Wall clock time and date at job start Tue Mar 31 2020 05:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45195 * 109.47320 * 2 1 4 4 C 1.34224 * 117.00529 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99438 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00348 * 179.97438 * 4 3 2 7 7 N 1.46899 * 109.47210 * 178.82383 * 6 4 3 8 8 C 1.46900 * 111.00085 * 160.57260 * 7 6 4 9 9 C 1.50694 * 109.46920 * 287.64189 * 8 7 6 10 10 H 1.08002 * 120.00415 * 356.59219 * 9 8 7 11 11 C 1.37881 * 119.99913 * 176.59057 * 9 8 7 12 12 N 1.31519 * 119.99805 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00115 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47036 * 90.00056 * 13 11 9 15 15 H 1.48502 * 109.47245 * 209.99963 * 13 11 9 16 16 H 1.48502 * 109.47182 * 330.00235 * 13 11 9 17 17 C 1.46905 * 111.00028 * 284.52726 * 7 6 4 18 18 C 1.50701 * 109.47058 * 169.99927 * 17 7 6 19 19 C 1.35308 * 126.12625 * 94.68907 * 18 17 7 20 20 C 1.39879 * 107.92136 * 179.90257 * 19 18 17 21 21 N 1.30841 * 108.19593 * 0.36599 * 20 19 18 22 22 N 1.34956 * 126.12710 * 275.00001 * 18 17 7 23 23 C 1.46497 * 126.03332 * 359.94313 * 22 18 17 24 24 H 1.08999 * 109.47067 * 299.99767 * 1 2 3 25 25 H 1.09004 * 109.47218 * 59.99989 * 1 2 3 26 26 H 1.09008 * 109.46864 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.47159 * 240.00272 * 2 1 3 28 28 H 1.08997 * 109.46972 * 120.00842 * 2 1 3 29 29 H 1.09002 * 109.46634 * 58.82843 * 6 4 3 30 30 H 1.08996 * 109.46984 * 298.82460 * 6 4 3 31 31 H 1.08996 * 109.46729 * 47.64583 * 8 7 6 32 32 H 1.08999 * 109.47202 * 167.64567 * 8 7 6 33 33 H 0.96995 * 119.99774 * 179.97438 * 12 11 9 34 34 H 1.09004 * 109.46699 * 50.00224 * 17 7 6 35 35 H 1.08996 * 109.47195 * 290.00134 * 17 7 6 36 36 H 1.08000 * 126.04239 * 0.03771 * 19 18 17 37 37 H 1.07999 * 125.89852 * 180.13947 * 20 19 18 38 38 H 1.08997 * 109.47190 * 90.00065 * 23 22 18 39 39 H 1.09005 * 109.46636 * 209.99761 * 23 22 18 40 40 H 1.08997 * 109.47587 * 329.99456 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3874 2.8607 0.0292 8 6 5.9897 4.1208 -0.4260 9 6 5.8041 4.2571 -1.9153 10 1 5.3393 3.4602 -2.4768 11 6 6.2277 5.3993 -2.5611 12 7 6.7941 6.3696 -1.8774 13 14 5.9983 5.5680 -4.4073 14 1 4.6823 6.1965 -4.6872 15 1 7.0812 6.4173 -4.9651 16 1 6.0490 4.2241 -5.0372 17 6 5.8692 2.5008 1.3695 18 6 7.3429 2.1920 1.3074 19 6 8.3509 3.0582 1.5614 20 6 9.5592 2.3736 1.3941 21 7 9.2863 1.1427 1.0443 22 7 7.8939 1.0036 0.9828 23 6 7.1643 -0.2166 0.6291 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8933 -0.5140 0.8899 29 1 3.5676 3.4769 0.8788 30 1 3.6022 3.4619 -0.9008 31 1 5.5064 4.9575 0.0785 32 1 7.0540 4.1206 -0.1911 33 1 7.0924 7.1729 -2.3318 34 1 5.3289 1.6240 1.7264 35 1 5.7010 3.3339 2.0519 36 1 8.2418 4.0945 1.8454 37 1 10.5467 2.7902 1.5269 38 1 6.9990 -0.2418 -0.4480 39 1 7.7474 -1.0879 0.9277 40 1 6.2040 -0.2282 1.1445 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206365712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:53 Heat of formation + Delta-G solvation = -19.407148 kcal Electronic energy + Delta-G solvation = -22650.263178 eV Core-core repulsion = 19273.639978 eV Total energy + Delta-G solvation = -3376.623199 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.14140 -41.36678 -38.51862 -37.17550 -34.72909 -34.04341 -32.72442 -31.97912 -29.86804 -28.51839 -27.50707 -25.95480 -24.27042 -22.99721 -21.97874 -21.68450 -20.51219 -18.73323 -18.47048 -17.89027 -17.40930 -17.34977 -16.58961 -16.43327 -15.71881 -15.53865 -15.21628 -14.96657 -14.70823 -14.46329 -14.03047 -13.87679 -13.58085 -13.49092 -13.36466 -13.16005 -13.07598 -12.81915 -12.70471 -12.56074 -12.45388 -12.42876 -11.99645 -11.58594 -11.44110 -11.41071 -11.21774 -10.57423 -10.18508 -9.38920 -9.13937 -8.17153 -6.25378 0.92612 1.28423 1.40208 1.42446 1.52216 1.66832 1.73897 1.95657 2.41435 3.16127 3.30133 3.70781 3.79091 3.88923 4.05883 4.09936 4.15828 4.26272 4.37593 4.40236 4.44158 4.52173 4.57511 4.71722 4.82276 4.88041 4.89463 4.96814 5.15540 5.18836 5.26302 5.29773 5.52148 5.65463 5.81671 6.05143 6.09802 6.21578 6.46413 6.82645 6.87815 6.90411 7.42874 8.92624 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.009624 B = 0.007453 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.708177 B = 3755.930323 C = 6013.200988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 O -0.366 6.366 4 C 0.470 3.530 5 O -0.514 6.514 6 C 0.069 3.931 7 N -0.529 5.529 8 C 0.208 3.792 9 C -0.523 4.523 10 H 0.053 0.947 11 C 0.012 3.988 12 N -0.924 5.924 13 Si 0.956 3.044 14 H -0.268 1.268 15 H -0.284 1.284 16 H -0.275 1.275 17 C 0.119 3.881 18 C 0.100 3.900 19 C -0.283 4.283 20 C 0.042 3.958 21 N -0.333 5.333 22 N -0.367 5.367 23 C 0.114 3.886 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.115 0.885 31 H -0.016 1.016 32 H 0.026 0.974 33 H 0.264 0.736 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.146 0.854 37 H 0.209 0.791 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.137 -10.444 7.651 15.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 O -0.283 6.283 4 C 0.313 3.687 5 O -0.402 6.402 6 C -0.060 4.060 7 N -0.255 5.255 8 C 0.083 3.917 9 C -0.562 4.562 10 H 0.071 0.929 11 C -0.187 4.187 12 N -0.564 5.564 13 Si 0.781 3.219 14 H -0.193 1.193 15 H -0.210 1.210 16 H -0.200 1.200 17 C -0.010 4.010 18 C -0.029 4.029 19 C -0.313 4.313 20 C -0.142 4.142 21 N -0.156 5.156 22 N -0.149 5.149 23 C -0.027 4.027 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.133 0.867 31 H 0.002 0.998 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.163 0.837 37 H 0.225 0.775 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.330 -12.256 6.956 16.370 hybrid contribution -0.292 1.675 -0.416 1.750 sum -8.622 -10.581 6.540 15.135 Atomic orbital electron populations 1.21820 0.90538 1.04283 1.03607 1.23254 0.96950 0.79269 1.02444 1.86507 1.23918 1.33813 1.84024 1.23807 0.80529 0.92639 0.71742 1.90551 1.60770 1.43331 1.45578 1.21507 0.88606 0.90218 1.05651 1.61534 1.04424 1.36428 1.23126 1.19518 0.94599 0.83114 0.94489 1.21365 1.39364 1.01691 0.93741 0.92868 1.25692 0.94967 0.95487 1.02535 1.70045 1.41359 1.07576 1.37432 0.85590 0.78113 0.77838 0.80314 1.19311 1.20968 1.20032 1.20674 0.88240 1.01163 0.90933 1.21012 0.96227 0.86763 0.98894 1.21434 0.91773 1.01216 1.16859 1.24198 1.00525 0.90949 0.98560 1.77167 0.91501 1.21125 1.25785 1.48591 1.04004 1.10155 1.52182 1.21824 0.95989 0.83283 1.01572 0.91120 0.91687 0.88111 0.91867 0.90940 0.88932 0.86706 0.99827 0.95578 0.92714 0.89128 0.91674 0.83656 0.77471 0.92050 0.88462 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.29 71.98 0.74 -1.29 16 2 C 0.05 1.12 6.19 71.98 0.45 1.56 16 3 O -0.37 -9.90 10.22 -51.36 -0.52 -10.42 16 4 C 0.47 14.91 7.60 71.24 0.54 15.45 16 5 O -0.51 -17.85 14.28 21.95 0.31 -17.53 16 6 C 0.07 2.37 5.42 85.56 0.46 2.84 16 7 N -0.53 -21.53 4.00 -909.96 -3.64 -25.17 16 8 C 0.21 10.34 4.59 85.56 0.39 10.74 16 9 C -0.52 -28.69 8.33 25.60 0.21 -28.48 16 10 H 0.05 2.94 7.79 -2.91 -0.02 2.92 16 11 C 0.01 0.68 5.46 84.65 0.46 1.14 16 12 N -0.92 -53.61 13.29 21.45 0.28 -53.33 16 13 Si 0.96 43.91 29.54 68.60 2.03 45.93 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 15 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 C 0.12 4.16 4.76 85.56 0.41 4.57 16 18 C 0.10 3.82 5.74 41.40 0.24 4.06 16 19 C -0.28 -10.69 9.28 21.99 0.20 -10.49 16 20 C 0.04 1.48 12.03 85.24 1.03 2.51 16 21 N -0.33 -12.82 12.57 -57.02 -0.72 -13.54 16 22 N -0.37 -13.78 4.01 -356.04 -1.43 -15.20 16 23 C 0.11 3.53 11.27 127.77 1.44 4.97 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 29 H 0.09 2.69 8.00 -2.39 -0.02 2.67 16 30 H 0.12 4.30 7.13 -2.39 -0.02 4.28 16 31 H -0.02 -0.83 8.05 -2.39 -0.02 -0.85 16 32 H 0.03 1.43 5.80 -2.39 -0.01 1.41 16 33 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 34 H 0.09 2.86 5.82 -2.38 -0.01 2.85 16 35 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 36 H 0.15 5.30 8.06 -2.91 -0.02 5.27 16 37 H 0.21 5.64 8.06 -2.91 -0.02 5.61 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 40 H 0.10 2.77 6.41 -2.39 -0.02 2.75 16 Total: -1.00 -67.89 338.71 3.92 -63.97 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 1.03 Total: 17.71 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 6.57 Total: 7.57 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -5.50 Total: -107.23 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.21 Total: -27.95 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -67.89 3.92 -63.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206365712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.565 kcal (2) G-P(sol) polarization free energy of solvation -67.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds