119.99597 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00580 * 0.02562 * 9 8 7 11 11 C 1.38812 * 119.99736 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00148 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99966 * 180.02562 * 11 9 8 14 14 H 1.48509 * 109.47103 * 60.00302 * 13 11 9 15 15 H 1.48493 * 109.47460 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47257 * 300.00667 * 13 11 9 17 17 N 1.46500 * 109.46817 * 239.99748 * 2 1 3 18 18 C 1.34774 * 119.99813 * 85.00294 * 17 2 1 19 19 O 1.21684 * 120.00427 * 359.97438 * 18 17 2 20 20 C 1.46722 * 119.99727 * 179.97438 * 18 17 2 21 21 C 1.36347 * 126.63972 * 180.02562 * 20 18 17 22 22 N 1.33695 * 107.44949 * 179.97438 * 21 20 18 23 23 C 1.30620 * 108.99740 * 359.97438 * 22 21 20 24 24 O 1.33665 * 109.15088 * 0.23595 * 23 22 21 25 25 H 1.09000 * 109.47141 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47145 * 300.00072 * 1 2 3 27 27 H 1.09004 * 109.47107 * 60.00019 * 1 2 3 28 28 H 1.09005 * 109.46694 * 304.99811 * 4 2 1 29 29 H 1.09002 * 109.47601 * 64.99427 * 4 2 1 30 30 H 1.08997 * 109.47079 * 299.99978 * 5 4 2 31 31 H 1.09010 * 109.46877 * 59.99389 * 5 4 2 32 32 H 1.08997 * 109.47316 * 300.00212 * 6 5 4 33 33 H 1.08998 * 109.46905 * 59.99942 * 6 5 4 34 34 H 1.08997 * 109.47206 * 300.00231 * 7 6 5 35 35 H 1.08998 * 109.47364 * 60.00175 * 7 6 5 36 36 H 0.96992 * 120.00357 * 359.97438 * 8 7 6 37 37 H 0.96999 * 119.99612 * 179.97438 * 12 11 9 38 38 H 0.97005 * 120.00213 * 264.99438 * 17 2 1 39 39 H 1.07996 * 126.27611 * 359.97438 * 21 20 18 40 40 H 1.08002 * 125.42040 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 6 4.0747 -1.3341 2.5633 7 6 5.5995 -1.2256 2.6281 8 7 6.0878 -1.9163 3.8242 9 6 7.4299 -1.9527 4.0939 10 1 8.1284 -1.4719 3.4250 11 6 7.8925 -2.6066 5.2275 12 7 7.0413 -3.1921 6.0430 13 14 9.7232 -2.6556 5.5958 14 1 10.2350 -1.2698 5.7472 15 1 9.9551 -3.4095 6.8540 16 1 10.4351 -3.3268 4.4787 17 7 2.0183 -0.6907 -1.1962 18 6 2.1470 -0.0183 -2.3571 19 8 1.8573 1.1622 -2.4119 20 6 2.6366 -0.7099 -3.5549 21 6 2.8184 -0.1655 -4.7917 22 7 3.2763 -1.1333 -5.5924 23 6 3.3826 -2.2389 -4.9051 24 8 2.9916 -2.0127 -3.6472 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -0.2617 2.1370 29 1 1.7516 -1.7716 1.2057 30 1 3.9994 -1.0729 0.4260 31 1 3.8532 0.4370 1.3573 32 1 3.6401 -0.8743 3.4508 33 1 3.7863 -2.3844 2.5200 34 1 6.0345 -1.6852 1.7406 35 1 5.8876 -0.1753 2.6715 36 1 5.4605 -2.3478 4.4251 37 1 7.3647 -3.6494 6.8349 38 1 2.2491 -1.6319 -1.1526 39 1 2.6277 0.8596 -5.0729 40 1 3.7273 -3.1862 -5.2928 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171953224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:45 Heat of formation + Delta-G solvation = -46.362851 kcal Electronic energy + Delta-G solvation = -21091.037305 eV Core-core repulsion = 17713.245219 eV Total energy + Delta-G solvation = -3377.792086 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.44800 -40.88021 -38.12042 -36.90294 -35.98441 -34.80463 -33.16240 -32.07929 -30.93743 -28.83333 -26.05861 -25.37836 -23.83847 -23.57160 -22.18603 -22.00285 -21.62874 -19.59146 -19.12709 -17.92839 -17.87345 -17.40988 -16.69647 -16.32102 -15.94862 -15.55845 -15.32381 -15.28674 -15.25345 -14.69648 -14.42091 -14.20221 -14.08436 -13.28629 -13.06132 -12.89658 -12.84394 -12.59105 -12.46631 -12.32862 -12.20798 -12.00601 -11.89481 -11.84253 -11.54882 -11.42889 -11.34309 -10.94123 -10.41801 -10.04777 -9.02813 -7.97540 -5.27005 -0.24294 1.39661 1.41215 1.46077 1.49492 1.55862 1.97083 2.13908 2.54707 3.26879 3.35653 3.55282 3.76486 3.86050 4.00208 4.03939 4.12997 4.33213 4.38886 4.43367 4.57992 4.60482 4.63576 4.73971 4.86045 4.91230 4.97187 5.00102 5.06567 5.18916 5.25748 5.30878 5.36924 5.44552 5.50378 5.51920 6.23816 6.25419 6.52947 6.92015 7.31093 8.07614 8.31230 9.25941 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018512 B = 0.002870 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.176097 B = 9753.159293 C =10836.024599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 H 0.077 0.923 4 C -0.117 4.117 5 C -0.107 4.107 6 C -0.112 4.112 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.253 4.253 10 H 0.073 0.927 11 C -0.075 4.075 12 N -0.969 5.969 13 Si 0.976 3.024 14 H -0.278 1.278 15 H -0.292 1.292 16 H -0.276 1.276 17 N -0.699 5.699 18 C 0.608 3.392 19 O -0.552 6.552 20 C -0.128 4.128 21 C 0.047 3.953 22 N -0.528 5.528 23 C 0.225 3.775 24 O -0.192 6.192 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.016 0.984 35 H 0.013 0.987 36 H 0.374 0.626 37 H 0.253 0.747 38 H 0.414 0.586 39 H 0.200 0.800 40 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.543 1.958 -20.482 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.038 3.962 3 H 0.096 0.904 4 C -0.155 4.155 5 C -0.145 4.145 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.385 4.385 10 H 0.091 0.909 11 C -0.267 4.267 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.202 1.202 17 N -0.350 5.350 18 C 0.394 3.606 19 O -0.432 6.432 20 C -0.184 4.184 21 C -0.095 4.095 22 N -0.256 5.256 23 C 0.001 3.999 24 O -0.078 6.078 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.034 0.966 35 H 0.031 0.969 36 H 0.206 0.794 37 H 0.062 0.938 38 H 0.251 0.749 39 H 0.217 0.783 40 H 0.320 0.680 Dipole moment (debyes) X Y Z Total from point charges -14.434 2.832 -21.101 25.722 hybrid contribution 0.867 -0.666 1.207 1.628 sum -13.567 2.167 -19.894 24.177 Atomic orbital electron populations 1.22135 0.93808 1.03027 1.02682 1.21141 0.94854 0.96989 0.83172 0.90438 1.21862 0.94647 1.02059 0.96891 1.21441 0.95893 1.00321 0.96819 1.21598 0.93682 1.00961 0.98779 1.20857 0.94326 0.94266 0.88411 1.42618 1.04524 1.65404 1.26637 1.19628 0.85362 1.27974 1.05539 0.90930 1.25610 1.02315 1.01089 0.97722 1.69805 1.34819 1.41803 1.15564 0.85182 0.79738 0.77681 0.76988 1.20400 1.21811 1.20240 1.46014 1.65351 1.14762 1.08877 1.16461 0.77329 0.85289 0.81512 1.90876 1.52421 1.15463 1.84479 1.23009 1.13446 0.83221 0.98696 1.23815 0.96634 1.01083 0.87965 1.70504 1.19758 1.00538 1.34782 1.29627 0.92902 1.01168 0.76192 1.84520 1.62610 1.26277 1.34403 0.91193 0.89941 0.93521 0.88900 0.89785 0.91989 0.92331 0.92186 0.91880 0.96625 0.96897 0.79378 0.93830 0.74874 0.78264 0.67981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.48 71.98 0.68 -1.63 16 2 C 0.14 2.42 2.57 44.99 0.12 2.53 16 3 H 0.08 1.61 7.58 -2.39 -0.02 1.59 16 4 C -0.12 -1.91 4.75 30.59 0.15 -1.76 16 5 C -0.11 -2.39 5.10 30.59 0.16 -2.24 16 6 C -0.11 -3.39 5.33 30.60 0.16 -3.22 16 7 C 0.15 6.01 6.26 86.38 0.54 6.55 16 8 N -0.75 -39.24 5.60 -343.45 -1.92 -41.16 16 9 C -0.25 -14.56 9.99 84.03 0.84 -13.72 16 10 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 11 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 12 N -0.97 -59.84 13.06 21.65 0.28 -59.56 16 13 Si 0.98 46.43 29.55 68.60 2.03 48.46 16 14 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 15 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 N -0.70 -12.12 4.53 -446.46 -2.02 -14.14 16 18 C 0.61 13.27 7.75 86.46 0.67 13.94 16 19 O -0.55 -15.42 16.55 -4.30 -0.07 -15.49 16 20 C -0.13 -2.48 7.18 24.05 0.17 -2.30 16 21 C 0.05 0.91 11.66 83.97 0.98 1.89 16 22 N -0.53 -9.25 11.26 -315.09 -3.55 -12.80 16 23 C 0.23 2.43 13.21 130.42 1.72 4.15 16 24 O -0.19 -2.87 10.57 -7.04 -0.07 -2.95 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 0.82 8.14 -2.38 -0.02 0.81 16 28 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.37 7.75 -2.39 -0.02 1.36 16 31 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.37 20.55 7.67 -92.71 -0.71 19.84 16 37 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 38 H 0.41 5.77 8.40 -92.70 -0.78 4.99 16 39 H 0.20 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.31 -0.39 8.06 -2.91 -0.02 -0.41 16 Total: -1.00 -74.95 346.31 0.89 -74.06 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -0.44 Total: 23.30 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 6.65 Total: 0.27 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -7.21 Total: -127.66 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.15 Total: -18.43 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -74.95 0.89 -74.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171953224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.699 kcal (2) G-P(sol) polarization free energy of solvation -74.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds