Wall clock time and date at job start Tue Mar 31 2020 05:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47302 * 2 1 4 4 C 1.35345 * 117.00088 * 184.67590 * 3 2 1 5 5 C 1.38998 * 126.40818 * 95.32249 * 4 3 2 6 6 C 1.46922 * 126.49388 * 359.97438 * 5 4 3 7 7 O 1.21673 * 119.99770 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00210 * 179.72647 * 6 5 4 9 9 C 1.46496 * 120.00325 * 180.27515 * 8 6 5 10 10 H 1.08999 * 109.46584 * 35.00377 * 9 8 6 11 11 C 1.50696 * 109.47103 * 154.99977 * 9 8 6 12 12 H 1.08006 * 120.00202 * 0.02562 * 11 9 8 13 13 C 1.37881 * 120.00223 * 180.02562 * 11 9 8 14 14 N 1.31513 * 119.99597 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00157 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47155 * 59.99653 * 15 13 11 17 17 H 1.48504 * 109.47067 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47174 * 299.99803 * 15 13 11 19 19 C 1.52992 * 109.47120 * 275.00211 * 9 8 6 20 20 C 1.53000 * 109.47383 * 64.99909 * 19 9 8 21 21 C 1.41462 * 107.00765 * 180.26315 * 5 4 3 22 22 N 1.30318 * 108.13661 * 359.58817 * 21 5 4 23 23 N 1.34659 * 126.40343 * 275.34390 * 4 3 2 24 24 C 1.46497 * 125.74491 * 359.97438 * 23 4 3 25 25 H 1.09006 * 109.47436 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47137 * 299.99999 * 1 2 3 27 27 H 1.08998 * 109.47018 * 59.99761 * 1 2 3 28 28 H 1.08999 * 109.47137 * 240.00001 * 2 1 3 29 29 H 1.09005 * 109.46805 * 119.99987 * 2 1 3 30 30 H 0.97000 * 119.99715 * 0.27698 * 8 6 5 31 31 H 0.97000 * 120.00145 * 180.02562 * 14 13 11 32 32 H 1.09007 * 109.46915 * 185.00137 * 19 9 8 33 33 H 1.09003 * 109.47181 * 304.99762 * 19 9 8 34 34 H 1.09005 * 109.47284 * 179.97438 * 20 19 9 35 35 H 1.08998 * 109.47107 * 299.99870 * 20 19 9 36 36 H 1.09003 * 109.47081 * 59.99792 * 20 19 9 37 37 H 1.08002 * 125.92905 * 179.75847 * 21 5 4 38 38 H 1.09002 * 109.47538 * 94.36337 * 24 23 4 39 39 H 1.09009 * 109.47279 * 214.35891 * 24 23 4 40 40 H 1.09000 * 109.47412 * 334.36131 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3444 1.5259 -0.0983 5 6 4.0609 1.7679 -1.2645 6 6 3.5096 1.8774 -2.6220 7 8 2.3131 1.7531 -2.8045 8 7 4.3284 2.1215 -3.6643 9 6 3.7780 2.2367 -5.0170 10 1 2.7958 2.7072 -4.9706 11 6 4.6982 3.0775 -5.8638 12 1 5.6029 3.4850 -5.4372 13 6 4.3853 3.3267 -7.1833 14 7 3.2840 2.8302 -7.7029 15 14 5.5264 4.3683 -8.2332 16 1 6.8641 3.7267 -8.2967 17 1 4.9683 4.4852 -9.6044 18 1 5.6541 5.7208 -7.6333 19 6 3.6474 0.8432 -5.6348 20 6 2.6182 0.0303 -4.8469 21 6 5.4223 1.8820 -0.8976 22 7 5.5086 1.7286 0.3937 23 7 4.2304 1.5020 0.9154 24 6 3.9099 1.2769 2.3271 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.2823 2.2209 -3.5187 31 1 3.0640 3.0051 -8.6313 32 1 3.3223 0.9343 -6.6713 33 1 4.6129 0.3384 -5.6000 34 1 2.5249 -0.9624 -5.2874 35 1 2.9434 -0.0608 -3.8106 36 1 1.6528 0.5351 -4.8817 37 1 6.2467 2.0671 -1.5703 38 1 4.0306 0.2195 2.5630 39 1 4.5814 1.8672 2.9508 40 1 2.8794 1.5763 2.5180 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194382600.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:16 Heat of formation + Delta-G solvation = -0.084374 kcal Electronic energy + Delta-G solvation = -22738.874248 eV Core-core repulsion = 19363.088947 eV Total energy + Delta-G solvation = -3375.785301 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40572 -38.44745 -38.20600 -34.86561 -33.43189 -32.19250 -31.79175 -30.85060 -29.09152 -27.41062 -26.46382 -23.44697 -23.09201 -22.25654 -21.00496 -20.05965 -19.16995 -18.27789 -16.92260 -16.30157 -15.84894 -15.62184 -15.12915 -14.56747 -14.47225 -14.27316 -14.24120 -13.74946 -13.11491 -12.88340 -12.72952 -12.63857 -12.56279 -12.17144 -11.84689 -11.64051 -11.40537 -11.18440 -11.06212 -10.91523 -10.75756 -10.26044 -10.14893 -10.02359 -9.55590 -9.39865 -8.98847 -8.88117 -8.45020 -8.41788 -7.65182 -6.05558 -4.14286 1.37513 2.15497 2.36124 3.30420 3.35479 3.36938 3.47969 4.14226 4.23786 4.38689 4.64457 4.83062 4.90741 4.99614 5.03620 5.16828 5.22283 5.25860 5.29714 5.45555 5.55239 5.80222 6.01568 6.04649 6.23283 6.45558 6.47707 6.53735 6.74027 7.12545 7.28392 7.44271 7.45878 7.54568 7.58594 7.70694 7.84761 8.00259 8.26275 8.81079 8.88869 9.31214 9.53931 10.99817 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022971 B = 0.004700 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.625639 B = 5956.001401 C = 6827.143697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.068 3.932 3 O -0.294 6.294 4 C 0.310 3.690 5 C -0.280 4.280 6 C 0.578 3.422 7 O -0.546 6.546 8 N -0.705 5.705 9 C 0.273 3.727 10 H 0.049 0.951 11 C -0.532 4.532 12 H 0.061 0.939 13 C 0.067 3.933 14 N -0.883 5.883 15 Si 0.900 3.100 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.127 4.127 20 C -0.136 4.136 21 C 0.089 3.911 22 N -0.286 5.286 23 N -0.378 5.378 24 C 0.096 3.904 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.386 0.614 31 H 0.264 0.736 32 H 0.098 0.902 33 H 0.030 0.970 34 H 0.020 0.980 35 H 0.038 0.962 36 H 0.049 0.951 37 H 0.195 0.805 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.151 -6.148 17.194 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.008 4.008 3 O -0.203 6.203 4 C 0.138 3.862 5 C -0.296 4.296 6 C 0.364 3.636 7 O -0.425 6.425 8 N -0.352 5.352 9 C 0.171 3.829 10 H 0.067 0.933 11 C -0.571 4.571 12 H 0.079 0.921 13 C -0.136 4.136 14 N -0.521 5.521 15 Si 0.728 3.272 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.166 4.166 20 C -0.193 4.193 21 C -0.097 4.097 22 N -0.110 5.110 23 N -0.168 5.168 24 C -0.045 4.045 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.049 0.951 34 H 0.039 0.961 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.212 0.788 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.329 -6.163 17.969 19.000 hybrid contribution 0.684 0.455 -1.072 1.351 sum 0.355 -5.708 16.897 17.839 Atomic orbital electron populations 1.21738 0.92309 1.02666 1.03851 1.22817 0.96270 0.80807 1.00857 1.86032 1.13464 1.28223 1.92565 1.19287 0.82097 0.97826 0.87015 1.20514 0.93233 1.21506 0.94315 1.16937 0.86449 0.77602 0.82659 1.90763 1.14786 1.51688 1.85272 1.46262 1.09803 1.70497 1.08657 1.18741 0.95680 0.92954 0.75485 0.93280 1.21216 1.07958 1.32129 0.95775 0.92132 1.24872 0.95330 0.95788 0.97647 1.69887 1.23694 1.44098 1.14379 0.86537 0.80731 0.80716 0.79265 1.20199 1.21223 1.20218 1.21929 0.96025 0.95957 1.02664 1.21830 1.00634 0.97677 0.99172 1.23977 0.96448 0.96764 0.92553 1.77148 0.97581 1.25010 1.11215 1.48890 1.04976 1.55517 1.07437 1.21900 1.02816 1.02765 0.77008 0.90474 0.91954 0.90508 0.91581 0.93411 0.78232 0.92604 0.88381 0.95095 0.96102 0.94289 0.93162 0.78806 0.90693 0.88936 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 37.16 0.38 -1.17 16 2 C 0.07 0.84 6.77 37.16 0.25 1.09 16 3 O -0.29 -4.62 9.38 -24.99 -0.23 -4.86 16 4 C 0.31 5.01 6.98 -16.03 -0.11 4.89 16 5 C -0.28 -4.94 6.15 -104.87 -0.64 -5.59 16 6 C 0.58 12.22 6.36 -12.75 -0.08 12.13 16 7 O -0.55 -13.14 13.52 -2.05 -0.03 -13.17 16 8 N -0.70 -15.01 5.01 -56.17 -0.28 -15.29 16 9 C 0.27 6.94 2.24 -69.09 -0.15 6.78 16 10 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 11 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 12 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 13 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 14 N -0.88 -24.83 11.29 55.43 0.63 -24.20 16 15 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 20 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 21 C 0.09 1.32 11.50 -16.97 -0.20 1.12 16 22 N -0.29 -4.18 12.48 30.88 0.39 -3.79 16 23 N -0.38 -5.13 3.99 -67.67 -0.27 -5.40 16 24 C 0.10 0.82 11.41 59.85 0.68 1.50 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.39 7.09 7.49 -40.82 -0.31 6.79 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.10 2.65 5.95 -51.92 -0.31 2.34 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.04 0.86 5.64 -51.93 -0.29 0.56 16 36 H 0.05 1.20 7.84 -51.93 -0.41 0.80 16 37 H 0.20 2.25 7.50 -52.49 -0.39 1.86 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.09 0.66 8.03 -51.93 -0.42 0.24 16 LS Contribution 335.56 15.07 5.06 5.06 Total: -1.00 -32.60 335.56 -5.73 -38.33 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.86 Total: 5.58 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -0.10 Total: 2.07 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.46 Total: -48.69 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.26 Total: -18.02 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.60 -5.73 -38.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194382600.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.245 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds