Wall clock time and date at job start Tue Mar 31 2020 05:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47034 * 2 1 4 4 C 1.50701 * 109.47409 * 120.00311 * 2 1 3 5 5 N 1.29952 * 126.28294 * 300.02938 * 4 2 1 6 6 O 1.21298 * 110.24894 * 180.02562 * 5 4 2 7 7 C 1.33644 * 109.81057 * 359.97438 * 6 5 4 8 8 C 1.50699 * 126.55069 * 179.97438 * 7 6 5 9 9 O 1.42894 * 109.47535 * 270.03226 * 8 7 6 10 10 C 1.42902 * 114.00389 * 179.97438 * 9 8 7 11 11 H 1.09002 * 110.88430 * 32.42402 * 10 9 8 12 12 C 1.55153 * 111.03968 * 156.32683 * 10 9 8 13 13 C 1.54340 * 103.01975 * 153.39349 * 12 10 9 14 14 N 1.47021 * 107.26384 * 338.14806 * 13 12 10 15 15 C 1.36941 * 125.64137 * 178.85109 * 14 13 12 16 16 H 1.08008 * 119.99381 * 186.33404 * 15 14 13 17 17 C 1.38812 * 120.00565 * 6.32996 * 15 14 13 18 18 N 1.31618 * 119.99440 * 7.38012 * 17 15 14 19 19 Si 1.86793 * 120.00104 * 187.37813 * 17 15 14 20 20 H 1.48507 * 109.47081 * 84.99136 * 19 17 15 21 21 H 1.48502 * 109.47308 * 324.99111 * 19 17 15 22 22 H 1.48499 * 109.47100 * 204.98882 * 19 17 15 23 23 C 1.47414 * 108.70498 * 358.57942 * 14 13 12 24 24 N 1.31127 * 106.90270 * 0.23196 * 7 6 5 25 25 H 1.08990 * 109.47374 * 299.99373 * 1 2 3 26 26 H 1.09006 * 109.47143 * 60.00103 * 1 2 3 27 27 H 1.09003 * 109.47012 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47324 * 240.00189 * 2 1 3 29 29 H 1.08998 * 109.47062 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47117 * 300.00010 * 3 2 1 31 31 H 1.09003 * 109.46217 * 60.00216 * 3 2 1 32 32 H 1.09002 * 109.47283 * 150.02744 * 8 7 6 33 33 H 1.09006 * 109.46931 * 30.03531 * 8 7 6 34 34 H 1.08998 * 110.72605 * 271.95313 * 12 10 9 35 35 H 1.09006 * 110.72063 * 35.05646 * 12 10 9 36 36 H 1.09000 * 109.99284 * 218.66582 * 13 12 10 37 37 H 1.09007 * 109.77468 * 97.50118 * 13 12 10 38 38 H 0.97004 * 119.99432 * 179.97438 * 18 17 15 39 39 H 1.09003 * 110.36883 * 143.19597 * 23 14 13 40 40 H 1.09009 * 110.37024 * 265.41071 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7945 -0.3750 2.4631 6 8 2.3416 -1.1476 3.2215 7 6 3.0000 -2.0777 2.5234 8 6 3.8082 -3.2181 3.0869 9 8 5.1628 -2.7996 3.2649 10 6 6.0187 -3.8122 3.7981 11 1 5.7067 -4.8012 3.4623 12 6 7.5007 -3.5409 3.4274 13 6 8.2767 -4.2308 4.5693 14 7 7.3580 -4.3509 5.7108 15 6 7.6546 -4.9286 6.9164 16 1 6.8798 -5.0598 7.6574 17 6 8.9508 -5.3456 7.1862 18 7 9.9229 -5.0568 6.3473 19 14 9.3153 -6.3165 8.7398 20 1 9.0541 -7.7578 8.4955 21 1 8.4426 -5.8349 9.8407 22 1 10.7389 -6.1286 9.1184 23 6 6.0669 -3.7407 5.3448 24 7 2.8131 -1.8054 1.2544 25 1 -0.3633 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9562 0.8901 32 1 3.7761 -4.0617 2.3974 33 1 3.3913 -3.5186 4.0482 34 1 7.7459 -3.9901 2.4650 35 1 7.7054 -2.4703 3.4152 36 1 9.1404 -3.6281 4.8502 37 1 8.6014 -5.2209 4.2489 38 1 10.8288 -5.3479 6.5360 39 1 5.2429 -4.3086 5.7767 40 1 6.0288 -2.7040 5.6796 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222986799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:43 Heat of formation + Delta-G solvation = 23.401169 kcal Electronic energy + Delta-G solvation = -21631.822444 eV Core-core repulsion = 18257.055553 eV Total energy + Delta-G solvation = -3374.766891 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -46.71902 -40.01366 -37.95119 -37.76920 -35.69769 -34.24839 -33.09556 -31.13308 -29.28360 -28.28777 -28.17859 -26.24673 -25.68351 -24.18185 -22.09204 -21.91750 -21.17986 -19.31723 -18.98982 -18.67975 -17.95586 -16.88289 -16.64049 -16.23180 -16.03281 -15.77210 -15.27122 -15.02996 -14.45827 -14.40158 -13.99526 -13.83839 -13.54685 -13.26902 -13.22386 -12.89533 -12.79416 -12.73922 -12.62529 -12.39500 -12.34667 -12.17859 -12.08757 -12.02498 -11.90173 -11.74785 -11.45354 -11.07365 -10.72996 -10.62879 -8.90293 -7.83594 -5.22535 -0.09705 1.03945 1.48565 1.50752 1.58259 1.59572 2.38516 2.50746 2.81334 2.99779 3.33979 3.69745 3.76914 3.80121 3.94874 4.02234 4.06450 4.12318 4.19583 4.28078 4.36266 4.61075 4.64858 4.68026 4.70755 4.75790 4.82583 4.88948 4.96413 5.01550 5.03611 5.06953 5.21066 5.26429 5.44872 5.63313 5.74669 6.05957 6.22249 7.01992 7.09004 7.76126 8.40109 9.25302 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.049045 B = 0.002815 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.769090 B = 9945.926172 C =10207.474489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.008 4.008 3 C -0.142 4.142 4 C 0.171 3.829 5 N -0.395 5.395 6 O 0.074 5.926 7 C 0.192 3.808 8 C 0.150 3.850 9 O -0.384 6.384 10 C 0.096 3.904 11 H 0.101 0.899 12 C -0.125 4.125 13 C 0.180 3.820 14 N -0.624 5.624 15 C -0.243 4.243 16 H 0.086 0.914 17 C -0.067 4.067 18 N -0.951 5.951 19 Si 0.980 3.020 20 H -0.283 1.283 21 H -0.269 1.269 22 H -0.297 1.297 23 C 0.109 3.891 24 N -0.483 5.483 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.112 0.888 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.024 0.976 37 H 0.009 0.991 38 H 0.248 0.752 39 H 0.059 0.941 40 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.294 6.983 -13.726 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 C -0.200 4.200 4 C -0.102 4.102 5 N -0.104 5.104 6 O 0.017 5.983 7 C -0.029 4.029 8 C 0.072 3.928 9 O -0.302 6.302 10 C 0.038 3.962 11 H 0.118 0.882 12 C -0.163 4.163 13 C 0.055 3.945 14 N -0.352 5.352 15 C -0.372 4.372 16 H 0.103 0.897 17 C -0.260 4.260 18 N -0.600 5.600 19 Si 0.808 3.192 20 H -0.209 1.209 21 H -0.194 1.194 22 H -0.223 1.223 23 C -0.016 4.016 24 N -0.219 5.219 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.130 0.870 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.141 0.859 33 H 0.132 0.868 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.027 0.973 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -18.498 7.719 -13.855 24.367 hybrid contribution 0.843 -0.703 1.254 1.667 sum -17.655 7.016 -12.601 22.797 Atomic orbital electron populations 1.21827 0.91469 1.02609 1.03784 1.19840 0.97486 0.95672 0.89769 1.21847 1.00908 0.93422 1.03815 1.26551 0.95745 0.92532 0.95398 1.74580 1.18640 1.13804 1.03399 1.85300 1.47867 1.29587 1.35524 1.28715 0.94748 0.93706 0.85743 1.20970 0.80821 0.88001 1.02964 1.87909 1.18218 1.39475 1.84639 1.23209 0.89633 0.90958 0.92390 0.88153 1.22802 0.93160 1.01197 0.99139 1.20982 0.91951 0.96529 0.85045 1.44657 1.10277 1.67995 1.12227 1.19466 0.94153 1.31204 0.92397 0.89658 1.25700 0.95448 1.02886 1.01943 1.70169 0.99924 1.51067 1.38807 0.85071 0.76583 0.78493 0.79032 1.20935 1.19383 1.22339 1.22144 0.88785 0.96193 0.94500 1.71936 1.16613 1.14865 1.18468 0.92820 0.88416 0.92614 0.86964 0.93312 0.88248 0.92859 0.85854 0.86803 0.88915 0.91537 0.95785 0.97255 0.94314 0.92236 0.96322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.18 71.98 0.66 -1.12 16 2 C -0.01 -0.13 3.39 -11.54 -0.04 -0.17 16 3 C -0.14 -2.07 9.18 71.98 0.66 -1.41 16 4 C 0.17 4.15 6.72 138.46 0.93 5.08 16 5 N -0.40 -10.66 12.16 -60.32 -0.73 -11.39 16 6 O 0.07 2.00 11.31 74.82 0.85 2.85 16 7 C 0.19 4.79 8.14 88.38 0.72 5.51 16 8 C 0.15 3.15 6.44 71.24 0.46 3.61 16 9 O -0.38 -11.13 10.14 -148.98 -1.51 -12.64 16 10 C 0.10 3.06 3.49 31.98 0.11 3.17 16 11 H 0.10 2.73 7.90 -2.39 -0.02 2.71 16 12 C -0.12 -4.54 6.69 31.79 0.21 -4.33 16 13 C 0.18 8.77 5.43 86.73 0.47 9.25 16 14 N -0.62 -31.63 3.39 -691.95 -2.35 -33.98 16 15 C -0.24 -13.46 10.26 84.03 0.86 -12.59 16 16 H 0.09 4.46 7.84 -2.91 -0.02 4.44 16 17 C -0.07 -3.77 5.45 84.86 0.46 -3.30 16 18 N -0.95 -57.05 10.48 21.65 0.23 -56.83 16 19 Si 0.98 45.25 29.56 68.60 2.03 47.27 16 20 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 23 C 0.11 4.30 6.97 86.86 0.61 4.91 16 24 N -0.48 -12.71 11.55 -303.20 -3.50 -16.21 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.12 1.98 8.11 -2.39 -0.02 1.96 16 33 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.02 1.35 6.99 -2.39 -0.02 1.33 16 37 H 0.01 0.49 7.92 -2.38 -0.02 0.47 16 38 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -69.73 336.01 2.14 -67.59 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 1.02 Total: 4.73 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 6.12 Total: 8.61 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -6.36 Total: -118.40 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.66 Total: -9.79 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -69.73 2.14 -67.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222986799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.987 kcal (2) G-P(sol) polarization free energy of solvation -69.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds