Wall clock time and date at job start Tue Mar 31 2020 05:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47145 * 2 1 4 4 C 1.53003 * 109.47212 * 240.00332 * 2 1 3 5 5 C 1.50703 * 109.47289 * 59.99641 * 4 2 1 6 6 O 1.20826 * 119.99506 * 0.02562 * 5 4 2 7 7 O 1.34224 * 120.00357 * 180.02562 * 5 4 2 8 8 N 1.46499 * 109.47318 * 120.00333 * 2 1 3 9 9 C 1.35316 * 125.86879 * 285.29525 * 8 2 1 10 10 C 1.35346 * 106.17696 * 180.18776 * 9 8 2 11 11 C 1.50696 * 126.75136 * 179.85675 * 10 9 8 12 12 C 1.52997 * 109.47242 * 124.70936 * 11 10 9 13 13 C 1.53006 * 109.47127 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47184 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99819 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00046 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99809 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99912 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47123 * 90.00333 * 18 16 14 20 20 H 1.48506 * 109.46940 * 210.00455 * 18 16 14 21 21 H 1.48493 * 109.47121 * 329.99876 * 18 16 14 22 22 N 1.33775 * 106.49630 * 359.58825 * 10 9 8 23 23 N 1.28632 * 108.88391 * 0.26614 * 22 10 9 24 24 H 1.08993 * 109.47093 * 299.99584 * 1 2 3 25 25 H 1.09001 * 109.47370 * 60.00000 * 1 2 3 26 26 H 1.09002 * 109.47321 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47679 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47425 * 300.00360 * 3 2 1 29 29 H 1.09005 * 109.47153 * 60.00408 * 3 2 1 30 30 H 1.08994 * 109.47080 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47121 * 300.00298 * 4 2 1 32 32 H 0.96696 * 117.00288 * 180.02562 * 7 5 4 33 33 H 1.08001 * 126.90819 * 0.03578 * 9 8 2 34 34 H 1.08996 * 109.47390 * 4.70906 * 11 10 9 35 35 H 1.09001 * 109.46948 * 244.70548 * 11 10 9 36 36 H 1.09001 * 109.47502 * 60.00161 * 12 11 10 37 37 H 1.09001 * 109.47289 * 299.99957 * 12 11 10 38 38 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 39 39 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 40 40 H 0.97004 * 119.99097 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 8 0.8433 0.9718 -2.3688 7 8 1.8614 -0.4696 -3.6989 8 7 2.0183 -0.6907 1.1961 9 6 2.0099 -0.1967 2.4559 10 6 2.5520 -1.1567 3.2409 11 6 2.7678 -1.0877 4.7308 12 6 2.0865 -2.2826 5.4007 13 6 2.3051 -2.2122 6.9134 14 6 1.6346 -3.3895 7.5732 15 1 1.1051 -4.1152 6.9736 16 6 1.6962 -3.5397 8.9424 17 7 1.1105 -4.5670 9.5182 18 14 2.6114 -2.2842 9.9794 19 1 1.6771 -1.2051 10.3891 20 1 3.1619 -2.9478 11.1885 21 1 3.7227 -1.7018 9.1852 22 7 2.8531 -2.1812 2.4351 23 7 2.5247 -1.8735 1.2301 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1299 -0.7216 -1.2490 31 1 1.6766 -1.7489 -1.2494 32 1 1.5160 0.0196 -4.4581 33 1 1.6463 0.7702 2.7710 34 1 2.3408 -0.1624 5.1173 35 1 3.8364 -1.1119 4.9446 36 1 2.5136 -3.2081 5.0142 37 1 1.0180 -2.2585 5.1869 38 1 3.3736 -2.2362 7.1276 39 1 1.8777 -1.2869 7.2995 40 1 1.1542 -4.6727 10.4815 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254093613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:52 Heat of formation + Delta-G solvation = -5.830677 kcal Electronic energy + Delta-G solvation = -21616.485268 eV Core-core repulsion = 18240.450789 eV Total energy + Delta-G solvation = -3376.034479 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.29144 -41.11358 -37.83864 -36.41386 -34.91657 -32.61022 -31.83648 -30.81609 -29.33072 -28.01092 -27.41056 -24.08815 -23.62341 -22.37649 -21.14971 -20.20795 -19.40792 -18.83056 -17.39655 -16.70182 -16.65513 -16.43782 -16.17401 -14.86918 -14.73234 -14.39012 -14.29083 -14.06080 -13.79109 -13.35790 -13.03558 -12.90038 -12.56128 -12.44371 -12.16582 -12.00557 -11.84422 -11.71794 -11.67152 -11.39642 -11.00064 -10.94864 -10.79990 -10.51423 -10.02815 -9.81941 -9.63109 -9.57592 -9.11300 -8.84124 -8.45856 -5.96110 -3.93282 1.54619 1.65198 1.89979 2.67204 2.74314 3.35951 3.43204 3.47514 3.65068 4.05862 4.18410 4.48680 4.52269 4.66969 4.82998 4.93382 5.01098 5.09734 5.13417 5.24857 5.27144 5.29246 5.37929 5.51334 5.65689 5.70872 5.91086 6.00920 6.04511 6.13770 6.46161 6.61216 6.70632 6.79749 7.02930 7.27366 7.44427 7.55035 7.88658 8.64075 8.65513 9.10402 9.66571 11.17682 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.046095 B = 0.002752 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.289054 B =10173.820114 C =10314.151481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.187 3.813 3 C -0.173 4.173 4 C -0.115 4.115 5 C 0.491 3.509 6 O -0.508 6.508 7 O -0.510 6.510 8 N -0.291 5.291 9 C -0.053 4.053 10 C 0.001 3.999 11 C -0.040 4.040 12 C -0.095 4.095 13 C -0.015 4.015 14 C -0.517 4.517 15 H 0.071 0.929 16 C 0.063 3.937 17 N -0.906 5.906 18 Si 0.881 3.119 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.264 1.264 22 N -0.257 5.257 23 N -0.097 5.097 24 H 0.072 0.928 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.415 0.585 33 H 0.185 0.815 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.017 0.983 39 H 0.010 0.990 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 15.107 -26.497 30.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.104 3.896 3 C -0.231 4.231 4 C -0.153 4.153 5 C 0.334 3.666 6 O -0.398 6.398 7 O -0.322 6.322 8 N -0.086 5.086 9 C -0.202 4.202 10 C -0.137 4.137 11 C -0.079 4.079 12 C -0.133 4.133 13 C -0.052 4.052 14 C -0.555 4.555 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.546 5.546 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.189 1.189 22 N -0.124 5.124 23 N -0.075 5.075 24 H 0.091 0.909 25 H 0.123 0.877 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.125 0.875 29 H 0.092 0.908 30 H 0.138 0.862 31 H 0.145 0.855 32 H 0.274 0.726 33 H 0.202 0.798 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.029 0.971 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.547 13.826 -26.812 30.207 hybrid contribution -0.204 1.848 0.752 2.006 sum 1.343 15.675 -26.060 30.440 Atomic orbital electron populations 1.22533 0.91077 1.03974 1.05560 1.20628 0.96067 0.92297 0.80592 1.22521 1.01991 0.92728 1.05816 1.21397 1.04652 1.01766 0.87509 1.22913 0.76790 0.82102 0.84809 1.90640 1.35992 1.26237 1.86885 1.84528 1.72068 1.58885 1.16683 1.47443 1.41126 1.12343 1.07726 1.23234 1.09792 1.03288 0.83902 1.22319 1.02087 0.90708 0.98587 1.20151 1.02013 1.01089 0.84624 1.21401 0.99161 0.95829 0.96896 1.19597 0.96796 0.97103 0.91693 1.21182 1.33464 1.08537 0.92305 0.91085 1.25056 0.95225 0.95418 0.98016 1.69933 1.44681 1.29603 1.10357 0.86758 0.80800 0.81764 0.79843 1.20414 1.21511 1.18908 1.75091 1.18019 1.23920 0.95351 1.78204 1.14524 0.97486 1.17282 0.90927 0.87666 0.91526 0.91609 0.87484 0.90786 0.86205 0.85528 0.72560 0.79755 0.90709 0.90483 0.91900 0.93060 0.96520 0.97137 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 8.42 37.16 0.31 -1.08 16 2 C 0.19 1.57 0.97 -131.82 -0.13 1.44 16 3 C -0.17 -1.20 8.00 37.15 0.30 -0.90 16 4 C -0.12 -0.82 4.45 -27.88 -0.12 -0.94 16 5 C 0.49 3.08 7.74 36.01 0.28 3.36 16 6 O -0.51 -3.97 12.11 -18.75 -0.23 -4.20 16 7 O -0.51 -2.31 13.42 -39.24 -0.53 -2.84 16 8 N -0.29 -3.46 3.18 -48.55 -0.15 -3.62 16 9 C -0.05 -0.65 10.62 -17.05 -0.18 -0.83 16 10 C 0.00 0.01 6.50 -82.78 -0.54 -0.53 16 11 C -0.04 -0.65 5.79 -27.89 -0.16 -0.81 16 12 C -0.09 -1.98 5.13 -26.73 -0.14 -2.11 16 13 C -0.01 -0.35 4.04 -27.88 -0.11 -0.47 16 14 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 15 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 16 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.91 -28.70 13.96 55.43 0.77 -27.93 16 18 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 22 N -0.26 -4.56 12.40 33.29 0.41 -4.15 16 23 N -0.10 -1.46 12.18 60.35 0.74 -0.72 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.10 0.80 5.52 -51.93 -0.29 0.52 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.11 0.73 5.52 -51.93 -0.29 0.45 16 29 H 0.07 0.46 7.40 -51.93 -0.38 0.08 16 30 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.13 0.93 8.03 -51.93 -0.42 0.51 16 32 H 0.41 0.11 9.10 45.56 0.41 0.52 16 33 H 0.19 1.63 7.60 -52.49 -0.40 1.23 16 34 H 0.07 1.06 8.12 -51.93 -0.42 0.64 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 39 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 40 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 331.64 15.07 5.00 5.00 Total: -1.00 -35.93 331.64 -4.67 -40.60 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -5.09 Total: -2.92 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -0.92 Total: -16.65 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 1.77 Total: -36.42 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.75 Total: -7.04 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.93 -4.67 -40.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254093613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.774 kcal (2) G-P(sol) polarization free energy of solvation -35.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds