Wall clock time and date at job start Tue Mar 31 2020 05:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 N 1.31134 * 126.55327 * 119.99952 * 4 2 1 6 6 C 1.34494 * 105.61744 * 180.02562 * 5 4 2 7 7 C 1.50692 * 126.28868 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47241 * 89.99912 * 7 6 5 9 9 O 1.21287 * 119.99800 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00366 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00274 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46993 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.46659 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47002 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99709 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00235 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99863 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00309 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47207 * 59.99617 * 18 16 14 20 20 H 1.48490 * 109.47270 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46661 * 299.99761 * 18 16 14 22 22 N 1.29949 * 107.42333 * 0.02562 * 6 5 4 23 23 O 1.21303 * 110.25188 * 359.70370 * 22 6 5 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.09000 * 109.47434 * 209.99816 * 7 6 5 32 32 H 1.08999 * 109.47193 * 330.00007 * 7 6 5 33 33 H 0.97002 * 120.00047 * 0.02562 * 10 8 7 34 34 H 1.08998 * 109.47587 * 300.00352 * 11 10 8 35 35 H 1.09008 * 109.46544 * 60.00489 * 11 10 8 36 36 H 1.09000 * 109.47740 * 300.00305 * 12 11 10 37 37 H 1.08999 * 109.47042 * 60.00592 * 12 11 10 38 38 H 1.09005 * 109.47284 * 299.99724 * 13 12 11 39 39 H 1.08999 * 109.47283 * 60.00282 * 13 12 11 40 40 H 0.97002 * 120.00207 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7893 -1.7808 1.2598 6 6 2.9811 -2.0529 2.5629 7 6 3.7883 -3.1939 3.1264 8 6 5.2171 -2.7534 3.3149 9 8 5.5475 -1.6242 3.0203 10 7 6.1278 -3.6141 3.8110 11 6 7.5169 -3.1861 3.9938 12 6 8.3362 -4.3441 4.5672 13 6 9.7867 -3.8968 4.7586 14 6 10.5939 -5.0375 5.3228 15 1 10.1195 -5.9865 5.5250 16 6 11.9376 -4.8695 5.5819 17 7 12.5151 -3.7137 5.3361 18 14 12.9379 -6.2833 6.2819 19 1 12.8946 -7.4329 5.3429 20 1 14.3458 -5.8492 6.4676 21 1 12.3685 -6.6918 7.5912 22 7 2.3424 -1.1512 3.2468 23 8 1.7953 -0.3673 2.5001 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 3.3710 -3.4945 4.0874 32 1 3.7561 -4.0372 2.4365 33 1 5.8637 -4.5174 4.0463 34 1 7.9343 -2.8862 3.0325 35 1 7.5493 -2.3423 4.6831 36 1 7.9187 -4.6436 5.5285 37 1 8.3038 -5.1882 3.8783 38 1 10.2045 -3.5972 3.7974 39 1 9.8188 -3.0529 5.4477 40 1 13.4605 -3.5955 5.5180 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175282972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:54 Heat of formation + Delta-G solvation = 1.262795 kcal Electronic energy + Delta-G solvation = -20887.249168 eV Core-core repulsion = 17511.522285 eV Total energy + Delta-G solvation = -3375.726883 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.75027 -39.61498 -36.66497 -36.04607 -35.35283 -33.37142 -32.32817 -31.32944 -29.80432 -27.71719 -26.64081 -24.57540 -23.92765 -22.93078 -21.05849 -20.69147 -19.83525 -18.32050 -17.55094 -16.84433 -16.47046 -16.32903 -15.61987 -15.48833 -14.82816 -14.48364 -14.19929 -13.87406 -13.81486 -13.62022 -12.93961 -12.72363 -12.43416 -12.29751 -12.18005 -11.94212 -11.85947 -11.67862 -11.62633 -11.53896 -11.15877 -10.89565 -10.75902 -10.64199 -10.22089 -9.90429 -9.88944 -9.40511 -9.14556 -8.86296 -8.38157 -6.02700 -4.06133 0.99759 2.00735 2.59402 2.64153 3.15949 3.31381 3.36195 3.37959 3.50121 3.80888 4.36995 4.43257 4.46561 4.47006 4.72852 4.88140 4.98326 5.10927 5.19742 5.25484 5.30703 5.32870 5.41324 5.56656 5.65614 5.69213 5.73660 5.74472 5.85186 6.12763 6.40747 6.56743 6.78321 6.97187 7.58834 7.61689 7.74129 7.95560 8.01536 8.26225 8.36726 9.00248 9.58039 11.08529 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.050057 B = 0.002280 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.228237 B =12275.690503 C =12548.341575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.001 3.999 3 C -0.153 4.153 4 C 0.183 3.817 5 N -0.472 5.472 6 C 0.193 3.807 7 C -0.054 4.054 8 C 0.515 3.485 9 O -0.536 6.536 10 N -0.722 5.722 11 C 0.117 3.883 12 C -0.121 4.121 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 N -0.374 5.374 23 O 0.082 5.918 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.400 0.600 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.191 5.111 -10.433 28.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 C -0.211 4.211 4 C -0.038 4.038 5 N -0.205 5.205 6 C -0.080 4.080 7 C -0.095 4.095 8 C 0.298 3.702 9 O -0.413 6.413 10 N -0.373 5.373 11 C -0.006 4.006 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 N -0.080 5.080 23 O 0.022 5.978 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.134 0.866 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.234 0.766 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.517 5.687 -9.905 27.957 hybrid contribution 0.597 -1.152 0.478 1.382 sum -24.920 4.536 -9.427 27.027 Atomic orbital electron populations 1.21918 0.92176 1.03104 1.03652 1.19851 0.96912 0.96003 0.89188 1.21927 1.02327 0.93251 1.03577 1.28782 0.94156 0.92060 0.88801 1.71838 1.15838 1.13949 1.18872 1.24861 0.99088 0.98178 0.85880 1.19946 0.91600 0.94174 1.03783 1.20064 0.86511 0.85762 0.77834 1.90742 1.80821 1.19704 1.50001 1.46112 1.10551 1.15595 1.65016 1.21687 0.78534 0.99039 1.01303 1.21896 0.98640 0.95824 0.99494 1.19031 0.88029 0.96925 0.97416 1.21159 0.94018 0.98216 1.42775 0.92667 1.25038 0.97998 0.95752 0.95720 1.69956 1.11597 1.23373 1.48332 0.86627 0.79117 0.82486 0.79573 1.20233 1.21267 1.20238 1.74609 1.12804 1.03275 1.17316 1.85250 1.54507 1.42539 1.15500 0.91415 0.91848 0.90398 0.86611 0.91400 0.91556 0.90388 0.86063 0.85619 0.76556 0.91646 0.91698 0.92639 0.92610 0.96263 0.96275 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.18 37.16 0.34 -0.32 16 2 C 0.00 0.00 3.39 -91.78 -0.31 -0.31 16 3 C -0.15 -0.87 9.18 37.16 0.34 -0.53 16 4 C 0.18 2.01 7.02 -13.05 -0.09 1.92 16 5 N -0.47 -6.37 11.55 -9.87 -0.11 -6.48 16 6 C 0.19 2.69 6.71 -156.37 -1.05 1.64 16 7 C -0.05 -0.60 6.33 -29.04 -0.18 -0.78 16 8 C 0.51 7.84 7.82 -10.99 -0.09 7.76 16 9 O -0.54 -10.73 16.03 5.55 0.09 -10.64 16 10 N -0.72 -10.18 5.56 -60.29 -0.33 -10.52 16 11 C 0.12 2.07 5.67 -4.04 -0.02 2.05 16 12 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 15 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 18 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 22 N -0.37 -5.40 12.16 30.90 0.38 -5.02 16 23 O 0.08 1.02 11.31 18.09 0.20 1.23 16 24 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.40 4.25 8.47 -40.82 -0.35 3.90 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -35.80 347.51 -6.81 -42.61 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -6.23 Total: -2.70 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -1.75 Total: -4.02 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.66 Total: -48.22 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.29 Total: -9.41 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.80 -6.81 -42.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175282972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.872 kcal (2) G-P(sol) polarization free energy of solvation -35.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds