Wall clock time and date at job start Tue Mar 31 2020 05:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 C 1.50699 * 109.47030 * 179.97438 * 16 14 13 18 18 N 1.29953 * 126.28390 * 90.03227 * 17 16 14 19 19 O 1.21302 * 110.25086 * 179.97438 * 18 17 16 20 20 C 1.33647 * 109.80826 * 359.97438 * 19 18 17 21 21 C 1.50702 * 126.54772 * 179.97438 * 20 19 18 22 22 C 1.53002 * 109.47213 * 299.97462 * 21 20 19 23 23 C 1.53005 * 109.46790 * 59.97421 * 21 20 19 24 24 N 1.31128 * 106.90109 * 359.76716 * 20 19 18 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 32 32 H 1.08998 * 109.47466 * 299.99891 * 16 14 13 33 33 H 1.09003 * 109.47620 * 60.00219 * 16 14 13 34 34 H 1.08997 * 109.47233 * 179.97438 * 21 20 19 35 35 H 1.08996 * 109.47037 * 60.00290 * 22 21 20 36 36 H 1.08999 * 109.46888 * 180.02562 * 22 21 20 37 37 H 1.08994 * 109.46940 * 299.99905 * 22 21 20 38 38 H 1.08997 * 109.46997 * 60.00125 * 23 21 20 39 39 H 1.08999 * 109.46930 * 179.97438 * 23 21 20 40 40 H 1.08997 * 109.47088 * 299.99911 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 6 -1.3610 3.8862 2.5231 18 7 -2.4632 3.2602 2.8096 19 8 -3.4198 3.9745 2.5950 20 6 -3.0060 5.1603 2.1378 21 6 -3.8780 6.3272 1.7518 22 6 -4.8185 5.9087 0.6199 23 6 -4.7023 6.7702 2.9623 24 7 -1.6963 5.1158 2.0935 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 0.0673 2.6129 3.4685 33 1 0.7277 4.1529 2.8680 34 1 -3.2515 7.1538 1.4167 35 1 -5.4451 5.0822 0.9550 36 1 -5.4489 6.7529 0.3404 37 1 -4.2313 5.5931 -0.2424 38 1 -4.0323 7.0684 3.7687 39 1 -5.3327 7.6145 2.6833 40 1 -5.3289 5.9436 3.2974 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175297613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:31 Heat of formation + Delta-G solvation = 11.079169 kcal Electronic energy + Delta-G solvation = -22151.869483 eV Core-core repulsion = 18776.568270 eV Total energy + Delta-G solvation = -3375.301213 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.47354 -39.10882 -36.45629 -35.80623 -34.92650 -32.48374 -31.95428 -31.01311 -29.31853 -27.56027 -26.83430 -24.33008 -23.64009 -22.89048 -21.01676 -19.91339 -19.35455 -18.08078 -17.34320 -16.94987 -16.09708 -15.76426 -15.30174 -14.91807 -14.59668 -14.33236 -13.64133 -13.59946 -13.14635 -12.86298 -12.65358 -12.57305 -12.38598 -12.01395 -11.76149 -11.72000 -11.39368 -11.36623 -11.34164 -11.23053 -10.99827 -10.88604 -10.81930 -10.33865 -10.18814 -9.86120 -9.63384 -9.08548 -9.02580 -8.50419 -7.85921 -6.12616 -4.22416 1.26685 2.32800 2.84073 3.25337 3.30270 3.31009 3.32695 3.57716 4.00765 4.21486 4.40247 4.54756 4.63971 4.73255 5.08602 5.18454 5.25592 5.31103 5.41903 5.45282 5.49176 5.51395 5.65064 5.81244 5.87954 5.91731 6.12661 6.39430 6.45964 6.66333 7.04036 7.19035 7.35640 7.42486 7.60811 7.71560 7.89022 8.17143 8.30028 8.61733 8.75800 9.08304 9.44679 10.92723 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032423 B = 0.003469 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.369118 B = 8069.386756 C = 8168.580382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.705 5.705 14 C 0.508 3.492 15 O -0.540 6.540 16 C -0.058 4.058 17 C 0.202 3.798 18 N -0.377 5.377 19 O 0.079 5.921 20 C 0.177 3.823 21 C 0.002 3.998 22 C -0.152 4.152 23 C -0.150 4.150 24 N -0.471 5.471 25 H 0.048 0.952 26 H 0.037 0.963 27 H 0.023 0.977 28 H 0.032 0.968 29 H 0.099 0.901 30 H 0.265 0.735 31 H 0.390 0.610 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.920 10.659 10.434 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.291 3.709 15 O -0.419 6.419 16 C -0.100 4.100 17 C -0.071 4.071 18 N -0.083 5.083 19 O 0.019 5.981 20 C -0.044 4.044 21 C -0.018 4.018 22 C -0.210 4.210 23 C -0.208 4.208 24 N -0.204 5.204 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.222 0.778 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.026 9.834 9.786 19.031 hybrid contribution 1.302 -0.032 0.184 1.316 sum -11.724 9.802 9.970 18.246 Atomic orbital electron populations 1.21831 0.98372 0.98045 1.01141 1.21937 0.92539 0.99797 1.02333 1.18797 0.94226 0.89141 0.80809 0.93321 1.21191 0.90622 1.39187 1.06371 0.92052 1.24894 0.98653 0.94775 0.95360 1.69889 1.35253 1.37500 1.09311 0.86501 0.84783 0.78324 0.77452 1.20146 1.21136 1.20162 1.46428 1.14205 1.55885 1.18782 1.19841 0.83226 0.79633 0.88197 1.90701 1.51369 1.59518 1.40279 1.20058 0.88260 1.01931 0.99774 1.24932 0.96790 0.87342 0.98069 1.74596 0.95606 1.16603 1.21502 1.85236 1.31689 1.21114 1.60032 1.28725 0.90388 0.89742 0.95523 1.19810 0.94622 0.90081 0.97332 1.21916 0.99062 1.02677 0.97367 1.21909 0.99961 1.02394 0.96510 1.71835 1.09974 1.19149 1.19439 0.93289 0.94396 0.95820 0.94963 0.88242 0.92486 0.77788 0.86746 0.86223 0.86721 0.91460 0.90551 0.91524 0.91904 0.90549 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.16 0.32 -2.86 16 2 C -0.13 -3.14 5.45 -26.74 -0.15 -3.29 16 3 C 0.27 6.88 2.24 -69.08 -0.15 6.72 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -14.11 8.73 -34.44 -0.30 -14.41 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.85 11.30 55.43 0.63 -24.22 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.70 -14.55 5.02 -54.94 -0.28 -14.83 16 14 C 0.51 10.30 6.39 -10.99 -0.07 10.23 16 15 O -0.54 -13.18 13.17 5.56 0.07 -13.10 16 16 C -0.06 -0.90 6.33 -29.04 -0.18 -1.09 16 17 C 0.20 3.46 6.71 -156.37 -1.05 2.41 16 18 N -0.38 -6.49 12.16 30.90 0.38 -6.12 16 19 O 0.08 1.17 11.31 18.09 0.20 1.38 16 20 C 0.18 2.38 7.02 -13.06 -0.09 2.29 16 21 C 0.00 0.02 3.39 -91.77 -0.31 -0.30 16 22 C -0.15 -1.16 9.18 37.16 0.34 -0.82 16 23 C -0.15 -0.92 9.18 37.16 0.34 -0.58 16 24 N -0.47 -7.72 11.55 -9.86 -0.11 -7.83 16 25 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 26 H 0.04 0.87 5.64 -51.93 -0.29 0.57 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 30 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.39 6.79 8.54 -40.82 -0.35 6.44 16 32 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 334.94 15.07 5.05 5.05 Total: -1.00 -33.11 334.94 -6.43 -39.54 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.94 Total: 4.53 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.40 Total: 0.02 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.61 Total: -53.00 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.28 Total: -11.72 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.11 -6.43 -39.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175297613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.620 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds