Wall clock time and date at job start Tue Mar 31 2020 05:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47034 * 2 1 4 4 C 1.50701 * 109.47409 * 120.00311 * 2 1 3 5 5 N 1.29952 * 126.28294 * 300.02938 * 4 2 1 6 6 O 1.21298 * 110.24894 * 180.02562 * 5 4 2 7 7 C 1.33644 * 109.81057 * 359.97438 * 6 5 4 8 8 C 1.50699 * 126.55069 * 179.97438 * 7 6 5 9 9 O 1.42894 * 109.47535 * 270.03226 * 8 7 6 10 10 C 1.42902 * 114.00389 * 179.97438 * 9 8 7 11 11 H 1.09002 * 110.88430 * 32.42402 * 10 9 8 12 12 C 1.55153 * 111.03968 * 156.32683 * 10 9 8 13 13 C 1.54340 * 103.01975 * 153.39349 * 12 10 9 14 14 N 1.47021 * 107.26384 * 338.14806 * 13 12 10 15 15 C 1.36941 * 125.64137 * 178.85109 * 14 13 12 16 16 H 1.08008 * 119.99381 * 186.33404 * 15 14 13 17 17 C 1.38812 * 120.00565 * 6.32996 * 15 14 13 18 18 N 1.31618 * 119.99440 * 7.38012 * 17 15 14 19 19 Si 1.86793 * 120.00104 * 187.37813 * 17 15 14 20 20 H 1.48507 * 109.47081 * 84.99136 * 19 17 15 21 21 H 1.48502 * 109.47308 * 324.99111 * 19 17 15 22 22 H 1.48499 * 109.47100 * 204.98882 * 19 17 15 23 23 C 1.47414 * 108.70498 * 358.57942 * 14 13 12 24 24 N 1.31127 * 106.90270 * 0.23196 * 7 6 5 25 25 H 1.08990 * 109.47374 * 299.99373 * 1 2 3 26 26 H 1.09006 * 109.47143 * 60.00103 * 1 2 3 27 27 H 1.09003 * 109.47012 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47324 * 240.00189 * 2 1 3 29 29 H 1.08998 * 109.47062 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47117 * 300.00010 * 3 2 1 31 31 H 1.09003 * 109.46217 * 60.00216 * 3 2 1 32 32 H 1.09002 * 109.47283 * 150.02744 * 8 7 6 33 33 H 1.09006 * 109.46931 * 30.03531 * 8 7 6 34 34 H 1.08998 * 110.72605 * 271.95313 * 12 10 9 35 35 H 1.09006 * 110.72063 * 35.05646 * 12 10 9 36 36 H 1.09000 * 109.99284 * 218.66582 * 13 12 10 37 37 H 1.09007 * 109.77468 * 97.50118 * 13 12 10 38 38 H 0.97004 * 119.99432 * 179.97438 * 18 17 15 39 39 H 1.09003 * 110.36883 * 143.19597 * 23 14 13 40 40 H 1.09009 * 110.37024 * 265.41071 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7945 -0.3750 2.4631 6 8 2.3416 -1.1476 3.2215 7 6 3.0000 -2.0777 2.5234 8 6 3.8082 -3.2181 3.0869 9 8 5.1628 -2.7996 3.2649 10 6 6.0187 -3.8122 3.7981 11 1 5.7067 -4.8012 3.4623 12 6 7.5007 -3.5409 3.4274 13 6 8.2767 -4.2308 4.5693 14 7 7.3580 -4.3509 5.7108 15 6 7.6546 -4.9286 6.9164 16 1 6.8798 -5.0598 7.6574 17 6 8.9508 -5.3456 7.1862 18 7 9.9229 -5.0568 6.3473 19 14 9.3153 -6.3165 8.7398 20 1 9.0541 -7.7578 8.4955 21 1 8.4426 -5.8349 9.8407 22 1 10.7389 -6.1286 9.1184 23 6 6.0669 -3.7407 5.3448 24 7 2.8131 -1.8054 1.2544 25 1 -0.3633 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9562 0.8901 32 1 3.7761 -4.0617 2.3974 33 1 3.3913 -3.5186 4.0482 34 1 7.7459 -3.9901 2.4650 35 1 7.7054 -2.4703 3.4152 36 1 9.1404 -3.6281 4.8502 37 1 8.6014 -5.2209 4.2489 38 1 10.8288 -5.3479 6.5360 39 1 5.2429 -4.3086 5.7767 40 1 6.0288 -2.7040 5.6796 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222986799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:44 Heat of formation + Delta-G solvation = 45.067878 kcal Electronic energy + Delta-G solvation = -21630.882905 eV Core-core repulsion = 18257.055553 eV Total energy + Delta-G solvation = -3373.827352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.71573 -38.62451 -37.09651 -36.23044 -34.74324 -32.53079 -31.89736 -29.34406 -27.93300 -27.58254 -26.84336 -24.78591 -24.34393 -23.23331 -20.51961 -20.43023 -20.05245 -18.26458 -17.76487 -17.02270 -16.69023 -15.68172 -15.36373 -15.03586 -14.66621 -14.42756 -14.14608 -13.78627 -13.45311 -12.97603 -12.62537 -12.48826 -12.29566 -12.14973 -11.98461 -11.92339 -11.72395 -11.46705 -11.43417 -11.14514 -11.03152 -10.96696 -10.79772 -10.35881 -10.14139 -10.12456 -9.83316 -9.75102 -9.32459 -8.64382 -6.86953 -5.73533 -3.10165 0.92414 2.02183 2.57790 3.31198 3.39256 3.44019 3.46057 3.79164 4.03572 4.48543 4.54771 4.66212 4.66884 4.91085 5.06907 5.14610 5.22849 5.32354 5.35735 5.40393 5.42009 5.48090 5.49575 5.63880 5.66182 5.74495 5.78029 5.81618 5.93875 6.15292 6.36676 6.46869 6.59189 6.62105 7.32147 7.43945 7.62323 7.78136 8.01948 8.22595 9.17078 9.77938 10.42946 11.36718 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.049045 B = 0.002815 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.769090 B = 9945.926172 C =10207.474489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.003 4.003 3 C -0.146 4.146 4 C 0.172 3.828 5 N -0.378 5.378 6 O 0.087 5.913 7 C 0.193 3.807 8 C 0.155 3.845 9 O -0.371 6.371 10 C 0.073 3.927 11 H 0.075 0.925 12 C -0.135 4.135 13 C 0.173 3.827 14 N -0.602 5.602 15 C -0.231 4.231 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.920 5.920 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.281 1.281 22 H -0.291 1.291 23 C 0.115 3.885 24 N -0.467 5.467 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.034 0.966 38 H 0.253 0.747 39 H 0.040 0.960 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.390 7.243 -12.779 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 C -0.204 4.204 4 C -0.102 4.102 5 N -0.085 5.085 6 O 0.027 5.973 7 C -0.028 4.028 8 C 0.076 3.924 9 O -0.289 6.289 10 C 0.015 3.985 11 H 0.093 0.907 12 C -0.173 4.173 13 C 0.049 3.951 14 N -0.330 5.330 15 C -0.359 4.359 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.567 5.567 19 Si 0.744 3.256 20 H -0.215 1.215 21 H -0.207 1.207 22 H -0.217 1.217 23 C -0.011 4.011 24 N -0.202 5.202 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.120 0.880 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -16.554 7.972 -12.916 22.459 hybrid contribution 0.321 -0.853 0.993 1.348 sum -16.233 7.119 -11.923 21.362 Atomic orbital electron populations 1.21849 0.92884 1.02563 1.02975 1.19564 0.96357 0.95461 0.90975 1.21858 1.01713 0.93892 1.02938 1.25854 0.96684 0.92963 0.94652 1.74583 1.17737 1.13289 1.02868 1.85323 1.47478 1.29291 1.35194 1.28423 0.94931 0.93705 0.85739 1.20607 0.82886 0.87982 1.00930 1.87953 1.16456 1.39543 1.84955 1.23571 0.90320 0.89539 0.95040 0.90738 1.22982 0.92341 1.01836 1.00156 1.21245 0.92221 0.98154 0.83517 1.44347 1.08192 1.67944 1.12484 1.19042 0.93867 1.31715 0.91282 0.90351 1.24834 0.95436 1.01432 0.98705 1.69943 0.99941 1.49807 1.37005 0.86116 0.77248 0.79912 0.82351 1.21516 1.20669 1.21673 1.21954 0.90418 0.97059 0.91701 1.71914 1.16001 1.14174 1.18097 0.91835 0.91046 0.92282 0.87990 0.92112 0.91032 0.91836 0.88499 0.89158 0.91582 0.91266 0.91754 0.94753 0.93635 0.94130 0.95249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.18 37.16 0.34 -0.73 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.15 -1.18 9.18 37.16 0.34 -0.84 16 4 C 0.17 2.18 6.72 -156.36 -1.05 1.13 16 5 N -0.38 -5.23 12.16 30.90 0.38 -4.85 16 6 O 0.09 1.21 11.31 18.10 0.20 1.41 16 7 C 0.19 2.57 8.14 -13.06 -0.11 2.47 16 8 C 0.15 1.85 6.44 36.01 0.23 2.08 16 9 O -0.37 -5.85 10.14 -35.23 -0.36 -6.20 16 10 C 0.07 1.25 3.49 -24.59 -0.09 1.17 16 11 H 0.07 1.16 7.90 -51.93 -0.41 0.75 16 12 C -0.13 -2.53 6.69 -24.89 -0.17 -2.70 16 13 C 0.17 4.14 5.43 -3.06 -0.02 4.13 16 14 N -0.60 -15.22 3.39 -170.06 -0.58 -15.80 16 15 C -0.23 -6.37 10.26 -15.06 -0.15 -6.52 16 16 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 17 C -0.01 -0.21 5.45 -17.43 -0.09 -0.30 16 18 N -0.92 -26.81 10.48 55.49 0.58 -26.23 16 19 Si 0.91 21.85 29.56 -169.99 -5.02 16.83 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C 0.12 2.35 6.97 -2.54 -0.02 2.33 16 24 N -0.47 -6.50 11.55 -9.87 -0.11 -6.61 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.97 8.11 -51.93 -0.42 0.55 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.73 6.99 -51.93 -0.36 1.36 16 37 H 0.03 0.88 7.92 -51.93 -0.41 0.47 16 38 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 LS Contribution 336.01 15.07 5.06 5.06 Total: -1.00 -31.64 336.01 -7.16 -38.80 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -6.23 Total: -4.29 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.09 Total: 1.87 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.27 Total: -53.48 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.15 Total: -4.79 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.64 -7.16 -38.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222986799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.872 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds