Wall clock time and date at job start Tue Mar 31 2020 05:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21481 * 120.00188 * 0.02562 * 14 13 3 16 16 C 1.48459 * 119.99875 * 179.97438 * 14 13 3 17 17 N 1.30668 * 126.40438 * 359.69150 * 16 14 13 18 18 O 1.21289 * 110.10475 * 179.86802 * 17 16 14 19 19 C 1.33685 * 110.01599 * 0.39733 * 18 17 16 20 20 C 1.50707 * 126.44544 * 179.75434 * 19 18 17 21 21 C 1.53000 * 109.46918 * 240.00000 * 20 19 18 22 22 C 1.53002 * 109.47219 * 359.97438 * 20 19 18 23 23 C 1.52996 * 109.47051 * 120.00126 * 20 19 18 24 24 N 1.30944 * 107.10978 * 359.75553 * 19 18 17 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 32 32 H 1.09003 * 109.47121 * 59.99980 * 21 20 19 33 33 H 1.08999 * 109.47241 * 179.97438 * 21 20 19 34 34 H 1.09001 * 109.47331 * 300.00005 * 21 20 19 35 35 H 1.09007 * 109.46764 * 59.99921 * 22 20 19 36 36 H 1.08997 * 109.47156 * 179.97438 * 22 20 19 37 37 H 1.09003 * 109.47342 * 300.00340 * 22 20 19 38 38 H 1.08996 * 109.47472 * 60.00363 * 23 20 19 39 39 H 1.09009 * 109.46681 * 180.02562 * 23 20 19 40 40 H 1.08997 * 109.47134 * 299.99587 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3409 2.6318 0.4329 16 6 0.0423 3.3276 2.6357 17 7 0.7710 3.4295 3.7155 18 8 0.1616 4.0310 4.5745 19 6 -1.0486 4.3740 4.1219 20 6 -2.1095 5.1258 4.8838 21 6 -3.3690 4.2635 4.9895 22 6 -1.5954 5.4509 6.2877 23 6 -2.4415 6.4255 4.1480 24 7 -1.1388 3.9340 2.8919 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 -3.1325 3.3376 5.5137 33 1 -4.1362 4.8070 5.5410 34 1 -3.7355 4.0315 3.9895 35 1 -0.6979 6.0650 6.2127 36 1 -2.3625 5.9950 6.8386 37 1 -1.3591 4.5247 6.8117 38 1 -2.8080 6.1935 3.1481 39 1 -3.2085 6.9694 4.6995 40 1 -1.5443 7.0397 4.0728 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196995463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:19 Heat of formation + Delta-G solvation = -6.574992 kcal Electronic energy + Delta-G solvation = -22349.662605 eV Core-core repulsion = 18973.595850 eV Total energy + Delta-G solvation = -3376.066755 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.93944 -40.93361 -38.47285 -37.28721 -36.56460 -34.56287 -33.36000 -32.48931 -29.28446 -28.32787 -28.24770 -26.63012 -25.35042 -24.93688 -22.94310 -21.65975 -21.06015 -19.49836 -19.32665 -18.45718 -17.71093 -17.33209 -16.52186 -16.41159 -16.29338 -15.30502 -15.07531 -14.98263 -14.68051 -14.16624 -14.00188 -13.65502 -13.40724 -13.25854 -13.00960 -12.97592 -12.81029 -12.77641 -12.73784 -12.59983 -12.32416 -12.26450 -12.15114 -12.09303 -11.90160 -11.70201 -11.36740 -11.21196 -11.15393 -10.61560 -9.93300 -8.22268 -6.40324 -0.32048 0.52748 1.42454 1.42870 1.52885 1.56249 1.64286 1.94856 2.38260 2.62522 2.95257 3.07635 3.70448 3.83674 3.85626 3.95196 4.29586 4.40221 4.46824 4.62193 4.67510 4.75871 4.79311 4.84846 4.95176 4.96763 4.97351 5.03613 5.14979 5.26556 5.28639 5.31840 5.33818 5.42607 5.50974 5.65731 5.75105 6.04804 6.51403 6.63408 6.87168 7.04511 7.31839 8.83727 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031047 B = 0.003808 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.630920 B = 7351.981655 C = 7835.639920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.010 0.990 5 C -0.554 4.554 6 H 0.069 0.931 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.974 3.026 10 H -0.264 1.264 11 H -0.275 1.275 12 H -0.281 1.281 13 N -0.680 5.680 14 C 0.591 3.409 15 O -0.543 6.543 16 C 0.120 3.880 17 N -0.354 5.354 18 O 0.114 5.886 19 C 0.198 3.802 20 C 0.030 3.970 21 C -0.141 4.141 22 C -0.148 4.148 23 C -0.141 4.141 24 N -0.465 5.465 25 H 0.032 0.968 26 H 0.033 0.967 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.268 0.732 31 H 0.405 0.595 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.111 0.889 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.384 9.961 19.002 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.028 0.972 5 C -0.592 4.592 6 H 0.088 0.912 7 C -0.180 4.180 8 N -0.548 5.548 9 Si 0.798 3.202 10 H -0.188 1.188 11 H -0.201 1.201 12 H -0.207 1.207 13 N -0.329 5.329 14 C 0.373 3.627 15 O -0.419 6.419 16 C -0.154 4.154 17 N -0.057 5.057 18 O 0.043 5.957 19 C -0.023 4.023 20 C 0.028 3.972 21 C -0.199 4.199 22 C -0.205 4.205 23 C -0.199 4.199 24 N -0.197 5.197 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.240 0.760 32 H 0.080 0.920 33 H 0.130 0.870 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.130 0.870 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.272 9.367 17.674 22.486 hybrid contribution 1.191 -0.202 -0.369 1.263 sum -9.081 9.165 17.305 21.585 Atomic orbital electron populations 1.21706 0.96982 0.99658 1.00035 1.21817 0.93718 0.98584 1.01906 1.18647 0.94372 0.89479 0.79920 0.97226 1.21513 0.90808 1.39748 1.07115 0.91244 1.25745 1.03544 0.94020 0.94733 1.70031 1.37132 1.37893 1.09775 0.85274 0.78700 0.78029 0.78206 1.18784 1.20074 1.20705 1.46197 1.13756 1.54348 1.18641 1.16680 0.83150 0.79040 0.83853 1.90773 1.52146 1.59955 1.39035 1.25615 0.89476 1.03750 0.96554 1.74909 1.19531 1.12103 0.99156 1.85250 1.24635 1.50613 1.35239 1.30042 0.87730 0.95345 0.89168 1.19750 0.88220 0.94169 0.95056 1.21983 0.95104 0.99744 1.03040 1.22027 1.03236 1.03493 0.91742 1.21984 1.03438 0.93877 1.00613 1.71945 1.20044 1.13875 1.13843 0.94909 0.94838 0.92859 0.93891 0.89964 0.92268 0.75956 0.92021 0.87016 0.93062 0.91344 0.87438 0.91273 0.93070 0.87004 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.90 8.51 71.98 0.61 -5.28 16 2 C -0.12 -6.12 5.45 30.59 0.17 -5.95 16 3 C 0.28 14.74 2.24 44.24 0.10 14.84 16 4 H 0.01 0.61 7.58 -2.39 -0.02 0.59 16 5 C -0.55 -29.98 8.73 25.60 0.22 -29.76 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.02 1.10 5.29 84.65 0.45 1.55 16 8 N -0.91 -51.76 11.30 21.45 0.24 -51.52 16 9 Si 0.97 42.35 29.54 68.60 2.03 44.37 16 10 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 13 N -0.68 -31.26 5.02 -448.39 -2.25 -33.51 16 14 C 0.59 27.17 6.42 86.97 0.56 27.73 16 15 O -0.54 -28.34 14.23 -3.66 -0.05 -28.39 16 16 C 0.12 4.63 8.01 137.34 1.10 5.73 16 17 N -0.35 -11.88 11.89 -59.38 -0.71 -12.59 16 18 O 0.11 3.03 10.75 74.46 0.80 3.83 16 19 C 0.20 4.94 6.59 88.36 0.58 5.52 16 20 C 0.03 0.43 0.99 -52.93 -0.05 0.38 16 21 C -0.14 -1.75 8.45 71.98 0.61 -1.15 16 22 C -0.15 -1.20 8.06 71.98 0.58 -0.62 16 23 C -0.14 -1.79 8.46 71.98 0.61 -1.18 16 24 N -0.47 -16.05 11.57 -302.79 -3.50 -19.55 16 25 H 0.03 1.62 7.84 -2.39 -0.02 1.60 16 26 H 0.03 1.54 5.64 -2.39 -0.01 1.53 16 27 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.08 4.54 5.95 -2.39 -0.01 4.52 16 30 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 31 H 0.41 16.89 8.27 -92.71 -0.77 16.13 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.58 8.14 -2.38 -0.02 0.57 16 36 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -69.02 333.72 2.38 -66.64 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.28 Total: 18.90 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 5.54 Total: 11.82 kcal Atomic # 7 Polarization: -110.95 SS G_CDS: -6.22 Total: -117.17 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: 0.75 Total: -24.56 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -69.02 2.38 -66.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196995463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.069 kcal (2) G-P(sol) polarization free energy of solvation -69.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds