Wall clock time and date at job start Tue Mar 31 2020 05:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21481 * 120.00188 * 0.02562 * 14 13 3 16 16 C 1.48459 * 119.99875 * 179.97438 * 14 13 3 17 17 N 1.30668 * 126.40438 * 359.69150 * 16 14 13 18 18 O 1.21289 * 110.10475 * 179.86802 * 17 16 14 19 19 C 1.33685 * 110.01599 * 0.39733 * 18 17 16 20 20 C 1.50707 * 126.44544 * 179.75434 * 19 18 17 21 21 C 1.53000 * 109.46918 * 240.00000 * 20 19 18 22 22 C 1.53002 * 109.47219 * 359.97438 * 20 19 18 23 23 C 1.52996 * 109.47051 * 120.00126 * 20 19 18 24 24 N 1.30944 * 107.10978 * 359.75553 * 19 18 17 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 32 32 H 1.09003 * 109.47121 * 59.99980 * 21 20 19 33 33 H 1.08999 * 109.47241 * 179.97438 * 21 20 19 34 34 H 1.09001 * 109.47331 * 300.00005 * 21 20 19 35 35 H 1.09007 * 109.46764 * 59.99921 * 22 20 19 36 36 H 1.08997 * 109.47156 * 179.97438 * 22 20 19 37 37 H 1.09003 * 109.47342 * 300.00340 * 22 20 19 38 38 H 1.08996 * 109.47472 * 60.00363 * 23 20 19 39 39 H 1.09009 * 109.46681 * 180.02562 * 23 20 19 40 40 H 1.08997 * 109.47134 * 299.99587 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3409 2.6318 0.4329 16 6 0.0423 3.3276 2.6357 17 7 0.7710 3.4295 3.7155 18 8 0.1616 4.0310 4.5745 19 6 -1.0486 4.3740 4.1219 20 6 -2.1095 5.1258 4.8838 21 6 -3.3690 4.2635 4.9895 22 6 -1.5954 5.4509 6.2877 23 6 -2.4415 6.4255 4.1480 24 7 -1.1388 3.9340 2.8919 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 -3.1325 3.3376 5.5137 33 1 -4.1362 4.8070 5.5410 34 1 -3.7355 4.0315 3.9895 35 1 -0.6979 6.0650 6.2127 36 1 -2.3625 5.9950 6.8386 37 1 -1.3591 4.5247 6.8117 38 1 -2.8080 6.1935 3.1481 39 1 -3.2085 6.9694 4.6995 40 1 -1.5443 7.0397 4.0728 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196995463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:20 Heat of formation + Delta-G solvation = 15.324691 kcal Electronic energy + Delta-G solvation = -22348.712963 eV Core-core repulsion = 18973.595850 eV Total energy + Delta-G solvation = -3375.117114 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.62493 -39.10859 -37.70756 -35.62514 -34.97081 -32.68046 -31.76475 -30.78533 -27.84981 -27.66554 -27.21591 -25.07017 -24.22334 -23.01301 -21.51353 -20.02590 -19.39200 -18.19422 -17.89164 -16.93478 -16.01064 -15.55552 -15.30768 -14.66734 -14.47244 -14.45553 -14.33562 -13.40843 -12.90948 -12.77044 -12.73759 -12.49124 -12.32029 -12.04102 -12.00218 -11.74079 -11.59787 -11.32742 -11.30695 -11.27377 -11.06294 -10.99055 -10.88552 -10.37341 -10.26351 -10.01007 -9.71995 -9.49899 -9.11424 -8.56220 -8.00304 -6.16924 -4.26631 0.98981 1.85126 2.61182 3.13346 3.22533 3.30731 3.34610 3.64579 3.85223 4.26647 4.38921 4.43986 4.46900 4.69530 5.14431 5.17878 5.22496 5.25648 5.39577 5.44037 5.47077 5.49247 5.62568 5.77698 5.90085 5.91290 5.99883 6.34388 6.40380 6.59113 6.98038 7.11013 7.19983 7.30723 7.53036 7.64381 7.80437 8.05627 8.09458 8.48977 8.65973 8.89276 9.40110 10.88645 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031047 B = 0.003808 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.630920 B = 7351.981655 C = 7835.639920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.270 3.730 4 H 0.055 0.945 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.683 5.683 14 C 0.590 3.410 15 O -0.508 6.508 16 C 0.145 3.855 17 N -0.354 5.354 18 O 0.091 5.909 19 C 0.177 3.823 20 C 0.032 3.968 21 C -0.142 4.142 22 C -0.150 4.150 23 C -0.142 4.142 24 N -0.435 5.435 25 H 0.052 0.948 26 H 0.035 0.965 27 H 0.026 0.974 28 H 0.034 0.966 29 H 0.104 0.896 30 H 0.265 0.735 31 H 0.396 0.604 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.347 9.013 16.282 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.072 0.928 5 C -0.574 4.574 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.332 5.332 14 C 0.369 3.631 15 O -0.382 6.382 16 C -0.130 4.130 17 N -0.060 5.060 18 O 0.025 5.975 19 C -0.044 4.044 20 C 0.030 3.970 21 C -0.200 4.200 22 C -0.208 4.208 23 C -0.200 4.200 24 N -0.168 5.168 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.229 0.771 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.238 8.423 14.948 19.980 hybrid contribution 1.277 0.007 0.385 1.334 sum -8.961 8.430 15.333 19.658 Atomic orbital electron populations 1.21862 0.98267 0.98406 1.01174 1.21964 0.92666 0.99428 1.02684 1.18988 0.94735 0.89337 0.79975 0.92764 1.21232 0.90292 1.39349 1.06555 0.91817 1.24880 0.98831 0.94624 0.95239 1.69901 1.35158 1.37468 1.09300 0.86354 0.84535 0.77835 0.78180 1.19677 1.20776 1.20804 1.46442 1.13201 1.54250 1.19330 1.16449 0.83865 0.79726 0.83074 1.90804 1.51291 1.58750 1.37340 1.26284 0.87997 1.01626 0.97054 1.74936 1.19291 1.12293 0.99520 1.85267 1.24259 1.51527 1.36404 1.28954 0.87925 0.97344 0.90218 1.19259 0.89367 0.94341 0.94065 1.21941 0.94901 0.99347 1.03807 1.21974 1.02217 1.02973 0.93599 1.21941 1.02503 0.94225 1.01342 1.71973 1.20451 1.12642 1.11695 0.92900 0.94616 0.95451 0.94751 0.87819 0.92484 0.77076 0.91930 0.90512 0.90848 0.91389 0.90523 0.91392 0.90839 0.90518 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.51 37.16 0.32 -2.87 16 2 C -0.13 -3.16 5.45 -26.74 -0.15 -3.31 16 3 C 0.27 6.92 2.24 -69.08 -0.15 6.77 16 4 H 0.05 1.58 7.58 -51.93 -0.39 1.18 16 5 C -0.54 -14.29 8.73 -34.44 -0.30 -14.59 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.53 11.30 55.43 0.63 -23.90 16 9 Si 0.90 20.67 29.54 -169.99 -5.02 15.64 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 13 N -0.68 -15.27 5.02 -55.68 -0.28 -15.55 16 14 C 0.59 13.09 6.42 -12.05 -0.08 13.01 16 15 O -0.51 -12.65 14.23 5.38 0.08 -12.57 16 16 C 0.15 2.78 8.01 -156.18 -1.25 1.53 16 17 N -0.35 -6.05 11.89 30.92 0.37 -5.68 16 18 O 0.09 1.28 10.75 18.00 0.19 1.48 16 19 C 0.18 2.32 6.59 -13.00 -0.09 2.24 16 20 C 0.03 0.27 0.99 -155.66 -0.15 0.11 16 21 C -0.14 -1.06 8.45 37.16 0.31 -0.75 16 22 C -0.15 -0.90 8.06 37.16 0.30 -0.60 16 23 C -0.14 -1.07 8.46 37.16 0.31 -0.76 16 24 N -0.44 -7.47 11.57 -9.94 -0.11 -7.59 16 25 H 0.05 1.27 7.84 -51.93 -0.41 0.86 16 26 H 0.03 0.81 5.64 -51.93 -0.29 0.51 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.10 2.78 5.95 -51.93 -0.31 2.47 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.40 8.13 8.27 -40.82 -0.34 7.79 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 333.72 15.07 5.03 5.03 Total: -1.00 -30.75 333.72 -6.07 -36.83 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.93 Total: 3.81 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -1.02 Total: 2.50 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.60 Total: -52.72 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.27 Total: -11.10 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.75 -6.07 -36.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196995463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.154 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds